Objective
Splicing is a crucial aspect of gene regulation and this step in the processing of pre-mRNA to mature mRNA must occur with extreme precision to ensure that the correct message is translated by the ribosome. The coding potential and functional versatility of genes is dramatically increased by alternative splicing pathways that generate different protein isoforms, very often in a developmental stage- or tissue-specific manner. About 95% of multiexon human genes undergo alternative splicing but the functional significance of the vast majority of splice variants is entirely unknown. Moreover, little is known about the evolution of the mechanisms of alternative splicing in vertebrate species.
The main goals of this proposal are therefore to: (a) generate the first large-scale RNA-Seq analysis of splice variants across major vertebrate species; (b) develop a “splicing code” for vertebrates that predicts tissue-specific splicing patterns; (b) identify and characterize the regulation and function of both conserved and tissue/species-specific splice variants; (d) determine the minimal number of code elements sufficient to promote constitutive and different types of regulated alternative splicing.
We will develop an RNA-Seq computational pipeline for the large-scale profiling of alternative splicing in a set of physiologically-equivalent tissues across representative species of vertebrates. From the resulting data we will derive probabilistic models that will allow us, not only to identify biologically informative conserved and condition-specific splicing patterns, but also to make predictions on how individual transcripts are spliced in specific tissues. Such predictions will then be tested in the lab and the experimental results will be used to refine and improve the models. These models will be used to de novo design synthetic splicing reporters with minimal sets of code elements predicted to confer different classes of tissue-dependent alternative splicing.
Fields of science (EuroSciVoc)
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: https://op.europa.eu/en/web/eu-vocabularies/euroscivoc.
CORDIS classifies projects with EuroSciVoc, a multilingual taxonomy of fields of science, through a semi-automatic process based on NLP techniques. See: https://op.europa.eu/en/web/eu-vocabularies/euroscivoc.
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Programme(s)
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Multi-annual funding programmes that define the EU’s priorities for research and innovation.
Topic(s)
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.
Call for proposal
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.
FP7-PEOPLE-2010-IOF
See other projects for this call
Funding Scheme
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.
Coordinator
1649 028 Lisboa
Portugal
The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.