Illuminating Functional Networks and Keystone Species in the Gut

Publications

Peer reviewed articles (8)

Microbial nitrogen limitation in the mammalian large intestine

Author(s): Aspen T. Reese, Fátima C. Pereira, Arno Schintlmeister, David Berry, Michael Wagner, Laura P. Hale, Anchi Wu, Sharon Jiang, Heather K. Durand, Xiyou Zhou, Richard T. Premont, Anna Mae Diehl, Thomas M. O’Connell, Susan C. Alberts, Tyler R. Kartzinel, Robert M. Pringle, Robert R. Dunn, Justin P. Wright, Lawrence A. David
Published in: Nature Microbiology, 2018, ISSN 2058-5276
DOI: 10.1038/s41564-018-0267-7

Vibrational Spectroscopy for Imaging Single Microbial Cells in Complex Biological Samples

Author(s): Jesse P. Harrison, David Berry
Published in: Frontiers in Microbiology, Issue 8, 2017, ISSN 1664-302X
DOI: 10.3389/fmicb.2017.00675

Long-distance electron transport in individual, living cable bacteria

Author(s): Jesper T. Bjerg, Henricus T. S. Boschker, Steffen Larsen, David Berry, Markus Schmid, Diego Millo, Paula Tataru, Filip J. R. Meysman, Michael Wagner, Lars Peter Nielsen, Andreas Schramm
Published in: Proceedings of the National Academy of Sciences, Issue 115/22, 2018, Page(s) 5786-5791, ISSN 0027-8424
DOI: 10.1073/pnas.1800367115

An automated Raman-based platform for the sorting of live cells by functional properties

Author(s): Kang Soo Lee, Márton Palatinszky, Fátima C. Pereira, Jen Nguyen, Vicente I. Fernandez, Anna J. Mueller, Filippo Menolascina, Holger Daims, David Berry, Michael Wagner, Roman Stocker
Published in: Nature Microbiology, Issue 4/6, 2019, Page(s) 1035-1048, ISSN 2058-5276
DOI: 10.1038/s41564-019-0394-9

Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis

Author(s): Simone Herp, Sandrine Brugiroux, Debora Garzetti, Diana Ring, Lara M. Jochum, Markus Beutler, Claudia Eberl, Saib Hussain, Steffi Walter, Roman G. Gerlach, Hans J. Ruscheweyh, Daniel Huson, Mikael E. Sellin, Emma Slack, Buck Hanson, Alexander Loy, John F. Baines, Philipp Rausch, Marijana Basic, André Bleich, David Berry, Bärbel Stecher
Published in: Cell Host & Microbe, Issue 25/5, 2019, Page(s) 681-694.e8, ISSN 1931-3128
DOI: 10.1016/j.chom.2019.03.004

Berry-Enriched Diet in Salt-Sensitive Hypertensive Rats: Metabolic Fate of (Poly)Phenols and the Role of Gut Microbiota

Author(s): Gomes, Oudot, Macià, Foito, Carregosa, Stewart, Van de Wiele, Berry, Motilva, Brenner, dos Santos
Published in: Nutrients, Issue 11/11, 2019, Page(s) 2634, ISSN 2072-6643
DOI: 10.3390/nu11112634

A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome

Author(s): Alessandra Riva, Orest Kuzyk, Erica Forsberg, Gary Siuzdak, Carina Pfann, Craig Herbold, Holger Daims, Alexander Loy, Benedikt Warth, David Berry
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-019-12413-0

Stable-Isotope Probing of Human and Animal Microbiome Function

Author(s): David Berry, Alexander Loy
Published in: Trends in Microbiology, Issue 26/12, 2018, Page(s) 999-1007, ISSN 0966-842X
DOI: 10.1016/j.tim.2018.06.004