Chromatin dynamics resolved by rapid protein labeling and bioorthogonal capture

Project Information

RAPID

Grant agreement ID: 715024

DOI 10.3030/715024

Project closed

EC signature date 7 December 2016

Start date 1 January 2017

End date 30 June 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 846 360,00

EU contribution € 1 846 360,00

Coordinated by

KAROLINSKA INSTITUTET
Sweden

Publications

Peer reviewed articles (8)

Distinct transcription kinetics of pluripotent cell states

Author(s): Rui Shao; Banushree Kumar; Katja Lidschreiber; Michael Lidschreiber; Patrick Cramer; Simon J Elsässer
Published in: Molecular Systems Biology, Issue 2, 2022, ISSN 1744-4292
Publisher: Nature Publishing Group
DOI: 10.15252/msb.202110407

TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation

Author(s): Paul Stolz; Angelo Salazar Mantero; Andrey Tvardovskiy; Enes Ugur; Lucas E Wange; Christopher B Mulholland; Yuying Cheng; Michael Wierer; Wolfgang Enard; Robert Schneider; Till Bartke; Heinrich Leonhardt; Simon J Elsässer; Sebastian Bultmann
Published in: Nucleic Acid Research, Issue 1, 2022, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkac642

Evolution of epigenetic chromatin states

Author(s): Philip Yuk Kwong Yung, Simon J Elsässer
Published in: Current Opinion in Chemical Biology, Issue 41, 2017, Page(s) 36-42, ISSN 1367-5931
Publisher: Elsevier BV
DOI: 10.1016/j.cbpa.2017.10.001

Polycomb repressive complex 2 shields naïve human pluripotent cells from trophectoderm differentiation

Author(s): Banushree Kumar, Carmen Navarro, Nerges Winblad, John P. Schell, Cheng Zhao, Jere Weltner, Laura Baqué-Vidal, Angelo Salazar Mantero, Sophie Petropoulos, Fredrik Lanner & Simon J. Elsässer
Published in: Nature Cell Biology, 2022, ISSN 1465-7392
Publisher: Nature Publishing Group
DOI: 10.1038/s41556-022-00916-w

Engineered human induced pluripotent cells enable genetic code expansion in brain organoids

Author(s): Lea S. van Husen, Anna-Maria Katasori, Birthe Meineke, Lars O. Tjernberg, Sophia Schedin-Weiss, Simon J Elsässer
Published in: ChemBioChem, 2021, ISSN 1439-4227
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/cbic.202100399

Methanomethylophilus alvus Mx1201 Provides Basis for Mutual Orthogonal Pyrrolysyl tRNA/Aminoacyl-tRNA Synthetase Pairs in Mammalian Cells

Author(s): Birthe Meineke, Johannes Heimgärtner, Lorenzo Lafranchi, Simon J. Elsässer
Published in: ACS Chemical Biology, Issue 13/11, 2018, Page(s) 3087-3096, ISSN 1554-8929
Publisher: American Chemical Society
DOI: 10.1021/acschembio.8b00571

An embryonic stem cell-specific heterochromatin state promotes core histone exchange in the absence of DNA accessibility

Author(s): Carmen Navarro, Jing Lyu, Anna-Maria Katsori, Rozina Caridha, Simon J. Elsässer
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-020-18863-1

Quantitative Multiplexed ChIP Reveals Global Alterations that Shape Promoter Bivalency in Ground State Embryonic Stem Cells

Author(s): Banushree Kumar, Simon J. Elsässer
Published in: Cell Reports, Issue 28/12, 2019, Page(s) 3274-3284.e5, ISSN 2211-1247
Publisher: Cell Press
DOI: 10.1016/j.celrep.2019.08.046

Other (1)

Polycomb Repressive Complex 2 shields naïve human pluripotent cells from trophectoderm differentiation

Author(s): Banushree Kumar, Carmen Navarro, Nerges Winblad, John P Schell, Cheng Zhao, Fredrik Lanner, Simon J Elsässer
Published in: bioRxiv preprint, 2021
Publisher: bioRxiv
DOI: 10.1101/2021.08.21.457215

Book chapters (1)

Generation of Stable Amber Suppression Cell Lines

Author(s): Simon J. Elsässer
Published in: Noncanonical Amino Acids, Issue 1728, 2018, Page(s) 237-245, ISBN 978-1-4939-7573-0
Publisher: Springer New York
DOI: 10.1007/978-1-4939-7574-7_15