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Photoacoustic/Ultrasound Mammoscopy for evaluating screening-detected abnormalities in the breast

Deliverables

Training material/videos available on website (Mo 24)

Training material will address the various PAMMOTH technologies, target group are students.

Publications

Efficient Low-Resource Compression of HIFU Data

Author(s): Petr Kleparnik, David Barina, Pavel Zemcik, Jiri Jaros
Published in: Information, Issue 9/7, 2018, Page(s) 155, ISSN 2078-2489
DOI: 10.3390/info9070155

A hierarchical Bayesian perspective on majorization-minimization for non-convex sparse regression: application to M/EEG source imaging

Author(s): Yousra Bekhti, Felix Lucka, Joseph Salmon, Alexandre Gramfort
Published in: Inverse Problems, Issue 34/8, 2018, Page(s) 085010, ISSN 0266-5611
DOI: 10.1088/1361-6420/aac9b3

Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography

Author(s): Andreas Hauptmann, Felix Lucka, Marta Betcke, Nam Huynh, Jonas Adler, Ben Cox, Paul Beard, Sebastien Ourselin, Simon Arridge
Published in: IEEE Transactions on Medical Imaging, Issue 37/6, 2018, Page(s) 1382-1393, ISSN 0278-0062
DOI: 10.1109/TMI.2018.2820382

A Partially Learned Algorithm for Joint Photoacoustic Reconstruction and Segmentation

Author(s): Yoeri E. Boink, Srirang Manohar, Christoph Brune
Published in: IEEE Transactions on Medical Imaging, 2019, Page(s) 1-1, ISSN 0278-0062
DOI: 10.1109/TMI.2019.2922026

Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods

Author(s): Elliott S. Wise, B. T. Cox, Jiri Jaros, Bradley E. Treeby
Published in: The Journal of the Acoustical Society of America, Issue 146/1, 2019, Page(s) 278-288, ISSN 0001-4966
DOI: 10.1121/1.5116132

Laser generated ultrasound sources using carbon-polymer nanocomposites for high frequency metrology

Author(s): Srinath Rajagopal, Toby Sainsbury, Bradley E. Treeby, Ben T. Cox
Published in: The Journal of the Acoustical Society of America, Issue 144/2, 2018, Page(s) 584-597, ISSN 0001-4966
DOI: 10.1121/1.5048413

Enhancing Compressed Sensing 4D Photoacoustic Tomography by Simultaneous Motion Estimation

Author(s): Felix Lucka, Nam Huynh, Marta Betcke, Edward Zhang, Paul Beard, Ben Cox, Simon Arridge
Published in: SIAM Journal on Imaging Sciences, Issue 11/4, 2018, Page(s) 2224-2253, ISSN 1936-4954
DOI: 10.1137/18m1170066

Single-pixel camera photoacoustic tomography

Author(s): Nam Huynh, Felix Lucka, Edward Zhang, Marta Betcke, Simon R. Arridge, Paul C. Beard, Benjamin T. Cox
Published in: Journal of Biomedical Optics, Issue 24/12, 2019, Page(s) 1, ISSN 1083-3668
DOI: 10.1117/1.jbo.24.12.121907

Real‐time cardiovascular MR with spatio‐temporal artifact suppression using deep learning–proof of concept in congenital heart disease

Author(s): Andreas Hauptmann, Simon Arridge, Felix Lucka, Vivek Muthurangu, Jennifer A. Steeden
Published in: Magnetic Resonance in Medicine, Issue 81/2, 2018, Page(s) 1143-1156, ISSN 0740-3194
DOI: 10.1002/mrm.27480

Estimating blood oxygenation from photoacoustic images: can a simple linear spectroscopic inversion ever work?

Author(s): Roman Hochuli, Lu An, Paul C. Beard, Benjamin T. Cox
Published in: Journal of Biomedical Optics, Issue 24/12, 2019, Page(s) 1, ISSN 1083-3668
DOI: 10.1117/1.jbo.24.12.121914

Equivalent-Source Acoustic Holography for Projecting Measured Ultrasound Fields Through Complex Media

Author(s): Bradley Treeby, Felix Lucka, Eleanor Martin, B. T. Cox
Published in: IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, Issue 65/10, 2018, Page(s) 1857-1864, ISSN 0885-3010
DOI: 10.1109/tuffc.2018.2861895

Spatially compounded plane wave imaging using a laser-induced ultrasound source

Author(s): David Thompson, Damien Gasteau, Srirang Manohar
Published in: Photoacoustics, Issue 18, 2020, Page(s) 100154, ISSN 2213-5979
DOI: 10.1016/j.pacs.2019.100154

Current and future trends in photoacoustic breast imaging

Author(s): Srirang Manohar, Maura Dantuma
Published in: Photoacoustics, Issue 16, 2019, Page(s) 100134, ISSN 2213-5979
DOI: 10.1016/j.pacs.2019.04.004

A framework for directional and higher-order reconstruction in photoacoustic tomography

Author(s): Yoeri E Boink, Marinus J Lagerwerf, Wiendelt Steenbergen, Stephan A van Gils, Srirang Manohar, Christoph Brune
Published in: Physics in Medicine & Biology, Issue 63/4, 2018, Page(s) 045018, ISSN 1361-6560
DOI: 10.1088/1361-6560/aaaa4a

Twente Photoacoustic Mammoscope 2: system overview and three-dimensional vascular network images in healthy breasts

Author(s): Sjoukje M. Schoustra, Daniele Piras, Roeland Huijink, Tim J. P. M. op ‘t Root, Laurens Alink, Wouter Muller Kobold, Wiendelt Steenbergen, Srirang Manohar
Published in: Journal of Biomedical Optics, Issue 24/12, 2019, Page(s) 1, ISSN 1083-3668
DOI: 10.1117/1.jbo.24.12.121909

Semi-anthropomorphic photoacoustic breast phantom

Author(s): Maura Dantuma, Rianne van Dommelen, Srirang Manohar
Published in: Biomedical Optics Express, Issue 10/11, 2019, Page(s) 5921, ISSN 2156-7085
DOI: 10.1364/boe.10.005921

GPU-accelerated Simulation of Elastic Wave Propagation

Author(s): Kristian Kadlubiak; Jiri Jaros; Bradley E. Treeby
Published in: International Supercomputing Conference 2018, 2018

Running Large-Scale Ultrasound Simulations on 256 Salomon Nodes

Author(s): Filip Vaverka; Bradley E. Treeby; Jiri Jaros
Published in: 1st Users Conference of IT4Innovations, 2017

Running Large-Scale Ultrasound Simulations on Piz Daint with 512 Pascal GPUs

Author(s): Filip Vaverka; Bradley E. Treeby; Jiri Jaros
Published in: The International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing 2017), 2017

Framework for Planning, Executing and Monitoring Cooperating Computations

Author(s): Marta Cudova; Jiri Jaros
Published in: 1st Users Conference of IT4Innovations, 2017

Single-step Calculation of the Acoustic Field from Arbitrary Continuous-wave Sources

Author(s): Bradley E. Treeby; Jakub Budisky; Elliott S. Wise; Jiri Jaros; Ben T. Cox
Published in: 1st Users Conference of IT4Innovations, 2017

Simulation of Ultrasound Propagation in Bone

Author(s): Kristian Kadlubiak; Bradley E. Treeby; Jiri Jaros
Published in: 1st Users Conference of IT4Innovations, 2017

Adaptive Execution Planning in Biomedical Workflow Management Systems

Author(s): Marta Jaros, Bradley E. Treeby, Jiri Jaros
Published in: SC19: The International Conference for High Performance Computing, Networking, Storage, and Analysis, 2019

Advancements in Ultrasound Simulations Enabled by High-Bandwidth GPU Interconnects

Author(s): Filip Vaverka, Bradley E. Treeby, Jiri Jaros
Published in: SC19: The International Conference for High Performance Computing, Networking, Storage, and Analysis, 2019

Forward model for quantitative pulse-echo speed-of-sound imaging

Author(s): Stähli, Patrick; Kuriakose, Maju; Frenz, Martin; Jaeger, Michael
Published in: arXiv, Issue 27 Feb 2019, 2019

Design of HIFU treatment plans using an evolutionary strategy

Author(s): Marta Cudova, Bradley E. Treeby, Jiri Jaros
Published in: Proceedings of the Genetic and Evolutionary Computation Conference Companion on - GECCO '18, 2018, Page(s) 1568-1575
DOI: 10.1145/3205651.3208268

Effect of Backing on Carbon-Polymer Nanocomposite Sources for Laser Generation of Broadband Ultrasound Pulses

Author(s): Srinath Rajagopal, Bradley E. Treeby, Ben T. Cox
Published in: 2018 IEEE International Ultrasonics Symposium (IUS), 2018, Page(s) 1-4
DOI: 10.1109/ultsym.2018.8579784

Accurate Time-Varying Sources in K-Space Pseudospectral Time Domain Acoustic Simulations

Author(s): B.T. Cox, B.E. Treeby
Published in: 2018 IEEE International Ultrasonics Symposium (IUS), 2018, Page(s) 1-4
DOI: 10.1109/ultsym.2018.8580206

GPU-Accelerated Simulation of Elastic Wave Propagation

Author(s): Kristian Kadlubiak, Jiri Jaros, Bradley E. Treeby
Published in: 2018 International Conference on High Performance Computing & Simulation (HPCS), 2018, Page(s) 188-195
DOI: 10.1109/hpcs.2018.00044

A 3D semi-anthropomorphic photoacoustic breast phantom

Author(s): Maura Dantuma, Rianne van Dommelen, Srirang Manohar
Published in: Photons Plus Ultrasound: Imaging and Sensing 2019, Issue Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781P (27 February 2019), 2019, Page(s) 59
DOI: 10.1117/12.2506873

The Twente Photoacoustic Mammoscope 2: 3D vascular network visualization

Author(s): Sjoukje M. Schoustra, Roeland Huijink, Laurens Alink, Tim J. P. M. op 't Root, Daan Sprünken, Daniele Piras, Wouter F. Muller Kobold, Caroline A. H. Klazen, Margreet C. van der Schaaf, Frank M. van den Engh, Wiendelt Steenbergen, Srirang Manohar
Published in: Photons Plus Ultrasound: Imaging and Sensing 2019, Issue Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 1087813 (27 February 2019), 2019, Page(s) 37
DOI: 10.1117/12.2507448

Breast tumor appearances in photoacoustic tomography from fine 3D optical-acoustic simulations (Conference Presentation)

Author(s): Maura Dantuma, Felix Lucka, Jiri Jaros, Bradley E. Teeby, Ben T. Cox, Srirang Manohar
Published in: Photons Plus Ultrasound: Imaging and Sensing 2019, Issue Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781I (4 March 2019), 2019, Page(s) 52
DOI: 10.1117/12.2509308

International Photoacoustic Standardisation Consortium (IPASC): overview (Conference Presentation)

Author(s): Sarah Bohndiek, Joanna Brunker, Janek Gröhl, Lina Hacker, James Joseph, William C. Vogt, Paolo Armanetti, Hisham Assi, Jeffrey C. Bamber, Paul C. Beard, Thomas Berer, Richard Bouchard, Kimberly A. Briggman, Lucia Cavigli, Bryan Clingman, Ben T. Cox, Adrien E. Desjardins, Andrew Heinmiller, Jeesong Hwang, Eno Hysi, Aoife Ivory, Jithin Jose, Thomas Kirchner, Jan Klohs, Lena Maier-Hein, Efthymios Ma
Published in: Photons Plus Ultrasound: Imaging and Sensing 2019, Issue Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781N (4 March 2019), 2019, Page(s) 57
DOI: 10.1117/12.2506044

Plane wave and synthetic transmit aperture echography using laser-induced ultrasound (Conference Presentation)

Author(s): David Thompson, Libertario Demi, Erik Kruit, Damien Gasteau, Marieke Olsman, Srirang Manohar
Published in: Photons Plus Ultrasound: Imaging and Sensing 2019, Issue Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781A (4 March 2019), 2019, Page(s) 44
DOI: 10.1117/12.2509690

Robustness of a partially learned photoacoustic reconstruction algorithm

Author(s): Yoeri Boink, Christoph Brune, Srirang Manohar
Published in: Photons Plus Ultrasound: Imaging and Sensing 2019, Issue Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781D (6 March 2019), 2019, Page(s) 47
DOI: 10.1117/12.2507446

Laser-induced ultrasound transmitters for 3D photoacoustic and ultrasound tomography

Author(s): Damien Gasteau, David Thompson, Srirang Manohar
Published in: Opto-Acoustic Methods and Applications in Biophotonics IV, Issue Proc. SPIE 11077, Opto-Acoustic Methods and Applications in Biophotonics IV, 1107716 (19 July 2019), 2019, Page(s) 41
DOI: 10.1117/12.2527011

A semi-anthropomorphic breast phantom with tunable blood oxygenation levels for use in quantitative photoacoustics

Author(s): Maura Dantuma, Javier Ortega Julia, Srirang Manohar
Published in: TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON), Issue TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON), 2019, Page(s) 114-117
DOI: 10.1109/tencon.2019.8929428

Evaluation of the Suitability of Intel Xeon Phi Clusters for the Simulation of Ultrasound Wave Propagation Using Pseudospectral Methods

Author(s): Filip Vaverka, Bradley E. Treeby, Jiri Jaros
Published in: Computational Science – ICCS 2019 - 19th International Conference, Faro, Portugal, June 12–14, 2019, Proceedings, Part III, Issue 11538, 2019, Page(s) 577-590
DOI: 10.1007/978-3-030-22744-9_45