Objective
The overall ambition is to make intracellular measurements that bridge the gap between quantitative physical models and biological observations, in order to identify and resolve inconsistencies in our current understanding of life at the molecular level.
We are particularly interested in answering fundamental questions about how the molecules that regulate gene expression and DNA replication operate in the intracellular environment. These questions include how transcription factors and RNA polymerases have evolved to rapidly find and bind their specific binding sites on chromosomal DNA, how the initiation of DNA replication is coordinated with cell growth, how cells can filter out leakage during replication of repressed genes, and other questions related to how the physical limitations of molecular interactions constrain cellular regulation.
Answering these questions requires better methods to study intracellular kinetics at high spatial and temporal resolution. For this purpose we will develop single-molecule methods to probe kinetics without perturbing the system. The project depends on development in five different fields (1) new labeling methods using unnatural amino acids, (2) new hardware solutions for single molecule tracking, (3) new microfluidic designs for controlled growth conditions and image analysis, (4) new computational tools to extract the maximal amount of information from many short single molecule trajectories and (5) accurate ways of computing synthetic microscopy images.
In addressing the specific questions stated above the experiments are necessarily combined with biophysical modeling that makes it possible to tell if the experimental results are expected from the previously known interactions and physical limitations due to for example stochasticity, slow diffusion and confined geometries. Overall the project is unique in its ambition to make a physically consistent quantitative description of central processes of life at the molecular level.
Fields of science (EuroSciVoc)
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: The European Science Vocabulary.
- natural sciences biological sciences genetics DNA
- natural sciences physical sciences optics microscopy
- natural sciences mathematics pure mathematics geometry
- natural sciences biological sciences genetics RNA
- natural sciences chemical sciences organic chemistry amines
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Programme(s)
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Topic(s)
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Call for proposal
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
ERC-2013-CoG
See other projects for this call
Funding Scheme
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Host institution
751 05 Uppsala
Sweden
The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.