Deliverables Websites, patent fillings, videos etc. (1) Network website online WP6 Task 6.1 website Other (3) Network logo designed WP6 Task 6.1 logo Network information flyer complete WP6 Task 6.1 flyer Strasbourg Summer School WP5 Task 5.2, event 3 Publications Other (5) Proximal termination generates a transcriptional state that determines the rate of establishment of Polycomb silencing Author(s): Govind Menon, Eduardo Mateo Bonmati, Svenja Reeck, Robert Maple, Zhe Wu, Robert Ietswaart, Caroline Dean, Martin Howard Published in: BioRxiv, 2023 Publisher: Cold Spring Harbor Laboratories (CSHL) DOI: 10.1101/2023.07.06.547969 Comparison of the Hi-C, GAM and SPRITE methods by use of polymer models of chromatin Author(s): Francesco Musella; Ana Pombo; Rieke Kempfer; Antonella Prisco; Andrea Esposito; Andrea M. Chiariello; Luca Fiorillo; Mattia Conte; Mario Nicodemi; Ibai Irastorza-Azcarate; Simona Bianco; Alexander Kukalev Published in: Issue 1, 2020 Publisher: bioRxiv DOI: 10.1101/2020.04.24.059915 GATA transcription factors drive initial Xist upregulation after fertilization through direct activation of a distal enhancer element Author(s): Liat Ravid Lustig, Abhishek Sampath Kumar, Till Schwämmle, Ilona Dunkel, Gemma Noviello, Raha Weigert, Guido Pacini, Rene Buschow, Afrah Ghauri, Maximilian Stoetzel, Lars Wittler, Alexander Meissner, Edda G Schulz Published in: BioRxiv, 2022 Publisher: Cold Spring Harbor Laboratories (CSHL) DOI: 10.1101/2022.08.02.502458 Chromatin organization drives the exploration strategy of nuclear factors Author(s): Matteo Mazzocca, Alessia Loffreda, Emanuele Colombo, Tom Fillot, Daniela Gnani, Paola Falletta, Emanuele Monteleone, Serena Capozi, Edouard Bertrand, Gaelle Legube, Zeno Lavagnino, Carlo Tacchetti, Davide Mazza Published in: BioRxiv, 2022 Publisher: Cold Spring Harbor Laboratories (CSHL) DOI: 10.1101/2022.12.29.522193 Transcriptional changes are regulated by metabolic pathway dynamics but decoupled from protein levels Author(s): Jack E. Feltham, Shidong Xi, Struan C. Murray, Meredith Wouters, Julian Urdiain-Arraiza, Raphael Heilig, Charlotte George, Anna F. Townley, Emile Roberts, Benedikt M. Kessler, Sabrina Liberatori, Philip D. Charles, Andrew Angel, Roman Fischer, Published in: BioRxiv, 2020 Publisher: Cold Spring Harbor Laboratory (CSHL) DOI: 10.1101/833921 Peer reviewed articles (12) Hybrid protein assembly-histone modification mechanism for PRC2-based epigenetic switching and memory Author(s): Cecilia Lovkvist, Pawel Mikulski, Svenja Reeck, Matthew Hartley, Caroline Dean, Martin Howard Published in: eLife, 2021, ISSN 2050-084X Publisher: eLife Sciences Publications DOI: 10.7554/elife.66454 Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation Author(s): Mattia Conte, Luca Fiorillo, Simona Bianco, Andrea M. Chiariello, Andrea Esposito, Mario Nicodemi Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-020-17141-4 Establishment of heterochromatin in domain-size-dependent bursts Author(s): Jan Fabio Nickels, Ashleigh Katrine Edwards, Sebastian Jespersen Charlton, Amanda Møller Mortensen, Sif Christine Lykke Hougaard, Ala Trusina, Kim Sneppen, Geneviève Thon Published in: Proceedings of the National Academy of Sciences, Issue 118/15, 2021, Page(s) e2022887118, ISSN 0027-8424 Publisher: National Academy of Sciences DOI: 10.1073/pnas.2022887118 CasTuner is a degron and CRISPR/Cas-based toolkit for analog tuning of endogenous gene expression Author(s): Gemma Noviello, Rutger AF Gjaltema, Edda G Schulz Published in: Nature Communications, 2023, ISSN 2041-1723 Publisher: Nature Publishing Group Cohesin and CTCF control the dynamics of chromosome folding Author(s): Pia Mach, Pavel I. Kos, Yinxiu Zhan, Julie Cramard, Simon Gaudin, Jana Tünnermann, Edoardo Marchi, Jan Eglinger, Jessica Zuin, Mariya Kryzhanovska, Sebastien Smallwood, Laurent Gelman, Gregory Roth, Elphège P. Nora, Guido Tiana & Luca Giorgetti Published in: Nature Genetics, Issue 54, 2022, ISSN 1061-4036 Publisher: Nature Publishing Group DOI: 10.1038/s41588-022-01232-7 The Trithorax group protein ASH1 requires a combination of BAH domain and AT hooks, but not the SET domain, for mitotic chromatin binding and survival Author(s): Philipp A. Steffen; Christina Altmutter; Eva Dworschak; Sini Junttila; Attila Gyenesei; Xinzhou Zhu; Tobias Kockmann; Leonie Ringrose Published in: Chromosoma, Issue 1, 2021, ISSN 0009-5915 Publisher: Springer Verlag DOI: 10.3929/ethz-b-000500204 Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding Author(s): Mattia Conte, Ehsan Irani, Andrea M. Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito & Mario Nicodemi Published in: Nature Communications, Issue 13, 4070, 2022, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-022-31856-6 The needle and the haystack: single molecule tracking to probe the transcription factor search in eukaryotes Author(s): Matteo Mazzocca, Tom Fillot, Alessia Loffreda, Daniela Gnani, Davide Mazza Published in: Biochemical Society Transactions, 2021, ISSN 0300-5127 Publisher: Portland Press, Ltd. DOI: 10.1042/bst20200709 Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent Author(s): Kim Sneppen, Leonie Ringrose Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-019-10130-2 MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts Author(s): Andrea Hita, Gilles Brocart, Ana Fernandez, Marc Rehmsmeier, Anna Alemany and Sol Schvartzman Published in: BMC Bioinformatics, 2022, ISSN 1471-2105 Publisher: BioMed Central DOI: 10.1186/s12859-021-04544-3 The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin Author(s): Nickels, J. F., Della-Rosa, M. E., Goyeneche, I. M., Charlton, S. J., Sneppen, K., & Thon, G. Published in: Cell Reports, Issue 39(7), 110828, 2022, ISSN 2211-1247 Publisher: Cell Press DOI: 10.1016/j.celrep.2022.110828 Integrating analog and digital modes of gene expression at Arabidopsis FLC Author(s): Rea L. Antoniou-Kourounioti, Anis Meschichi, Svenja Reeck, Scott Berry, Govind Menon, Yusheng Zhao, John A. Fozard, Terri L. Holmes, Huamei Wang, Matthew Hartley, Caroline Dean, Stefanie Rosa, Martin Howard Published in: eLife, Issue 12, e79743, 2023, ISSN 2050-084X Publisher: eLife Sciences Publications DOI: 10.1101/2022.07.04.498694 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
