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Content archived on 2024-06-18

Using evolution to uncover the importance of alternative pre mRNA splicing

Objective

A major mystery of the genome age is why complex and simple organisms all have a similar number of genes. My specialism is in ‘Alternative Splicing’ which is the means by which different products can be made from a single gene by differential incorporation of regions of pre-mRNA. Alternative splicing is therefore a mechanism to increase gene complexity in complex organisms like man and in complex tissues like the brain. Alternative splicing has since been shown to be a pervasive mechanism crucial to normal health and development. For two decades labs studied alternative splicing on a gene-by-gene basis. In the last ten years genomewide data has increased the number of known alternative events, and recent developments have found that at least 80% of genes produce alternative mRNAs. The major questions in the field currently concern which of these alternative splices are important, and the problem remains of how to answer this using a huge amount of data. The key innovation of this application is to use an evolutionary approach to identify the important alternative splices using a unique high throughput RT-PCR approach. The proposed project will involve collaboration with biological experts in Newcastle studying brain, muscle and stem cells, with an expert on evolution in France (Dr. Philippe Fort) and with the genomics platform (for which I worked for three years) in Quebec, Canada.

Fields of science (EuroSciVoc)

CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.

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Topic(s)

Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.

Call for proposal

Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.

FP7-PEOPLE-2013-CIG
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Funding Scheme

Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.

MC-CIG - Support for training and career development of researcher (CIG)

Coordinator

UNIVERSITY OF NEWCASTLE UPON TYNE
EU contribution
€ 100 000,00
Address
KINGS GATE
NE1 7RU Newcastle Upon Tyne
United Kingdom

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Region
North East (England) Northumberland and Tyne and Wear Tyneside
Activity type
Higher or Secondary Education Establishments
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Total cost

The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.

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