Wspólnotowy Serwis Informacyjny Badan i Rozwoju - CORDIS

List and informativeness of markers used in the Lacaune and Manech populations

A genome scan on the 20 ovine autosomes was performed based on a panel of 163 microsatellite markers. The microsatellite markers were informative, since on average 77 % of the animals were heterozygous, with few differences between families (74 % for family 2 to 82 % for family 6). The average information content ranged from 34 % (chromosome 25) to 86 % (chromosomes 8 or 19).

The markers genotyped per chromosome were:
Chromosome 1 (13 markers): BMS2833 / BMS0835 / BL41 / BM6438 / BMS574 / DIK5019 / CSSM004 / BMS2572 / INRA49 / MAF109 / LSCV105 / BMS1789 / BMS2263 Chromosome 2 (14 markers) : CSSM47 / BMS1591 / BMS1864 / OARCP79 / DIK4469 / DIK1172 / TGLA377 / ILSTS030 / OARFCB20 / ILSTS082 / LSCV037 / LSCV22 / IDVGA72 / OARFCB11 Chromosome 3 (5 markers) : ILSTS045 / RM0096 / BMS2569 / AGLA293 / BMS0772 Chromosome 4 (3 markers): MAF50 / OARHH35 / OARHH64 Chromosome 5 (7 markers): RM006 / DIK2689 / DIK4386 / BMS2258 / OARAE129 / MCM527 / BMS1247 Chromosome 6 (15 markers): OARCP125 / BM9058 / INRA133 / MCM53 / LSCV043 / OARAE101 / DIK4053 / BM143 / OARJMP36 / DIK4656 / BMS483 / MCMA09 / DIK2320 / BM415 / OARJMP08 Chromosome 7 (2 markers): BM1853 / BMS2641 Chromosome 8 (6 markers): DIK4217 / INRA144 / BM4208 / URB024 / EPCDV016 / BMS1967 Chromosome 9 (13 markers): CSSM066 / DIK4230 / MCMA10 / ILSTS11 / EPCDV008 / DIK5287 / LSCV032 / MAF33 / DIK4730 / ILSTS008 / BM302 / MCM42 / OARCP9 Chromosome 10 (8 markers): BMS2252 / BMS712 / CSSM051 / DIK2750 / ILSTS056 / DIK5191 / DIK016 / INRA005 Chromosome 11 (3 markers): HEL10 / IDVGA46 / BM17132 Chromosome 12 (6 markers): HUJ614 / BMS109 / TGLA53 / BMS1185 / IDVGA69 / HUJ625 Chromosome 13 (3 markers): BMS1352 / ILSTS059 / OARAE016 Chromosome 14 (9 markers): TGLA357 / INRA038 / Texan10 / BMS2213 / DIK4059 / BM7109 / DIK4849 / LSCV030 / INRA210 Chromosome 15 (3 markers): MAF65 / BMS2684 / BMS820 Chromosome 16 (10 markers): BM1225 / NRDIKM033 / TGLA126 / BMS2461 / MAF214 / BMS2361 / BM4107 / LSCV008 / DIK059 / MCM150 Chromosome 17 (7 markers): OARVH98 / URB062 / AGLA299 / IL15 / BMS2780 / ILSTS023 / IDVGA40 Chromosome 18 (5 markers): BM3413 / ILSTS052 / BMS2815 / OARHH47 / TGLA122 Chromosome 19 (9 markers): BMS0517 / CSSM006 / INRA194 / DIK4888 / OARAE119 / BM3628 / DIK2716 / DIK612 / LSCV14 Chromosome 20 (3 markers): BM1258 / OLADRB / OARHH56 Chromosome 21 (6 markers): ILSTS019 / MNB034 / DIK2193 / MCM135 / DIK2078 / BMS1948 Chromosome 22 (2 markers): BM4505 / BMS882 Chromosome 23 (4 markers): BMS2526 / BMS0066 / MAF35 / URB31 Chromosome 24 (3 markers): ILSTS102 / INRA206 / BM4005 Chromosome 25 (2 markers): OARVH41 / BMS1714 Chromosome 26 (2 markers): BMS2104 / CSSM43 .

Reported by

Research
INRA - SAGA- BP 52627
31326 Castanet-Tolosan
France
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