Deliverables
Report on whether additional statistically weak PREs in the fly could be identified (UBER), Presentation of TF mitotic bookmarking in an international conference (CERBM).
Presentation of WP3 results at meetingsESR13 Poster on Technology development for single-cell small non-coding RNA-seq analysis (DIAGENODE), ESR14 Poster on Novel computational tools to quantify NGS data for total RNA-seq (DIAGENODE)
Manuscripts describing WP1 resultsPaper that describes, validates and explores the Polycomb memory model (UCPH), Manuscript of PcG/TrxG residence times in live Drosophila chromatin (UBER), Manuscript describing and validating FLC transcriptional dynamics model (JIC), Manuscript on antisense-mediated bistable switch in X-chromosome inactivation (MPG)
Manuscripts describing WP2 resultsA review article based on the introduction to the thesis (OSR), Manuscript on TF mitotic bookmarking (CERBM), Manuscript of high-throughput reporter assay for predicted mammalian PREs (UBER), Manuscript on Polycomb targeting in flies (UBER).
Final ConferenceWP5 Task 5.2, event 6
Manuscripts describing WP3 resultsArticle on chromatin architecture of selected specific loci and genome-wide (NAPOLI), Article comparing chromatin contact between ES and mouse embryos (MDC), ESR 11 Review article based on the introduction to the thesis (UOXF), ESR 15 Review article based on the introduction to the thesis (UOXF).
Network logo designedWP6 Task 6.1 logo
Presentation of WP1 results at meetingsPresentation on 3D single cell chromosome organisation (FMI), Poster of Polycomb cellular memory model (UCPH), Presentation describing a model for FLC transcriptional dynamics (JIC)
Network information flyer completeWP6 Task 6.1 flyer
Strasbourg Summer SchoolWP5 Task 5.2, event 3
WP6 Task 6.1 website
Publications
Author(s):
Govind Menon, Eduardo Mateo Bonmati, Svenja Reeck, Robert Maple, Zhe Wu, Robert Ietswaart, Caroline Dean, Martin Howard
Published in:
BioRxiv, 2023
Publisher:
Cold Spring Harbor Laboratories (CSHL)
DOI:
10.1101/2023.07.06.547969
Author(s):
Francesco Musella; Ana Pombo; Rieke Kempfer; Antonella Prisco; Andrea Esposito; Andrea M. Chiariello; Luca Fiorillo; Mattia Conte; Mario Nicodemi; Ibai Irastorza-Azcarate; Simona Bianco; Alexander Kukalev
Published in:
Issue 1, 2020
Publisher:
bioRxiv
DOI:
10.1101/2020.04.24.059915
Author(s):
Liat Ravid Lustig, Abhishek Sampath Kumar, Till Schwämmle, Ilona Dunkel, Gemma Noviello, Raha Weigert, Guido Pacini, Rene Buschow, Afrah Ghauri, Maximilian Stoetzel, Lars Wittler, Alexander Meissner, Edda G Schulz
Published in:
BioRxiv, 2022
Publisher:
Cold Spring Harbor Laboratories (CSHL)
DOI:
10.1101/2022.08.02.502458
Author(s):
Matteo Mazzocca, Alessia Loffreda, Emanuele Colombo, Tom Fillot, Daniela Gnani, Paola Falletta, Emanuele Monteleone, Serena Capozi, Edouard Bertrand, Gaelle Legube, Zeno Lavagnino, Carlo Tacchetti, Davide Mazza
Published in:
BioRxiv, 2022
Publisher:
Cold Spring Harbor Laboratories (CSHL)
DOI:
10.1101/2022.12.29.522193
Author(s):
Jack E. Feltham, Shidong Xi, Struan C. Murray, Meredith Wouters, Julian Urdiain-Arraiza, Raphael Heilig, Charlotte George, Anna F. Townley, Emile Roberts, Benedikt M. Kessler, Sabrina Liberatori, Philip D. Charles, Andrew Angel, Roman Fischer,
Published in:
BioRxiv, 2020
Publisher:
Cold Spring Harbor Laboratory (CSHL)
DOI:
10.1101/833921
Author(s):
Cecilia Lovkvist, Pawel Mikulski, Svenja Reeck, Matthew Hartley, Caroline Dean, Martin Howard
Published in:
eLife, 2021, ISSN 2050-084X
Publisher:
eLife Sciences Publications
DOI:
10.7554/elife.66454
Author(s):
Mattia Conte, Luca Fiorillo, Simona Bianco, Andrea M. Chiariello, Andrea Esposito, Mario Nicodemi
Published in:
Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-020-17141-4
Author(s):
Jan Fabio Nickels, Ashleigh Katrine Edwards, Sebastian Jespersen Charlton, Amanda Møller Mortensen, Sif Christine Lykke Hougaard, Ala Trusina, Kim Sneppen, Geneviève Thon
Published in:
Proceedings of the National Academy of Sciences, Issue 118/15, 2021, Page(s) e2022887118, ISSN 0027-8424
Publisher:
National Academy of Sciences
DOI:
10.1073/pnas.2022887118
Author(s):
Gemma Noviello, Rutger AF Gjaltema, Edda G Schulz
Published in:
Nature Communications, 2023, ISSN 2041-1723
Publisher:
Nature Publishing Group
Author(s):
Pia Mach, Pavel I. Kos, Yinxiu Zhan, Julie Cramard, Simon Gaudin, Jana Tünnermann, Edoardo Marchi, Jan Eglinger, Jessica Zuin, Mariya Kryzhanovska, Sebastien Smallwood, Laurent Gelman, Gregory Roth, Elphège P. Nora, Guido Tiana & Luca Giorgetti
Published in:
Nature Genetics, Issue 54, 2022, ISSN 1061-4036
Publisher:
Nature Publishing Group
DOI:
10.1038/s41588-022-01232-7
Author(s):
Philipp A. Steffen; Christina Altmutter; Eva Dworschak; Sini Junttila; Attila Gyenesei; Xinzhou Zhu; Tobias Kockmann; Leonie Ringrose
Published in:
Chromosoma, Issue 1, 2021, ISSN 0009-5915
Publisher:
Springer Verlag
DOI:
10.3929/ethz-b-000500204
Author(s):
Mattia Conte, Ehsan Irani, Andrea M. Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito & Mario Nicodemi
Published in:
Nature Communications, Issue 13, 4070, 2022, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-022-31856-6
Author(s):
Matteo Mazzocca, Tom Fillot, Alessia Loffreda, Daniela Gnani, Davide Mazza
Published in:
Biochemical Society Transactions, 2021, ISSN 0300-5127
Publisher:
Portland Press, Ltd.
DOI:
10.1042/bst20200709
Author(s):
Kim Sneppen, Leonie Ringrose
Published in:
Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-019-10130-2
Author(s):
Andrea Hita, Gilles Brocart, Ana Fernandez, Marc Rehmsmeier, Anna Alemany and Sol Schvartzman
Published in:
BMC Bioinformatics, 2022, ISSN 1471-2105
Publisher:
BioMed Central
DOI:
10.1186/s12859-021-04544-3
Author(s):
Nickels, J. F., Della-Rosa, M. E., Goyeneche, I. M., Charlton, S. J., Sneppen, K., & Thon, G.
Published in:
Cell Reports, Issue 39(7), 110828, 2022, ISSN 2211-1247
Publisher:
Cell Press
DOI:
10.1016/j.celrep.2022.110828
Author(s):
Rea L. Antoniou-Kourounioti, Anis Meschichi, Svenja Reeck, Scott Berry, Govind Menon, Yusheng Zhao, John A. Fozard, Terri L. Holmes, Huamei Wang, Matthew Hartley, Caroline Dean, Stefanie Rosa, Martin Howard
Published in:
eLife, Issue 12, e79743, 2023, ISSN 2050-084X
Publisher:
eLife Sciences Publications
DOI:
10.1101/2022.07.04.498694
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