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Apoptosis systems biology applied to cancer and AIDS. An integrated approach of experimental biology, data mining, mathematical modelling, biostatistics, systems engineering and molecular medicine (APO-SYS)

Funded under 7th FWP (Seventh Framework Programme)

Research area: HEALTH-2007-2.1.2-4 Developing an integrated in vitro, in vivo and systems biology modelling approach to understanding apoptosis in the context of health and disease

Coordinator
Contact Person: Name: LARSSON, Per-olof (Mr)
Tel: +46-852487500
Fax: +46-8336981
Email: Contact
Organisation: KAROLINSKA INSTITUTET
Nobels Vag 5
SWEDEN

Project description

A Europe-wide consortium of experimental biologists, biomathematicians, biostatisticians, computer scientists and clinical scientists will team up to approach cell death pathways in health and disease, placing particular emphasis on cancer and AIDS.

The consortium will create a unique database integrating existing and accumulating knowledge on lethal signal transduction pathways leading to apoptosis or non-apoptotic (necrotic, autophagic, mitotic) cell death, perform data mining to integrate system-wide analyses on cell death (genome, epigenome, transcriptome, proteome, lipidome data), and use high-throughput methods (omics, CHiP-chip and genome-wide siRNA screens) for the experimental exploration of death pathways in human cell lines in vitro and in relevant disease models (in vitro in human cells and in vivo in mice and Drosophila).

In addition, the consortium will establish mathematical models of lethal pathways to devise algorithms that predict apoptosis susceptibility and resistance, obtain data (genome, transcriptome, proteome, lipidome) on clinical samples (cancer cell lines, cancer tissues, serum, and blood samples) and perform biostatistical analyses on them in order to demonstrate the contribution of apoptotic process in human cancers and AIDS.


Project details
Project Acronym: APO-SYS
Project Reference: 200767
Start Date: 2008-02-01
Duration: 48 months
Project Cost: 14.78 million euro
Contract Type: Large-scale integrating project
End Date: 2012-01-31
Project Status: Execution
Project Funding: 11 million euro

Participants
EUROPAISCHES LABORATORIUM FUER MOLEKULARBIOLOGIE - EMBL GERMANY
SECONDA UNIVERSITA DEGLI STUDI DI NAPOLI ITALY
ROYAL COLLEGE OF SURGEONS IN IRELAND IRELAND
CENTRE EUROPEEN DE RECHERCHE EN BIOLOGIE ET MEDECINE GIE FRANCE
WEIZMANN INSTITUTE OF SCIENCE ISRAEL
INSTITUT NATIONAL DE LA SANTE ET DE LA RECHERCHE MEDICALE (INSERM) FRANCE
ISTITUTO NAZIONALE MALATTIE INFETTIVE L.SPALLANZANI - IRCCS ITALY
MEDICEL OY FINLAND
INSTITUT FUER MOLEKULARE BIOTECHNOLOGIE GMBH AUSTRIA
VLAAMS INTERUNIVERSITAIR INSTITUUT VOOR BIOTECHNOLOGIE VZW BELGIUM
UNIVERSITE CLAUDE BERNARD LYON 1 FRANCE
UNIVERSITE DE LA MEDITERRANEE D'AIX-MARSEILLE II FRANCE
KRAEFTENS BEKAEMPELSE DENMARK
SYDDANSK UNIVERSITET. DENMARK
UNIVERSITE DE LAUSANNE SWITZERLAND
UNIVERSITAET ULM GERMANY
Valtion Teknillinen Tutkimuskeskus (VTT) FINLAND
KARL-FRANZENS-UNIVERSITAET GRAZ AUSTRIA
DEUTSCHES KREBSFORSCHUNGSZENTRUM HEIDELBERG GERMANY
INSTITUT CURIE FRANCE
MAX PLANCK GESELLSCHAFT ZUR FOERDERUNG DER WISSENSCHAFTEN E.V. GERMANY
TEL AVIV UNIVERSITY ISRAEL
Record Control Number: 88080
Update Date: 2008-12-02 09:20:05.0

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