Description du projet
Étude de la plasticité développementale assistée par microscopie
Au cours du développement, des facteurs génétiques et épigénétiques interagissent avec des indices environnementaux pour façonner le phénotype de l’organisme. Cette capacité d’adaptation de l’embryon est connue sous le nom de plasticité développementale, mais notre compréhension du processus est limitée. Financé par le Conseil européen de la recherche, le projet SmartMic entend remédier aux limites des outils de microscopie actuels, qui ne peuvent pas systématiquement imager et analyser les embryons en temps réel. Les chercheurs mettront au point une nouvelle plateforme de microscopie à éclairage et détection adaptatifs permettant de se concentrer uniquement sur les données pertinentes. En automatisant le processus et en analysant plusieurs échantillons, ce concept de microscopie intelligente permettra de réaliser des études comparatives à grande échelle en temps réel, faisant ainsi progresser notre compréhension du développement embryonnaire.
Objectif
"Fluorescence microscopy is a key technology in our quest to understand fundamental developmental processes of life. High-resolution images recorded in intact, living organisms deliver insights into the complex interplay of molecules, cells and tissues in real time. Even though the resolution of microscopes has been pushed beyond the diffraction limit, providing important insights into the inner workings of single cells, we still lack an understanding of plasticity in development: How does one embryo differ from another and how can we describe the ""average"", stereotypic embryo?
To address this long-standing multi-disciplinary challenge, we propose to develop an entirely novel microscopy hard- and software platform to systematically image and analyze embryos in real time. We will design and assemble a fast and flexible multimodal light-sheet microscope (SPIM) with adaptive illumination and detection from multiple sides. A fundamentally new concept of this proposal is the ability to adaptively change the recording's spatial and temporal resolution during the experiment: The microscope learns to acquire only the data of interest. Using a high-throughput sample feeder, many samples can be automatically pumped through the microscope and imaged within seconds for large-scale comparative developmental studies. Real-time processing will dramatically reduce the size of the data stream and thus, provide for the first time a platform to collect data from hundreds of samples. At the same time, by establishing a model for the observed embryo, we will integrate information from multiple samples to draw statistically relevant conclusions.
Our ground-breaking concept of smart microscopy speeds up the acquisition, reduces the amount of data and limits photo-toxicity. It enables us to address fundamental questions in embryonic development that are out of reach by traditional methods. Smart microscopy will open up a new field of research: systematic real-time developmental biology."
Champ scientifique
- natural sciencescomputer and information sciencessoftware
- engineering and technologyelectrical engineering, electronic engineering, information engineeringelectronic engineeringcomputer hardwarecomputer processors
- natural sciencesbiological sciencesdevelopmental biology
- natural sciencesphysical sciencesopticsmicroscopy
- medical and health sciencesclinical medicineembryology
Mots‑clés
Programme(s)
Régime de financement
ERC-COG - Consolidator GrantInstitution d’accueil
80539 Munchen
Allemagne