Fast Assay for Pathogen Identification and Characterisation

Livrables

Clinical advice on relevant targets, samples, patient populations

Clinical advice on relevant targets, samples, patient populations.

Analysis of bacteremia pilot study teport

Analysis of bacteremia pilot study report.

Project handbook

Project handbook.

Sample collection B

Sample collection from known positive environmental samples and prescreen using method.

Randomized and blinded panels

Preparation of randomised and blinded panels for analysis of two extraction methods.

Publications

Extended-spectrum beta-lactamases and plasmid diversity in urinary isolates of Escherichia coli in Croatia: a nation-wide, multicentric, retrospective study

Auteurs: Marija Krilanović, Maja Tomić-Paradžik, Tomislav Meštrović, Nataša Beader, Zoran Herljević, Rick Conzemius, Ivan Barišić, Jasmina Vraneš, Vesna Elveđi-Gašparović, Branka Bedenić
Publié dans: Folia Microbiologica, Numéro 65/4, 2020, Page(s) 649-667, ISSN 0015-5632
Éditeur: Academy of Sciences of the Czech Republic
DOI: 10.1007/s12223-019-00769-1

Epidemiology of colistin-resistant, carbapenemase-producing Enterobacteriaceae and Acinetobacter baumannii in Croatia

Auteurs: Valentino D’Onofrio, Rick Conzemius, Dijana Varda-Brkić, Maja Bogdan, Andrea Grisold, Inge C. Gyssens, Branka Bedenić, Ivan Barišić
Publié dans: Infection, Genetics and Evolution, Numéro 81, 2020, Page(s) 104263, ISSN 1567-1348
Éditeur: Elsevier BV
DOI: 10.1016/j.meegid.2020.104263

Audit of empirical antibiotic therapy for sepsis and the effect of multidisciplinary consultation on early antibiotic therapy changes and patient outcomes

Auteurs: Valentino D’Onofrio, Agnes Meersman, Koen Magerman, Luc Waumans, Karlijn Van Halem, Jeroen Van der Hilst, Reinoud Cartuyvels, Peter Messiaen, Inge C Gyssens
Publié dans: International Journal of Antimicrobial Agents, Numéro Submitted, 2021, Page(s) Submitted, ISSN 0000-0000
Éditeur: Elsevier

In-silico Design of DNA Oligonucleotides: Challenges and Approaches

Auteurs: Ivan Barisic
Publié dans: Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 1056-1065 (2019), Numéro 1, 2019, Page(s) 1056-1065, ISSN 2001-0370
Éditeur: Elsevier BV
DOI: 10.1016/j.csbj.2019.07.008

The Clinical Impact of Rapid Molecular Microbiological Diagnostics for Pathogen and Resistance Gene Identification in Patients With Sepsis: A Systematic Review

Auteurs: Valentino D’Onofrio, Lene Salimans, Branka Bedenić, Reinoud Cartuyvels, Ivan Barišić, Inge C Gyssens
Publié dans: Open Forum Infectious Diseases, Numéro 7/10, 2020, ISSN 2328-8957
Éditeur: Open Forum Infectious Diseases
DOI: 10.1093/ofid/ofaa352

Risk factors for mortality, ICU admission and bacteremia in patients suspected of sepsis at the Emergency department. A prospective cohort study

Auteurs: Valentino D’Onofrio, Agnes Meersman, Sara Vijgen, Reinoud Cartuyvels, Peter Messiaen, Inge C Gyssens
Publié dans: Open Forum Infectious Diseases, 2020, ISSN 2328-8957
Éditeur: Oxford academic
DOI: 10.1093/ofid/ofaa594

PRIMEval: Optimization and screening of multiplex oligonucleotide assays

Auteurs: Rick Conzemius, Michaela Hendling, Stephan Pabinger, Ivan Barišić
Publié dans: Scientific Reports, Numéro 9/1, 2019, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-019-55883-4

Gram-negative bacteria as causative agents of ventilator-associated pneumonia and their respective resistance mechanisms

Auteurs: Daniela Bandić-Pavlović, Tajana Zah-Bogović, Marta Žižek, Luka Bielen, Vesna Bratić, Pero Hrabač, Domagoj Slačanac, Slobodan Mihaljević, Branka Bedenić
Publié dans: Journal of Chemotherapy, Numéro 32/7, 2020, Page(s) 344-358, ISSN 1120-009X
Éditeur: Maney Publishing
DOI: 10.1080/1120009x.2020.1793594

Emergence of multidrug-resistant Proteus mirabilis in a long-term care facility in Croatia

Auteurs: Branka Bedenić, Nataša Firis, Vesna Elveđi-Gašparović, Marija Krilanović, Krešimir Matanović, Iva Štimac, Josefa Luxner, Jasmina Vraneš, Tomislav Meštrović, Gernot Zarfel, Andrea Grisold
Publié dans: Wiener klinische Wochenschrift, Numéro 128/11-12, 2016, Page(s) 404-413, ISSN 0043-5325
Éditeur: Springer Verlag
DOI: 10.1007/s00508-016-1005-x

Molecular characterization of class b carbapenemases in advanced stage of dissemination and emergence of class d carbapenemases in Enterobacteriaceae from Croatia

Auteurs: Branka Bedenić, Sanda Sardelić, Josefa Luxner, Zrinka Bošnjak, Dijana Varda-Brkić, Amarela Lukić-Grlić, Ivana Mareković, Sonja Frančula-Zaninović, Marija Krilanović, Dorotea Šijak, Andrea Grisold, Gernot Zarfel
Publié dans: Infection, Genetics and Evolution, Numéro 43, 2016, Page(s) 74-82, ISSN 1567-1348
Éditeur: Elsevier BV
DOI: 10.1016/j.meegid.2016.05.011

Oli2go: an automated multiplex oligonucleotide design tool

Auteurs: Michaela Hendling, Stephan Pabinger, Konrad Peters, Noa Wolff, Rick Conzemius, Ivan Barišić
Publié dans: Nucleic Acids Research, Numéro 46/W1, 2018, Page(s) W252-W256, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gky319

Arrival of carbapenem-hydrolyzing-oxacillinases in Acinetobacter baumannii in Bosnia and Herzegovina

Auteurs: Tanja Petrović, Selma Uzunović, Ivan Barišić, Josefa Luxner, Andrea Grisold, Gernot Zarfel, Amir Ibrahimagić, Sanja Jakovac, Domagoj Slaćanac, Branka Bedenić
Publié dans: Infection, Genetics and Evolution, Numéro 58, 2018, Page(s) 192-198, ISSN 1567-1348
Éditeur: Elsevier BV
DOI: 10.1016/j.meegid.2017.12.021

Epidemic spread of OXA-48 beta-lactamase in Croatia

Auteurs: Branka Bedenić, Mia Slade, Lidija Žele Starčević, Sanda Sardelić, Mirna Vranić-Ladavac, Ana Benčić, Vlasta Zujić Atalić, Maja Bogdan, Marina Bubonja-Šonje, Maja Tomić-Paradžik, Tatjana Tot, Amarela Lukić-Grlić, Domagoj Drenjančević, Dijana Varda-Brkić, Daniela Bandić-Pavlović, Slobodan Mihaljević, Gernot Zarfel, Marija Gužvinec, Rick Conzemius, Ivan Barišić, Arjana Tambić-
Publié dans: Journal of Medical Microbiology, Numéro 67/8, 2018, Page(s) 1031-1041, ISSN 0022-2615
Éditeur: Society for General Microbiology
DOI: 10.1099/jmm.0.000777

Boron Doped Diamond as a Low Biofouling Material in Aquatic Environments: Assessment of Pseudomonas aeruginosa Biofilm Formation

Auteurs: Lee J. Simcox, Rui P. A. Pereira, Elizabeth M. H. Wellington, Julie V. Macpherson
Publié dans: ACS Applied Materials & Interfaces, Numéro 11/28, 2019, Page(s) 25024-25033, ISSN 1944-8244
Éditeur: American Chemical Society
DOI: 10.1021/acsami.9b07245

Differentiating influenza from COVID-19 in patients presenting with suspected sepsis

Auteurs: Valentino D’Onofrio, Eveline Van Steenkiste, Agnes Meersman, Luc Waumans, Reinoud Cartuyvels, Karlijn Van Halem, Peter Messiaen, Inge C. Gyssens
Publié dans: European Journal of Clinical Microbiology & Infectious Diseases, 2020, ISSN 0934-9723
Éditeur: Springer Verlag
DOI: 10.1007/s10096-020-04109-x

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