Advanced toolbox for rapid and cost-effective functional metagenomic screening - microbiology meets microfluidics. | METAFLUIDICS | Project | Results | H2020 | CORDIS

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Certifications for biosafety, GMO manipulation, animal experimentation

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Publikacje

Cecembia

Autorzy: Albuquerque Luciana; Rainey Fred; Egas Conceiçao; Froufe Hugo; Raposo Pedro; Da Costa, S, Milton
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 6, 2018
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458277

Albidovulum

Autorzy: Albuquerque Luciana; Froufre Hugo; Conceiçao Egas; Rainy Fred; Da Costa, S
Opublikowane w: Whitman, WB (Ed), Bergey's Manual of Systematics of Archaea and Bacteria, Numer 9, 2018
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458176

Meiothermus

Autorzy: Albuquerque Luciana; Rainey Fred; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 8, 2018
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458314

Pullulanibacillus

Autorzy: Albuquerque Luciana; Tiago Igor; Veríssimo António; Da Costa, S, Milton
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 9, 2019
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458514

Hydrotalea

Autorzy: Albuquerque Luciana; Egas Conceição; Froufe Hugo; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 7, 2019
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458512

Tepidicella

Autorzy: Albuquerque Luciana; Rainey Fred; Da Costa, S, Milton
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 6, 2019
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458506

Salirhabdus

Autorzy: Albuquerque Luciana; Igor, Tiago; António, Veríssimo; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 1, 2019
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458495

Gaiella

Autorzy: Albuquerque Luciana; Rainey Fred; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 2, 2018
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458297

Aquicella

Autorzy: Albuquerque Luciana; Rainey, Fred; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 13, 2018
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458275

Rubritepida

Autorzy: Albuquerque Luciana; Egas Conceiçao; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 11, 2019
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458332

Truepera

Autorzy: Albuquerque Luciana; Rainey Fred; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 6, 2018
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458508

Tepidamorphus

Autorzy: Albuquerque Luciana; Rainey Fred; Da Costa, S
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 10, 2018
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458498

Eliorea

Autorzy: Da Costa, S; Albuquerque Luciana; Rainey Fred; Froufe Hugo; Roxo Inês; Raposo Pedro; Egas Conceiçao
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, Numer 2, 2019
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458286

Herminiimonas

Autorzy: Albuquerque Luciana; Rainey Fred; Da Costa, S, Milton
Opublikowane w: Bergey's Manual of Systematics of Archaea and Bacteria, 2019
Wydawca: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458306

Investigating host-microbiome interactions by droplet based microfluidics

Autorzy: Alexandra S. Tauzin, Mariana Rangel Pereira, Liisa D. Van Vliet, Pierre-Yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, Bernard Henrissat, Nicolas Terrapon, Vincent Lombard, Marion Leclerc, Joël Doré, Florian Hollfelder, Gabrielle Potocki-Veronese
Opublikowane w: Microbiome, Numer 8/1, 2020, ISSN 2049-2618
Wydawca: Springer Nature
DOI: 10.1186/s40168-020-00911-z

A Modular Vector Toolkit with a Tailored Set of Thermosensors To Regulate Gene Expression in Thermus thermophilus

Autorzy: Carlos Verdú, Esther Sanchez, Carmen Ortega, Aurelio Hidalgo, José Berenguer, Mario Mencía
Opublikowane w: ACS Omega, Numer 4/11, 2019, Strona(/y) 14626-14632, ISSN 2470-1343
Wydawca: American Chemical Society Publications (ACS Publications)
DOI: 10.1021/acsomega.9b02107

Investigating Host Microbiota Relationships Through Functional Metagenomics

Autorzy: Elisabeth Laville, Josette Perrier, Nada Bejar, Marc Maresca, Jeremy Esque, Alexandra S. Tauzin, Emna Bouhajja, Marion Leclerc, Elodie Drula, Bernard Henrissat, Stephane Berdah, Eric Di Pasquale, Patrick Robe, Gabrielle Potocki-Veronese
Opublikowane w: Frontiers in Microbiology, Numer 10, 2019, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2019.01286

Complete Genome Sequence of Mycolicibacterium hassiacum DSM 44199.

Autorzy: Alba Blesa; Eva Sacristán-Horcajada; José Berenguer; Mercedes Sánchez
Opublikowane w: Microbiology Resource Anouncements, Numer 3, 2019, Strona(/y) e01522-18, ISSN 2576-098X
Wydawca: AMERICAN SOCIETY FOR MICROBIOLOGY
DOI: 10.1128/mra.01522-18

Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries

Autorzy: Zulema Udaondo, Estrella Duque, Abdelali Daddaoua, Carlos Caselles, Amalia Roca, Paloma Pizarro‐Tobias, Juan L. Ramos
Opublikowane w: Environmental Microbiology, Numer 22/8, 2020, Strona(/y) 3561-3571, ISSN 1462-2912
Wydawca: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15138

Novel Genes Involved in Resistance to Both Ultraviolet Radiation and Perchlorate From the Metagenomes of Hypersaline Environments

Autorzy: María Lamprecht-Grandío, Marta Cortesão, Salvador Mirete, Macarena Benguigui de la Cámara, Carolina G. de Figueras, Danilo Pérez-Pantoja, Joseph John White, María Eugenia Farías, Ramon Rosselló-Móra, José Eduardo González-Pastor
Opublikowane w: Frontiers in Microbiology, Numer 11, 2020, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2020.00453

Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria

Autorzy: Zhi Wang, Alexandra S. Tauzin, Elisabeth Laville, Pietro Tedesco, Fabien Létisse, Nicolas Terrapon, Pascale Lepercq, Myriam Mercade, Gabrielle Potocki-Veronese
Opublikowane w: mSphere, Numer 5/1, 2020, ISSN 2379-5042
Wydawca: American Society for Microbiology
DOI: 10.1128/msphere.00771-19

Effect of design geometry, exposure energy, cytophilic molecules, cell type and load in fabrication of single-cell arrays using micro-contact printing

Autorzy: Swapnil Vilas Bhujbal, Maren Dekov, Vegar Ottesen, Karen Dunker, Rahmi Lale, Marit Sletmoen
Opublikowane w: Scientific Reports, Numer 10/1, 2020, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-020-72080-w

In Vitro Synthesis and Crystallization of β-1,4-Mannan

Autorzy: Florent Grimaud, Sandra Pizzut-Serin, Laurence Tarquis, Simon Ladevèze, Sandrine Morel, Jean-Luc Putaux, Gabrielle Potocki-Veronese
Opublikowane w: Biomacromolecules, Numer 20/2, 2018, Strona(/y) 846-853, ISSN 1525-7797
Wydawca: American Chemical Society
DOI: 10.1021/acs.biomac.8b01457

Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Autorzy: Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego P. Morgavi, Gabrielle Potocki-Veronese
Opublikowane w: Microbial Genomics, Numer 6/10, 2020, ISSN 2057-5858
Wydawca: Microbiology Society
DOI: 10.1099/mgen.0.000404

Use of photoswitchable fluorescent proteins for droplet-based microfluidic screening

Autorzy: Adilya Dagkesamanskaya, Krzysztof Langer, Alexandra S. Tauzin, Catherine Rouzeau, Delphine Lestrade, Gabrielle Potocki-Veronese, Laurent Boitard, Jérôme Bibette, Jean Baudry, Denis Pompon, Véronique Anton-Leberre
Opublikowane w: Journal of Microbiological Methods, Numer 147, 2018, Strona(/y) 59-65, ISSN 0167-7012
Wydawca: Elsevier BV
DOI: 10.1016/j.mimet.2018.03.001

Mechanisms and Regulation of Extracellular DNA Release and Its Biological Roles in Microbial Communities

Autorzy: Alejandra L. Ibáñez de Aldecoa, Olga Zafra, José E. González-Pastor
Opublikowane w: Frontiers in Microbiology, Numer 8, 2017, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2017.01390

Role of Archaeal HerA Protein in the Biology of the Bacterium Thermus thermophilus

Autorzy: Alba Blesa, Nieves Quintans, Ignacio Baquedano, Carlos Mata, José Castón, José Berenguer
Opublikowane w: Genes, Numer 8/5, 2017, Strona(/y) 130, ISSN 2073-4425
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes8050130

Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp.

Autorzy: Alba Blesa, Mercedes Sánchez, Eva Sacristán-Horcajada, Sandra González-de la Fuente, Ramón Peiró, José Berenguer
Opublikowane w: Microorganisms, Numer 7/1, 2019, Strona(/y) 25, ISSN 2076-2607
Wydawca: MDPI
DOI: 10.3390/microorganisms7010025

Raineya orbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum Bacteroidetes and the description of Raineyaceae fam. nov.

Autorzy: Luciana Albuquerque, Ana Rita M. Polónia, Cristina Barroso, Hugo J. C. Froufe, Olga Lage, Alexandre Lobo-da-Cunha, Conceição Egas, Milton S. da Costa
Opublikowane w: International Journal of Systematic and Evolutionary Microbiology, Numer 68/4, 2018, Strona(/y) 982-989, ISSN 1466-5026
Wydawca: Society for General Microbiology
DOI: 10.1099/ijsem.0.002556

Vibrio communities in scleractinian corals differ according to health status and geographic location in the Mediterranean Sea

Autorzy: Esther Rubio-Portillo, Juan F. Gago, Manuel Martínez-García, Luigi Vezzulli, Ramon Rosselló-Móra, Josefa Antón, Alfonso A. Ramos-Esplá
Opublikowane w: Systematic and Applied Microbiology, Numer 41/2, 2018, Strona(/y) 131-138, ISSN 0723-2020
Wydawca: Elsevier BV
DOI: 10.1016/j.syapm.2017.11.007

Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea

Autorzy: Esther Rubio-Portillo, Diego K. Kersting, Cristina Linares, Alfonso A. Ramos-Esplá, Josefa Antón
Opublikowane w: Frontiers in Microbiology, Numer 9, 2018, ISSN 1664-302X
Wydawca: Frontiers Media
DOI: 10.3389/fmicb.2018.00022

Discovery of carbamate degrading enzymes by functional metagenomics

Autorzy: Lisa Ufarté, Elisabeth Laville, Sophie Duquesne, Diego Morgavi, Patrick Robe, Christophe Klopp, Angeline Rizzo, Sandra Pizzut-Serin, Gabrielle Potocki-Veronese
Opublikowane w: PLOS ONE, Numer 12/12, 2017, Strona(/y) e0189201, ISSN 1932-6203
Wydawca: Public Library of Science
DOI: 10.1371/journal.pone.0189201

Hierarchical Control of Nitrite Respiration by Transcription Factors Encoded within Mobile Gene Clusters of Thermus thermophilus

Autorzy: Laura Alvarez, Nieves G. Quintáns, Alba Blesa, Ignacio Baquedano, Mario Mencía, Carlos Bricio, José Berenguer
Opublikowane w: Genes, Numer 8/12, 2017, Strona(/y) 361, ISSN 2073-4425
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes8120361

Solimicrobium silvestre gen. nov., sp. nov., isolated from alpine forest soil

Autorzy: Rosa Margesin, Luciana Albuquerque, De-Chao Zhang, Hugo J. C. Froufe, Rita Severino, Inês Roxo, Conceição Egas, Milton S. da Costa
Opublikowane w: International Journal of Systematic and Evolutionary Microbiology, Numer 68/8, 2018, Strona(/y) 2491-2498, ISSN 1466-5026
Wydawca: Society for General Microbiology
DOI: 10.1099/ijsem.0.002861

Transfer of Meiothermus chliarophilus (Tenreiro et al.1995) Nobre et al. 1996, Meiothermus roseus Ming et al. 2016, Meiothermus terrae Yu et al. 2014 and Meiothermus timidus Pires et al. 2005, to Calidithermus gen. nov., as Calidithermus chliarophilus comb. nov., Calidithermus roseus comb. nov., Calidithermus terrae comb. nov. and Calidithermus timidus comb. nov., respectively, and emended descrip

Autorzy: Pedro Raposo, Tomeu Viver, Luciana Albuquerque, Hugo Froufe, Cristina Barroso, Conceição Egas, Ramon Rosselló-Móra, Milton S. da Costa
Opublikowane w: International Journal of Systematic and Evolutionary Microbiology, Numer 69/4, 2019, Strona(/y) 1060-1069, ISSN 1466-5026
Wydawca: Society for General Microbiology
DOI: 10.1099/ijsem.0.003270

High‐quality draft genome sequence of Gaiella occulta isolated from a 150 meter deep mineral water borehole and comparison with the genome sequences of other deep‐branching lineages of the phylum Actinobacteria

Autorzy: Rita Severino, Hugo J. C. Froufe, Cristina Barroso, Luciana Albuquerque, Alexandre Lobo‐da‐Cunha, Milton S. da Costa, Conceição Egas
Opublikowane w: MicrobiologyOpen, 2019, Strona(/y) e840, ISSN 2045-8827
Wydawca: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.840

Are in vivo selections on the path to extinction?

Autorzy: Berenguer, José; Mencía, Mario; Hidalgo, Aurelio
Opublikowane w: Microbial Biotechnology, Numer 1, 2017, Strona(/y) 46-49, ISSN 1751-7915
Wydawca: Wiley
DOI: 10.1111/1751-7915.12490

Virulence as a Side Effect of Interspecies Interaction in Vibrio Coral Pathogens.

Autorzy: Josefa Antón; Andrés Mauricio Caraballo-Rodríguez; Forest Rohwer; Ana B. Martin-Cuadrado; Esther Rubio-Portillo; Esther Rubio-Portillo; Pieter C. Dorrestein
Opublikowane w: mBio, Numer 1, 2020, ISSN 2150-7511
Wydawca: American Society for Microbiology
DOI: 10.1128/mbio.00201-20

Comparative genome sequence analysis of several species in the genus Tepidimonas and the description of a novel species Tepidimonas charontis sp. nov.

Autorzy: Luciana Albuquerque, Nadine Castelhano, Pedro Raposo, Hugo J. C. Froufe, Igor Tiago, Rita Severino, Inês Roxo, Inês Gregório, Cristina Barroso, Conceição Egas, Milton S. da Costa
Opublikowane w: International Journal of Systematic and Evolutionary Microbiology, Numer 70/3, 2020, Strona(/y) 1596-1604, ISSN 1466-5026
Wydawca: Society for General Microbiology
DOI: 10.1099/ijsem.0.003942

Análisis del Pangenoma de Pseudomonas putida

Autorzy: Udaondo Domínguez, Zulema
Opublikowane w: Numer 1, 2016
Wydawca: Universidad de Granada

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Numer wniosku/publikacji: 18 382861
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STRAINS CAPABLE OF PRODUCING PLANT GROWTH-STIMULATING COMPOUNDS

Numer wniosku/publikacji: 18 382933
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MODULATION OF GENE EXPRESSION

Numer wniosku/publikacji: 20 18058227
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Advanced toolbox for rapid and cost-effective functional metagenomic screening - microbiology meets microfluidics.

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