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Association of European Marine Biological Laboratories Expanded

Deliverables

Guidelines for standardization of DNA metabarcoding

Guidelines for standardization of DNA metabarcoding

strategy document for establishment of European GO network

strategy document for establishment of European GO network

Risk management plan

Risk management plan

TA-policy document

TA-policy document

Communication and dissemination plan

Communication and dissemination plan

2nd data management plan

2nd data management plan

1st Data management plan

Data management plan

3rd annual access report for the TA programme

3rd annual access report for the TA programme

3rd-year assessment report by international review panel

3rd-year assessment report by international review panel

Protocols for genetic transformation of model organisms

Protocols for genetic transformation of model organisms

Report on RI capacity in value creation, impact and engagement

Report on RI capacity in value creation, impact and engagement

1st annual access report for the TA programme

1st annual access report for the TA programme

3rd year access report on VA-users

3rd year access report on VA-users

Protocols for the deployment of CRISPR/Cas9 system

Protocols for the deployment of CRISPR/Cas9 system

2nd annual access report for the TA programme

2nd annual access report for the TA programme

project website and video

project website and video

Depository of current methodology and discussion forum portal

Depository of current methodology and discussion forum portal

GO data delivered for VA

GO data delivered for VA

"outreach book ""history of marine biological stations"""

"outreach book ""history of marine biological stations"""

Tool-box of methodology and discussion forum portal

Tool-box of methodology and discussion forum portal

1st Virtual access hits to ASSEMBLE plus data resources

Virtual access hits to ASSEMBLE plus data resources

Publications

Nicotine Induces Polyspermy in Sea Urchin Eggs through a Non-Cholinergic Pathway Modulating Actin Dynamics

Author(s): Nunzia Limatola, Filip Vasilev, Luigia Santella, Jong Tai Chun
Published in: Cells, 9/1, 2020, Page(s) 63, ISSN 2073-4409
Publisher: Cells
DOI: 10.3390/cells9010063

Improved Understanding of the Role of Gene and Genome Duplications in Chordate Evolution With New Genome and Transcriptome Sequences

Author(s): Madeleine Emma Aase-Remedios; David E. K. Ferrier
Published in: Frontiers in Ecology and Evolution, Vol 9 (2021), 2296701X, 2021, ISSN 2296-701X
Publisher: FRONTIERS MEDIA SA
DOI: 10.3389/fevo.2021.703163

The Ontology of the Amphioxus Anatomy and Life Cycle (AMPHX)

Author(s): Stephanie Bertrand, João E. Carvalho, Delphine Dauga, Nicolas Matentzoglu, Vladimir Daric, Jr-Kai Yu, Michael Schubert and Hector Escriva
Published in: Front. Cell Dev. Biol., 2296634X, 2021, ISSN 2296-634X
Publisher: Frontiers Media S.A.
DOI: 10.3389/fcell.2021.668025

Assessing the ecological quality status of the highly polluted Bagnoli area (Tyrrhenian Sea, Italy) using foraminiferal eDNA metabarcoding

Author(s): M. Cavaliere; I. Barrenechea Angeles; Marina Montresor; Carla Bucci; L. Brocani; Eszter Balassi; Francesca Margiotta; Fabio Francescangeli; Vincent M.P. Bouchet; Jan Pawlowski; Fabrizio Frontalini
Published in: Science of The Total Environment, 00489697, 2021, ISSN 0048-9697
Publisher: Elsevier BV
DOI: 10.1016/j.scitotenv.2021.147871

Cryopreservation Of Clams For Conservation Of Threatened Fishing Resources

Author(s): Pablo Heres, Jesus Troncoso, Estefania Paredes
Published in: Cryobiology, 91, 2019, Page(s) 186-187, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2019.10.158

And Then There Were Three horizontal ellipsis : Extreme Regeneration Ability of the Solitary Chordate Polycarpa mytiligera

Author(s): Gordon T, Upadhyay AK, Manni L, Huchon D and Shenkar N
Published in: Frontiers in Cell and Developmental Biology, 2296634X, 2021, ISSN 2296-634X
Publisher: Frontiers Media
DOI: 10.3389/fcell.2021.652466

A G protein–coupled receptor mediates neuropeptide-induced oocyte maturation in the jellyfish Clytia

Author(s): Gonzalo Quiroga Artigas, Pascal Lapébie, Lucas Leclère, Philipp Bauknecht, Julie Uveira, Sandra Chevalier, Gáspár Jékely, Tsuyoshi Momose, Evelyn Houliston
Published in: PLOS Biology, 18/3, 2020, Page(s) e3000614, ISSN 1545-7885
Publisher: PLOS Biology
DOI: 10.1371/journal.pbio.3000614

Amphioxus neuroglia: Molecular characterization and evidence for early compartmentalization of the developing nerve cord

Author(s): Matteo Bozzo; Thurston C. Lacalli; Valentina Obino; Federico Caicci; Emanuela Marcenaro; Tiziana Bachetti; Lucia Manni; Mario Pestarino; Michael Schubert; Simona Candiani
Published in: ISSN: 0894-1491, 08941491, 2021, ISSN 0894-1491
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/glia.23982

The type species of the diatom genus <i>Chaetoceros</i>

Author(s): Wiebe H. C. F. Kooistra; Wolf-Henning Kusber; David U. Hernández-Becerril; Marina Montresor; Diana Sarno
Published in: Crossref, 0269249X, 2022, ISSN 0269-249X
Publisher: Biopress Ltd.
DOI: 10.1080/0269249x.2022.2066182

An improved whole life cycle culture protocol for the hydrozoan genetic model Clytia hemisphaerica

Author(s): Marion Lechable; Alexandre Jan; Axel Duchene; Julie Uveira; Brandon Weissbourd; Loann Gissat; Sophie Collet; Laurent Gilletta; Sandra Chevalier; Lucas Leclère; Sophie Peron; Carine Barreau; Regis Lasbleiz; Evelyn Houliston; Tsuyoshi Momose
Published in: Biology Open (2046-6390) (The Company of Biologists), 2020-11 , Vol. 9 , N. 11 , P. bio051268 (13p.), 20466390, 2020, ISSN 2046-6390
Publisher: COMPANY BIOLOGISTS LTD
DOI: 10.1242/bio.051268

Brain Sensory Organs of the Ascidian Ciona robusta: Structure, Function and Developmental Mechanisms

Author(s): Paola Olivo, Antonio Palladino, Filomena Ristoratore, Antonietta Spagnuolo
Published in: Frontiers in Cell and Developmental Biology, 2021, ISSN 2296-634X
Publisher: London Institute of Medical Sciences
DOI: 10.3389/fcell.2021.701779

Measuring Sound at a Cold-Water Coral Reef to Assess the Impact of COVID-19 on Noise Pollution

Author(s): Laurence H. De Clippele, Denise Risch
Published in: Front. Mar. Sci., 22967745, 2021, ISSN 2296-7745
Publisher: FRONTIERS MEDIA SA
DOI: 10.3389/fmars.2021.674702

Overlooked Diversity of Ultramicrobacterial Minorities at the Air-Sea Interface

Author(s): Rahlff, J.; Giebel, H.-A.; Stolle, C.; Wurl, O.; Probst, A.J.; Herlemann, D.P.R
Published in: Atmosphere, 2020, ISSN 2073-4433
Publisher: Rotoweb Cantelli
DOI: 10.3390/atmos11111214

Phylogenetic assessment and systematic revision of the acoel family Isodiametridae

Author(s): Sarah Atherton, Ulf Jondelius
Published in: Zoological Journal of the Linnean Society, 194, 3, 2021, Page(s) 736–760, ISSN 0024-4082
Publisher: Blackwell Publishing Inc.
DOI: 10.1093/zoolinnean/zlab050

Adult moulting and dimorphism in a new species of Sphenoderes (Kinorhyncha: Kentrorhagata)—Is the exception becoming the rule?

Author(s): Martin V. Sørensen, Maria Herranz
Published in: Acta Zoologica, 2020, ISSN 0001-7272
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/azo.12361

Altered actin cytoskeleton in ageing eggs of starfish affects fertilization process

Author(s): Nunzia Limatola, Filip Vasilev, Jong Tai Chun, Luigia Santella
Published in: Experimental Cell Research, 381/2, 2019, Page(s) 179-190, ISSN 0014-4827
Publisher: Academic Press
DOI: 10.1016/j.yexcr.2019.05.007

Animal size and sea water temperature, but not pH, influence a repeatable startle response behaviour in a wide-ranging marine mollusc

Author(s): Jeff C.Clements, KirtiRamesh, JacobNysveen, SamDupont, FredrikJutfelt
Published in: Animal Behaviour, 00033472, 2020, ISSN 0003-3472
Publisher: Academic Press
DOI: 10.1016/j.anbehav.2020.12.008

A morphological and molecular reinvestigation of Janickina pigmentifera (Grassi, 1881) Chatton 1953 - an amoebozoan parasite of arrow-worms (Chaetognatha).

Author(s): Ekaterina Volkova; Alexander Kudryavtsev
Published in: International Journal of Systematic and Evolutionary Microbiology, 14665026, 2021, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.005094

Efficient light-harvesting of mesophotic corals is facilitated by coral optical traits

Author(s): Netanel Kramer; Raz Tamir; Or Ben-Zvi; Steven L. Jacques; Yossi Loya; Daniel Wangpraseurt; Daniel Wangpraseurt
Published in: Scientific Reports, 02698463, 2021, ISSN 0269-8463
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1365-2435.13948

Microplastic retention by marine vegetated canopies: Simulations with seagrass meadows in a hydraulic flume

Author(s): Carmen B. de los Santos, Anna-Sara Krång, Eduardo Infantes
Published in: Environmental Pollution, 2020, Page(s) 116050, ISSN 0269-7491
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.envpol.2020.116050

Science, Diplomacy, and the Red Sea’s Unique Coral Reef: It’s Time for Action

Author(s): Karine Kleinhaus, Ali Al-Sawalmih, Daniel J. Barshis, Amatzia Genin, Lola N. Grace, Ove Hoegh-Guldberg, Yossi Loya, Anders Meibom, Eslam O. Osman, Jean-Daniel Ruch, Yonathan Shaked, Christian R. Voolstra, Assaf Zvuloni, Maoz Fine
Published in: Frontiers in Marine Science, 7, 2020, ISSN 2296-7745
Publisher: Front. Mar. Sci.
DOI: 10.3389/fmars.2020.00090

Non-lethal effects of the predator Meganyctiphanes norvegica and influence of seasonal photoperiod and food availability on the diel feeding behaviour of the copepod Centropages typicus

Author(s): Manuel Olivares, Peter Tiselius, Albert Calbet, Enric Saiz
Published in: Journal of Plankton Research, 2020, ISSN 0142-7873
Publisher: Oxford University Press
DOI: 10.1093/plankt/fbaa051

Insight into the morphology and genetic diversity of the Chaetoceros tenuissimus (Bacillariophyta) species complex

Author(s): Daniel Grzebyk, Vanina Pasqualini, Marie Garrido, Yann Quilichini, Clément Pereto & Philippe Cecchi
Published in: European Journal of Phycolog, 2022, ISSN 0967-0262
Publisher: Taylor & Francis
DOI: 10.1080/09670262.2022.2029949

A microCT-based atlas of the central nervous system and midgut in sea spiders (Pycnogonida) sheds first light on evolutionary trends at the family level

Author(s): Karina Frankowski; Katsumi Miyazaki; Georg Brenneis
Published in: Crossref, 17429994, 2022, ISSN 1742-9994
Publisher: BioMed Central
DOI: 10.1186/s12983-022-00459-8

Diatoms Versus Copepods: Could Frustule Traits Have a Role in Avoiding Predation?

Author(s): Alessandra Petrucciani, Peter Chaerle, Alessandra Norici
Published in: Front. Mar. Sci., 2022, ISSN 2296-7745
Publisher: -
DOI: 10.3389/fmars.2021.804960

Targeted CRISPR-Cas9-based gene knockouts in the model brown alga Ectocarpus

Author(s): Yacine Badis; Delphine Scornet; Minori Harada; Céline Caillard; Olivier Godfroy; Morgane Raphalen; Claire M. M. Gachon; Susana M. Coelho; Taizo Motomura; Chikako Nagasato; J. Mark Cock
Published in: ISSN: 0028-646X, 0028646X, 2021, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.17525

Trans-Atlantic Distribution and Introgression as Inferred from Single Nucleotide Polymorphism: Mussels Mytilus and Environmental Factors

Author(s): Roman Wenne, Małgorzata Zbawicka, Lis Bach, Petr Strelkov, Mikhail Gantsevich, Piotr Kukliński, Tomasz Kijewski, John H. McDonald, Kristil Kindem Sundsaasen, Mariann Árnyasi, Sigbjørn Lien, Ants Kaasik, Kristjan Herkül, Jonne Kotta
Published in: Genes, 11/5, 2020, Page(s) 530, ISSN 2073-4425
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes11050530

Loss of surficial sedimentary carbon stocks in seagrass meadows subjected to intensive clam harvesting

Author(s): Román M, de Los Santos CB, Román S, Santos R, Troncoso JS, Vázquez E, Olabarria C.
Published in: Mar Environ Res., 2022, ISSN 0141-1136
Publisher: Elsevier BV
DOI: 10.1016/j.marenvres.2022.105570

Genetic affinities and biogeography of putative Levantine-endemic seaweed Treptacantha rayssiae (Ramon) M.Mulas, J.Neiva & Á.Israel, comb. nov. (Phaeophyceae)

Author(s): MULAS M., NEIVA J., SADOGURSKA S. S., BALLESTEROS E., SERRÃO E. Á., RILOV G. & ISRAEL Á.
Published in: Cryptogamie, Algologie, 2020, ISSN 0181-1568
Publisher: Museum National d'Histoire Naturelle
DOI: 10.5252/cryptogamie-algologie2020v41a10

The visual pathway in sea spiders (Pycnogonida) displays a simple serial layout with similarities to the median eye pathway in horseshoe crabs

Author(s): Georg Brenneis
Published in: BMC Biology, Vol 20, Iss 1, Pp 1-33 (2022), 17417007, 2022, ISSN 1741-7007
Publisher: BioMed Central
DOI: 10.1186/s12915-021-01212-z

Fungal endophytes vary by species, tissue type, and life cycle stage in intertidal macroalgae

Author(s): Guido Bonthond,Anastasiia Barilo,Ro J. Allen,Michael Cunliffe,Stacy A. Krueger-Hadfield
Published in: Journal of Phycology, 2022, ISSN 1529-8817
Publisher: Phycological Society of America
DOI: 10.1111/jpy.13237

Mineral formation in the primary polyps of pocilloporoid corals

Author(s): Maayan Neder, Pierre Philippe Laissue, Anat Akiva, Derya Akkaynak, Marie Albéric, Oliver Spaeker, Yael Politi, Iddo Pinkas, Tali Mass
Published in: Acta Biomaterialia, 96, 2019, Page(s) 631-645, ISSN 1742-7061
Publisher: Elsevier BV
DOI: 10.1016/j.actbio.2019.07.016

Polyclinum constellatum (Tunicata, Ascidiacea), an emerging non-indigenous species of the Mediterranean Sea: integrated taxonomy and the importance of reliable DNA barcode data

Author(s): MONTESANTO, F., CHIMIENTI, G., GISSI, C., & MASTROTOTARO, F.
Published in: Mediterranean Marine Science, 2022, ISSN 1108-393X
Publisher: National Centre for Marine Research
DOI: 10.12681/mms.28311

Mitochondrial genome sequencing of marine leukaemias reveals cancer contagion between clam species in the Seas of Southern Europe

Author(s): Seila Diaz; Alicia L Bruzos; Daniel Garcia-Souto; Sara Rocha; Ana Pequeño-Valtierra; Camila F Roman-Lewis; Juana Alonso; Rosana Rodriguez; Damian Costas; Jorge Rodriguez-Castro; Antonio Villanueva; Luis Silva; Jose Maria Valencia; Giovanni Annona; Andrea Tarallo; Fernando Ricardo; Ana Bratoš Cetinić; David Posada; Juan Jose Pasantes; Jose MC Tubio
Published in: eLife, Vol 11 (2022), 2050084X, 2022, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.66946

Single and combined potential of polystyrene microparticles and fluoranthene in the induction of DNA damage in haemocytes of Mediterranean mussel (Mytilus galloprovincialis)

Author(s): Stoimir Kolarević, Margareta Kračun-Kolarević, Jovana Jovanović Marić, Jelena Djordjević, Branka Vuković-Gačić, Danijela Joksimović, Rajko Martinović, Oliver Bajt, Andreja Ramšak
Published in: Mutagenesis, 2022, ISSN 0267-8357
Publisher: Oxford University Press
DOI: 10.1093/mutage/geac017

Improving eDNA-based protist diversity assessments using networks of amplicon sequence variants

Author(s): Dominik Forster,Guillaume Lentendu,Sabine Filker,Elyssa Dubois,Thomas A. Wilding,Thorsten Stoeck
Published in: Environmental Microbiology, 2019, ISSN 1462-2912
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.14764

Functional Conservation and Genetic Divergence of Chordate Glycinergic Neurotransmission: Insights from Amphioxus Glycine Transporters

Author(s): Matteo Bozzo; Simone Costa; Valentina Obino; Tiziana Bachetti; Emanuela Marcenaro; Mario Pestarino; Michael Schubert; Simona Candiani
Published in: https://www.preprints.org/manuscript/202110.0348/v1, 20734409, 2021, ISSN 2073-4409
Publisher: MDPI
DOI: 10.20944/preprints202110.0348.v1

The Bacterial and Fungal Microbiota of Saccharina latissima (Laminariales, Phaeophyceae)

Author(s): Anne Tourneroche, Raphaël Lami, Gaëtan Burgaud, Isabelle Domart-Coulon, Wei Li, Claire Gachon, Marc Gèze, Dominique Boeuf, Soizic Prado
Published in: Frontiers in Marine Science, 2020, ISSN 2296-7745
Publisher: Lausanne: Frontiers Media S.A., 2014-
DOI: 10.3389/fmars.2020.587566

Temporal changes of genetic structure and diversity in a marine diatom genus discovered via metabarcoding

Author(s): Maria Valeria Ruggiero,Wiebe H.C.F. Kooistra,Roberta Piredda,Diana Sarno,Gianpaolo Zampicinini,Adriana Zingone,Marina Montresor
Published in: Environmental DNA, 2022, ISSN 2637-4943
Publisher: John Wiley & Sons Ltd
DOI: 10.1002/edn3.288

Long term survival of cryopreserved mussel larvae (Mytilus galloprovinciallis)

Author(s): R. Rodriguez-Riveiro, P. Heres, J. Troncoso, E. Paredes
Published in: Aquaculture, 512, 2019, Page(s) 734326, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2019.734326

Amphioxus Sp5 is a member of a conserved Specificity Protein complement and is modulated by Wnt/beta-catenin signalling

Author(s): Simon C Dailey, Iryna Kozmikova, Ildikó M L Somorjai
Published in: Int J Dev Biol, 2017, ISSN 0214-6282
Publisher: University of the Basque Country Press
DOI: 10.1387/ijdb.170205is

Electric ultrafreezer (− 150 °C) as an alternative for zebrafish sperm cryopreservation and storage

Author(s): Patrícia Diogo, Gil Martins, Isa Quinzico, Rita Nogueira, Paulo J. Gavaia, Elsa Cabrita
Published in: Fish Physiology and Biochemistry, 44/6, 2018, Page(s) 1443-1455, ISSN 0920-1742
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s10695-018-0500-6

Global phylogeography of marine Synechococcus in coastal areas reveals strikingly different communities than in the open ocean

Author(s): Hugo Doré, Jade Leconte, Ulysse Guyet, Solène Breton, Gregory K. Farrant, David Demory, Morgane Ratin, Mark Hoebeke, Erwan Corre, Frances D. Pitt, Martin Ostrowski, David J. Scanlan, Frédéric Partensky, Christophe Six,Laurence Garczarek
Published in: bioRxiv, 2022, ISSN 2692-8205
Publisher: -
DOI: 10.1101/2022.03.07.483242

HES and Mox genes are expressed during early mesoderm formation in a mollusk with putative ancestral features

Author(s): Sachslehner, Attila; Zieger, Elisabeth; Calcino, Andrew; Wanninger, Andreas
Published in: Scientific Reports, Vol 11, Iss 1, Pp 1-14 (2021), 20452322, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-96711-y

A Marine Biodiversity Observation Network for Genetic Monitoring of Hard-Bottom Communities (ARMS-MBON)

Author(s): Matthias Obst, Katrina Exter, A. Louise Allcock, Christos Arvanitidis, Alizz Axberg, Maria Bustamante, Ibon Cancio, Diego Carreira-Flores, Eva Chatzinikolaou, Giorgos Chatzigeorgiou, Nathan Chrismas, Melody S. Clark, Thierry Comtet, Thanos Dailianis, Neil Davies, Klaas Deneudt, Oihane Diaz de Cerio, Ana Fortič, Vasilis Gerovasileiou, Pascal I. Hablützel, Kleoniki Keklikoglou, Georgios Kotoulas,
Published in: Frontiers in Marine Science, 7, 2020, ISSN 2296-7745
Publisher: Ocean Observation
DOI: 10.3389/fmars.2020.572680

The Diversity of Muscles and Their Regenerative Potential across Animals

Author(s): Letizia Zullo, Matteo Bozzo, Alon Daya, Alessio Di Clemente, Francesco Paolo Mancini, Aram Megighian, Nir Nesher, Eric Röttinger, Tal Shomrat, Stefano Tiozzo, Alberto Zullo, Simona Candiani
Published in: Cells, 9/9, 2020, Page(s) 1925, ISSN 2073-4409
Publisher: Cells
DOI: 10.3390/cells9091925

The genus Cystoseira s.l. (Ochrophyta, Fucales, Sargassaceae) in the Black Sea: morphological variability and molecular taxonomy of Gongolaria barbata and endemic Ericaria crinita f. bosphorica comb. nov.

Author(s): Sadogurska, Sofia S.; Neiva, João; Falace, Annalisa; Serrão, Ester A.; Israel, Álvaro
Published in: Repositório Científico de Acesso Aberto de Portugal, 11793155, 2021, ISSN 1179-3155
Publisher: Magnolia Press
DOI: 10.11646/phytotaxa.480.1.1

Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate

Author(s): Anthony Leon; Lucie Subirana; Kevin Magre; Ildefonso Cases; Juan J. Tena; Manuel Irimia; Jose Luis Gomez-Skarmeta; Hector Escriva; Stéphanie Bertrand
Published in: Crossref, 07374038, 2022, ISSN 0737-4038
Publisher: Oxford University Press
DOI: 10.1093/molbev/msac055

Identification to species level of live single microalgal cells from plankton samples with matrix-free laser/desorption ionization mass spectrometry

Author(s): Tim U. H. Baumeister, Marine Vallet, Filip Kaftan, Laure Guillou, Aleš Svatoš, Georg Pohnert
Published in: Metabolomics, 16/3, 2020, ISSN 1573-3882
Publisher: Springer Verlag
DOI: 10.1007/s11306-020-1646-7

m6A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms

Author(s): Ruocco, M.; Ambrosino, L.; Jahnke, M.; Chiusano, M.L.; Barrote, I.; Procaccini, G.; Silva, J.; Dattolo, E.
Published in: Int. J. Mol. Sci., 2020, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21207508

New records on the rich loriciferan fauna of Trezen ar Skoden (Roscoff, France): Description of two new species of Nanaloricus and the new genus Scutiloricus.

Author(s): Ricardo Cardoso Neves; Reinhardt Møbjerg Kristensen; Nadja Møbjerg
Published in: PLoS ONE, Vol 16, Iss 5, p e0250403 (2021), 19326203, 2021, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0250403

New Alien Mediterranean Biodiversity Records (October 2020)

Author(s): MICHAIL RAGKOUSIS, NARDJES ABDELALI, ERNESTO AZZURRO, ALI BADREDDINE, MICHAEL BARICHE, GHAZI BITAR, FABIO CROCETTA, FRANCESCO DENITTO, MARKOS DIGENIS, RADHOUAN EL ZRELLI, AYŞEGÜL ERGENLER, ANA FORTIČ, VASILIS GEROVASILEIOU, SAMIR GRIMES, STELIOS KATSANEVAKIS, CENGIZ KOÇAK, CATALDO LICCHELLI, EVGENIOS LOUDAROS, FRANCESCO MASTROTOTARO, BORUT MAVRIČ, SINAN MAVRUK, ANASTASIA MILIOU, FEDERICA MONT
Published in: Mediterranean Marine Science, 2020, ISSN 1108-393X
Publisher: National Centre for Marine Research
DOI: 10.12681/mms.23673

En masse DNA Electroporation for in vivo Transcriptional Assay in Ascidian Embryos

Author(s): Sébastien Darras
Published in: Bio Protoc, 2021, ISSN 2331-8325
Publisher: Bio-protocol LLC
DOI: 10.21769/bioprotoc.4160

Genomics-Metabolomics Profiling Disclosed Marine Vibrio spartinae 3.6 as a Producer of a New Branched Side Chain Prodigiosin.

Author(s): Giovanni Andrea Vitale; Martina Sciarretta; Fortunato Palma Esposito; Fortunato Palma Esposito; Grant Garren January; Marianna Giaccio; Boyke Bunk; Cathrin Spröer; Felizitas Bajerski; Deborah M. Power; Carmen Festa; Maria Chiara Monti; Maria Valeria D'Auria; Donatella de Pascale; Donatella de Pascale
Published in: reponame:Repositório Científico de Acesso Aberto de Portugal, 35, 2020, ISSN 0163-3864
Publisher: American Chemical Society
DOI: 10.1021/acs.jnatprod.9b01159

Honey Bee Pollen in Meagre (Argyrosomus regius) Juvenile Diets: Effects on Growth, Diet Digestibility, Intestinal Traits, and Biochemical Markers Related to Health and Stress

Author(s): Simona Manuguerra; Giovanni PICCOLO; Concetta Messina; Stavros Chatzifotis; Ike Olivotto
Published in: Animals, Vol 10, Iss 2, p 231 (2020), 3, 2020, ISSN 2076-2615
Publisher: Animals
DOI: 10.3390/ani10020231

Physiological Characteristics of Stylophora pistillata Larvae Across a Depth Gradient

Author(s): Federica Scucchia, Hagai Nativ, Maayan Neder, Gretchen Goodbody-Gringley, Tali Mass
Published in: Frontiers in Marine Science, 7, 2020, ISSN 2296-7745
Publisher: Coral reef research
DOI: 10.3389/fmars.2020.00013

Highly distinct genetic programs for peripheral nervous system formation in chordates

Author(s): Rafath Chowdhury, Agnès Roure, Yann le Pétillon, Hélène Mayeur, Vladimir Daric & Sébastien Darras
Published in: BMC Biology, 2022, ISSN 1741-7007
Publisher: BioMed Central
DOI: 10.1186/s12915-022-01355-7

Coronamoeba villafranca gen. nov. sp. nov. (Amoebozoa, Dermamoebida) challenges the correlation of morphology and phylogeny in Amoebozoa

Author(s): Alexander Kudryavtsev; Fyodor Voytinsky; Ekaterina Volkova
Published in: Crossref, 20452322, 2022, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-022-16721-2

Seasonal dynamics of marine protist communities in tidally mixed coastal waters

Author(s): Mariarita Caracciolo; Fabienne Rigaut‐Jalabert; Sarah Romac; Frédéric Mahé; Samuel Forsans; Jean‐Philippe Gac; Laure Arsenieff; Maxime Manno; Samuel Chaffron; Thierry Cariou; Mark Hoebeke; Yann Bozec; Eric Goberville; Florence Le Gall; Loïc Guilloux; Anne‐Claire Baudoux; Colomban de Vargas; Fabrice Not; Eric Thiébaut; Nicolas Henry; Nathalie Simon
Published in: Molecular Ecology, 1365294X, 2022, ISSN 1365-294X
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/mec.16539

Comparative study on cellular and molecular responses in oyster sperm revealed different susceptibilities to cryopreservation

Author(s): Marta F. Riesco, Francisca Félix, Domitilia Matias, Sandra Joaquim, Marc Suquet, Elsa Cabrita
Published in: Aquaculture, 498, 2019, Page(s) 223-229, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2018.08.049

Amphioxus regeneration: evolutionary and biomedical implications

Author(s): Ildikó M L Somorjai
Published in: Int J Dev Biol, 2017, ISSN 0214-6282
Publisher: University of the Basque Country Press
DOI: 10.1387/ijdb.170219is

Contributions of suboolemmal acidic vesicles and microvilli to the intracellular Ca 2+ increase in the sea urchin eggs at fertilization

Author(s): F Vasilev, N Limatola, JT Chun, L Santella
Published in: International Journal of Biological Sciences, 15/4, 2019, Page(s) 757-775, ISSN 1449-2288
Publisher: Ivyspring International Publisher
DOI: 10.7150/ijbs.28461

Ecdysis-related neuropeptide expression and metamorphosis in a non-ecdysozoan bilaterian

Author(s): Elisabeth Zieger, Andrew D. Calcino, Nicolas S.M. Robert, Christian Baranyi, Andreas Wanninger
Published in: Evolution, 00143820, 2021, ISSN 0014-3820
Publisher: Society for the Study of Evolution
DOI: 10.1111/evo.14308

Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity

Author(s): Angela Falciatore, Marianne Jaubert, Jean-Pierre Bouly, Benjamin Bailleul, Thomas Mock
Published in: The Plant Cell, 32/3, 2020, Page(s) 547-572, ISSN 1040-4651
Publisher: American Society of Plant Biologists
DOI: 10.1105/tpc.19.00158

Larval cryopreservation as new management tool for threatened clam fisheries.

Author(s): Pablo Heres; Jesús S. Troncoso; Estefania Paredes
Published in: instname:Universidade de Vigo (UVigo), 20452322, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-94197-2

Novel heterococcolithophores, holococcolithophores and life cycle combinations from the families Syracosphaeraceae and Pappohaeraceae and the genus Florisphdera

Author(s): Sabine Keuter, Jeremy R. Young, Gil Koplovitz, Adriana Zingone, Miguel J. Frada
Published in: J. Micropalaeontology, 2021, ISSN 0262-821X
Publisher: The British Micropalaeontological Society
DOI: 10.5194/jm-40-75-2021

Mitochondrial genome sequencing of marine leukemias reveals cancer contagion between clam species in the Seas of Southern Europe

Author(s): Daniel Garcia-Souto, Alicia L Bruzos, Seila Diaz, Sara Rocha, Ana Pequeño-Valtierra, Camila F Roman-Lewis, Juana Alonso, Rosana Rodriguez, Damian Costas, Jorge Rodriguez-Castro, Antonio Villanueva, Luis Silva, Jose Maria Valencia, Giovanni Annona, Andrea Tarallo, Fernando Ricardo, Ana Bratoš Cetinić, David Posada, Juan Jose Pasantes, Jose MC Tubio
Published in: eLife, 2050084X, 2022, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.1101/2021.03.10.434714

Does Warming Enhance the Effects of Eutrophication in the Seagrass Posidonia oceanica?

Author(s): Jessica Pazzaglia, Alex Santillán-Sarmiento, Stephanie B. Helber, Miriam Ruocco, Antonio Terlizzi, Lázaro Marín-Guirao, Gabriele Procaccini
Published in: Frontiers in Marine Science, 7, 2020, ISSN 2296-7745
Publisher: Global change and the future ocean
DOI: 10.3389/fmars.2020.564805

Molecular genetic differentiation of native populations of Mediterranean blue mussels, <i>Mytilus galloprovincialis</i> Lamarck, 1819, and the relationship with environmental variables

Author(s): R. Wenne; M. Zbawicka; A. Prądzińska; J. Kotta; K. Herkül; J. P. A. Gardner; A. P. Apostolidis; A. Poćwierz-Kotus; O. Rouane-Hacene; A. Korrida; F. Dondero; M. Baptista; S. Reizopoulou; B. Hamer; K. K. Sundsaasen; M. Árnyasi; M. P. Kent
Published in: The European Zoological Journal, 24750263, 2022, ISSN 2475-0263
Publisher: TAYLOR & FRANCIS LTD
DOI: 10.1080/24750263.2022.2086306

Major challenges in cryopreservation of sea urchin eggs

Author(s): S.Campos, J.Troncoso, E.Paredes
Published in: Cryobiology, 00112240, 2021, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2020.11.008

Density dependent grazing rates in a natural microzooplankton community

Author(s): D Calliari, L Rodríguez-Graña, P Tiselius
Published in: Marine Ecology Progress Series, 622, 2019, Page(s) 83-92, ISSN 0171-8630
Publisher: Inter-Research Science Publishing
DOI: 10.3354/meps13003

Comparing sediment preservation methods for genomic biomonitoring of coastal marine ecosystems.

Author(s): Verena Dully; Giulia Rech; Thomas A. Wilding; Anders Lanzén; Kate MacKichan; Iain Berrill; Thorsten Stoeck
Published in: Marine Pollution Bulletin, 0025326X, 2021, ISSN 0025-326X
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.marpolbul.2021.113129

Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas

Author(s): Ferrieux Mathilde, Dufour Louison, Doré Hugo, Ratin Morgane, Guéneuguès Audrey, Chasselin Léo, Marie Dominique, Rigaut-Jalabert Fabienne, Le Gall Florence, Sciandra Théo, Monier Garance, Hoebeke Mark, Corre Erwan, Xia Xiaomin, Liu Hongbin, Scanlan David J., Partensky Frédéric, Garczarek Laurence
Published in: Frontiers in Microbiology, 2022, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2022.893413

Remnants of ancestral larval eyes in an eyeless mollusk? Molecular characterization of photoreceptors in the scaphopod Antalis entalis

Author(s): Tim Wollesen, Carmel McDougall, Detlev Arendt
Published in: EvoDevo, 10/1, 2019, ISSN 2041-9139
Publisher: BioMed Central
DOI: 10.1186/s13227-019-0140-7

The Fox gene repertoire in the annelid Owenia fusiformis reveals multiple expansions of the foxQ2 class in Spiralia

Author(s): Océane Seudre, Francisco M Martín-Zamora, Valentina Rapisarda, Imran Luqman, Allan M Carrillo-Baltodano, José M Martín-Durán
Published in: Genome Biology and Evolution, 2022, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evac139

Underpinning the Development of Seaweed Biotechnology: Cryopreservation of Brown Algae ( Saccharina latissima ) Gametophytes

Author(s): Wouter Visch, Cecilia Rad-Menéndez, Göran M. Nylund, Henrik Pavia, Matthew J. Ryan, John Day
Published in: Biopreservation and Biobanking, 17/5, 2019, Page(s) 378-386, ISSN 1947-5535
Publisher: Mary Ann Liebert Inc.
DOI: 10.1089/bio.2018.0147

Phenotypic plasticity under rapid global changes: The intrinsic force for future seagrasses survival

Author(s): Jessica Pazzaglia, Thorsten B. H. Reusch, Antonio Terlizzi, Lázaro Marín-Guirao, Gabriele Procaccini
Published in: Evolutionary Applications, 17524571, 2021, ISSN 1752-4571
Publisher: John Wiley & Sons Ltd
DOI: 10.1111/eva.13212

Efficient, fast and inexpensive bioassay to monitor benthic microalgae toxicity: Application to Ostreopsis species.

Author(s): Anne-Sophie Pavaux; Eva Ternon; Louison Dufour; Sophie Marro; Marin-Pierre Gémin; Olivier P. Thomas; Rodolphe Lemée
Published in: Aquatic Toxicology (0166-445X) (Elsevier BV), 2020-06 , Vol. 223 , P. 105485 (12p.), 0166445X, 2020, ISSN 0166-445X
Publisher: Elsevier BV
DOI: 10.1016/j.aquatox.2020.105485

New Alien Mediterranean Biodiversity Records (March 2020)

Author(s): BARICHE, M., AL-MABRUK, S. A., ATEŞ, M. A., BÜYÜK, A., CROCETTA, F., DRITSAS, M., EDDE, D., FORTIČ, A., GAVRIIL, E., GEROVASILEIOU, V., GÖKOĞLU, M., HUSEYINOGLU, F. M., KARACHLE, P. K., KLEITOU, P., TERBIYIK KURT, T., LANGENECK, J., LARDICCI, C., LIPEJ, L., PAVLOUDI, C., PINNA, M., RIZGALLA, J., RÜŞTÜ ÖZEN, M., SEDANO, F., TAŞKIN, E., YILDIZ, G., & ZANGARO, F.
Published in: Mediterranean Marine Science, 2020, ISSN 1108-393X
Publisher: National Centre for Marine Research
DOI: 10.12681/mms.21987

Fatty acids in microalgae and cyanobacteria in a changing world: Contrasting temperate and cold environments

Author(s): MARCELO P. HERNANDO, IRENE R. SCHLOSS, FLORENCIA DE LA ROSA, MARLEEN DE TROCH
Published in: BIOCELL, 2022, ISSN 0327-9545
Publisher: Centro Regional de Investigaciones Cientificas y Tecnologicas
DOI: 10.32604/biocell.2022.017309

Cryopreservation of mussel trochophore larvae and long-term effects: from larval rearing to settlement.

Author(s): R. Rodríguez-Riveiro, P. Heres, E. Paredes
Published in: Cryobiology, 85, 2018, Page(s) 173-174, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2018.10.206

Effects of the toxic dinoflagellate Ostreopsis cf. ovata on survival, feeding and reproduction of a phytal harpacticoid copepod

Author(s): Pavaux Anne-Sophie, Rostan Julie, Guidi-Guilvard Laurence, Marro Sophie, Ternon Eva, Olivier P. Thomas, Lemée Rodolphe, Gasparini Stéphane
Published in: Journal of Experimental Marine Biology and Ecology, 516, 2019, Page(s) 103-113, ISSN 0022-0981
Publisher: Elsevier BV
DOI: 10.1016/j.jembe.2019.05.004

The Use of Cryopreserved Biological Material for Water Quality Assessment

Author(s): Estefania Paredes, Juan Bellas
Published in: Frontiers in Marine Science, 6, 2019, ISSN 2296-7745
Publisher: Marine Pollution
DOI: 10.3389/fmars.2019.00454

Gene Editing in the Ascidian Phallusia mammillata and Tail Nerve Cord Formation

Author(s): Alex McDougall, Celine Hebras, Isa Gomes, Remi Dumollard
Published in: Developmental Biology of the Sea Urchin and Other Marine Invertebrates, 2020, ISSN 1064-3745
Publisher: Humana Press, Inc.
DOI: 10.1007/978-1-0716-0974-3_13

Roll, right, repeat: short-term repeatability in the self-righting behaviour of a cold-water sea cucumber

Author(s): Jeff C. Clements, Ellen Schagerström, Sam Dupont, Fredrik Jutfelt, Kirti Ramesh
Published in: Journal of the Marine Biological Association of the United Kingdom, 100/1, 2020, Page(s) 115-120, ISSN 0025-3154
Publisher: Cambridge University Press
DOI: 10.1017/s0025315419001218

Functions of the FGF signalling pathway in cephalochordates provide insight into the evolution of the prechordal plate

Author(s): Lydvina Meister, Hector Escriva, Stéphanie Bertrand
Published in: Development, 2022, ISSN 0950-1991
Publisher: The Company of Biologists Ltd.
DOI: 10.1242/dev.200252

Ingested microscopic plastics translocate from the gut cavity of juveniles of the ascidian Ciona intestinalis

Author(s): S. Messinetti, S. Mercurio, G. Scarì, A. Pennati, R. Pennati
Published in: The European Zoological Journal, 86/1, 2019, Page(s) 189-195, ISSN 2475-0263
Publisher: The European Zoological Journal
DOI: 10.1080/24750263.2019.1616837

New insights on Laminaria digitata ultrastructure through combined conventional chemical fixation and cryofixation

Author(s): Christos Katsaros , Sophie Le Panse , Gillian Milne , Carl J. Carrano, Frithjof Christian Küpper
Published in: Botanica Marina, 00068055, 2021, ISSN 0006-8055
Publisher: Walter de Gruyter GmbH & Co. KG
DOI: 10.1515/bot-2021-0005

Toxicity tests of cryoprotecting agents for Mytilus galloprovincialis (Lamark, 1819) early developmental stages

Author(s): P. Heres, R. Rodriguez-Riveiro, J. Troncoso, E. Paredes
Published in: Cryobiology, 86, 2019, Page(s) 40-46, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2019.01.001

Metabarcoding on planktonic larval stages: an efficient approach for detecting and investigating life cycle dynamics of benthic aliens

Author(s): Marjorie Couton, Thierry Comtet, Sabrina Le Cam, Erwan Corre, Frédérique Viard
Published in: Management of Biological Invasions, 10/4, 2019, Page(s) 657-689, ISSN 1989-8649
Publisher: International Journal of Applied Research on Biological Invasions
DOI: 10.3391/mbi.2019.10.4.06

The small polychaete Platynereis dumerilii revealed as a large species complex with fourteen MOTUs in European marine

Author(s): Marcos A. L. Teixeira, Arne Nygren, Ascensão Ravara, Pedro E. Vieira, José Carlos Hernández, Filipe O. Costa
Published in: 2021
Publisher: ARPHA Conference Abstracts
DOI: 10.3897/aca.4.e64937

Not all that looks like a Tubulinean is a Tubulinean: expectations and reality for the parasitic amoeba Janickina pigmentifera (Grassi, 1881)

Author(s): Ekaterina Volkova, Alexander Kudryavtsev
Published in: 39th annual meeting of the German Society for Protozoology, 2020
Publisher: University of Kaiserslautern

Expresión génica diferencial asociada a la tasa de crecimiento en las branquias y la glándula digestiva de la almeja fina (Ruditapes decussatus)

Author(s): Saavedra, Carlos Felipe; Milan, Massimo; Leite, Ricardo B.; Cordero, David
Published in: Consejo Superior de Investigaciones Científicas (CSIC), 2017
Publisher: XVI Congreso Nacional de Acuicultura

Cryopreservation of Blue mussel (Mytilus galloprovincialis) trochophore larvae and larval rearing development

Author(s): Rodriguez-Riveiro, R.; Heres, P.; Paredes, E.
Published in: 2018
Publisher: Universidade de Vigo

https://pureportal.spbu.ru/ru/publications/phylogeny-cryptic-diversity-and-benefits-of-investigating-marine-

Author(s): Kudryavtsev, A.; Volkova, E.; Voytinsky, F.
Published in: 39th Annual Meeting of the German Society for Protozoology, 2020
Publisher: University of Kaiserslautern

Artificial Reef Monitoring Structures (ARMS) providing insights on hard substrate biodiversity and community structure of the Eastern Mediterranean Sea

Author(s): Christina Pavloudi, Eleni Ioanna Yperifanou, Jon Bent Kristoffersen, Thanos Dailianis, Vasilis Gerovasileiou
Published in: 26033925, 2021, ISSN 2603-3925
Publisher: ARPHA Conference Abstracts
DOI: 10.3897/aca.4.e64760

Characterization of eyes, photoreceptors and opsins in developmental stages of the chaetognath Spadella cephaloptera

Author(s): Wollesen, Tim; Rodríguez Monje, Sonia Victoria; Oel, Adam Phillip; Arendt, Detlev
Published in: biorxiv, 2020
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/871111

Molecular phylogeny of historical micro-invertebrate specimens using de novo sequence assembly

Author(s): R.J.S Orr; M. M. Sannum; S. Boessenkool; E. Di Martino; D.P. Gordon; H. Mello; M. Obst; M.H. Ramsfjell; A.M. Smith; L.H. Liow
Published in: biorxiv, 2020
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2020.03.30.015669

The influence of bait on remote underwater video observations in shallow-water coastal environments associated with the North-Eastern Atlantic

Author(s): Robyn E. Jones, Ross A. Griffin, Stephanie R. Januchowski-Hartley, Richard K.F. Unsworth
Published in: PeerJ, 8, 2020, Page(s) e9744, ISSN 2167-8359
Publisher: PeerJ
DOI: 10.7717/peerj.9744

Cryoprotectants synergy improve zebrafish sperm cryopreservation and offspring skeletogenesis.

Author(s): Paulo Gavaia; Ana Marreiros
Published in: Cryobiology, 1, 2019, ISSN 0011-2240
Publisher: Academic Press
DOI: 10.1016/j.cryobiol.2019.10.001

Conserved meiotic mechanisms in the cnidarian Clytia hemisphaerica revealed by Spo11 knockout

Author(s): Catriona Munro, Hugo Cadis, Sophie Pagnotta,Evelyn Houliston,Jean-René Huynh
Published in: biorRxiv, 2022, ISSN 2692-8205
Publisher: -
DOI: 10.1101/2022.01.05.475076

Macroalgal forests ecology, long-term monitoring, and conservation in a Mediterranean Marine Protected Area

Author(s): Alba Medrano Cuevas
Published in: 2019
Publisher: Universitat de Barcelona

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