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The dynamics of the mammalian epigenome during transcription factor-induced cell fate conversion

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Transcription Factors Orchestrate Dynamic Interplay Between Genome Topology And Gene Regulation During Cell Reprogramming

Author(s): Ralph Stadhouders, Enrique Vidal, François Serra, Bruno Di Stefano, François Le Dily, Javier Quilez, Antonio Gomez, Samuel Collombet, Clara Berenguer, Yasmina Cuartero, Jochen Hecht, Guillaume Filion, Miguel Beato, Marc A. Marti-Renom, Thomas Graf
Published in: bioRxiv, 2017
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/132456

Managing The Analysis Of High-Throughput Sequencing Data

Author(s): Javier Quilez, Enrique Vidal, Francois Le Dily, Francois Serra, Yasmina Cuartero, Ralph Stadhouders, Guillaume Filion, Thomas Graf, Marc A. Marti-Renom, Miguel Beato
Published in: bioRxiv, 2017
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/136358

Systemic Human ILC Precursors Provide a Substrate for Tissue ILC Differentiation

Author(s): Ai Ing Lim, Yan Li, Silvia Lopez-Lastra, Ralph Stadhouders, Franziska Paul, Armanda Casrouge, Nicolas Serafini, Anne Puel, Jacinta Bustamante, Laura Surace, Guillemette Masse-Ranson, Eyal David, Helene Strick-Marchand, Lionel Le Bourhis, Roberto Cocchi, Davide Topazio, Paolo Graziano, Lucia Anna Muscarella, Lars Rogge, Xavier Norel, Jean-Michel Sallenave, Matthieu Allez, Thomas Graf, Rudi W. Hendr
Published in: Cell, 168/6, 2017, Page(s) 1086-1100.e10, ISSN 0092-8674
Publisher: Cell Press
DOI: 10.1016/j.cell.2017.02.021

C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4

Author(s): Bruno Di Stefano, Samuel Collombet, Janus Schou Jakobsen, Michael Wierer, Jose Luis Sardina, Andreas Lackner, Ralph Stadhouders, Carolina Segura-Morales, Mirko Francesconi, Francesco Limone, Matthias Mann, Bo Porse, Denis Thieffry, Thomas Graf
Published in: Nature Cell Biology, 18/4, 2016, Page(s) 371-381, ISSN 1465-7392
Publisher: Nature Publishing Group
DOI: 10.1038/ncb3326