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Proteomics Standards International Molecular Exchange - Systematic Capture of Published Molecular Interaction Data

Objective

The aim of the PSIMEx proposal is to systematically make published molecular interaction data computationally accessible. We plan to further develop the existing standard for molecular interactions developed by the HUPO Proteomics Standards Initiative, and to promote its implementation in the entire chain from experiment planning via data formatting and analysis to data representation in journal publications and public databases. Key aspects will be the dissemination of and user training on minimum requirements for publication of molecular interaction data; the further development of the PSI-MI standard for representation of data fulfilling these minimal requirements; the specification of efficient data deposition tools and data flow from data producers to public repositories as part of the publication process; implementation of international data exchange among databases; training and exchange of curation staff in the participating databases; and the definition of analysis tools for the efficient use of data following the PSI-MI standards.
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Coordinator

EUROPEAN MOLECULAR BIOLOGY LABORATORY

Address

Meyerhofstrasse 1
69117 Heidelberg

Germany

Activity type

Research Organisations

EU Contribution

€ 859 341

Administrative Contact

Tom Ratcliff (Mr.)

Participants (14)

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UNIVERSITA DEGLI STUDI DI ROMA TOR VERGATA

Italy

EU Contribution

€ 191 530

THE REGENTS OF THE UNIVERSITY OF CALIFORNIA

United States

EU Contribution

€ 161 035

SIB INSTITUT SUISSE DE BIOINFORMATIQUE

Switzerland

EU Contribution

€ 63 130

MACMILLAN PUBLISHERS LTD

United Kingdom

WILEY-VCH VERLAG GMBH & CO KGAA

Germany

GE HEALTHCARE BIO-SCIENCES AB

Sweden

EU Contribution

€ 31 244

THE UNIVERSITY OF EDINBURGH

United Kingdom

EU Contribution

€ 31 030

University of Maryland Biotechnology Institute

United States

FUNDACION DE INVESTIGACION DEL CANCER DE LA UNIVERSIDAD DE SALAMANCA

Spain

EU Contribution

€ 26 750

TECHNISCHE UNIVERSITAET MUENCHEN

Germany

EU Contribution

€ 32 285

HELMHOLTZ ZENTRUM MUENCHEN DEUTSCHES FORSCHUNGSZENTRUM FUER GESUNDHEIT UND UMWELT GMBH

Germany

EU Contribution

€ 6 316

CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS

France

EU Contribution

€ 37 450

SHANGHAI CENTER FOR BIOINFORMATION TECHNOLOGY

China

EU Contribution

€ 19 260

J. CRAIG VENTER INSTITUTE INC CORPORATION

United States

EU Contribution

€ 17 013

Project information

Grant agreement ID: 223411

Status

Closed project

  • Start date

    1 March 2009

  • End date

    31 August 2013

Funded under:

FP7-HEALTH

  • Overall budget:

    € 1 748 045,92

  • EU contribution

    € 1 476 384

Coordinated by:

EUROPEAN MOLECULAR BIOLOGY LABORATORY

Germany