AQUAculture infrastructures for EXCELlence in EUropean fish research 3.0

Deliverables

Survey of TNA users hosts reviewers and SP Members

TNA Application Package including online application & review system

Full set of materials to promote TNA provide guidance on the RIs and means of access terms and conditions and expected outputs

TNA Monitoring & Reporting online System

ARIAbased system including a repository for project documents and publications

Standardized protocol for real-time microbiome monitoring in fish experimental facilities

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Publications

Isolation and Characterization of Highly Pure Type A Spermatogonia From Sterlet (Acipenser ruthenus) Using Flow-Cytometric Cell Sorting

Author(s): Xuan Xie, Tomáš Tichopád, Galina Kislik, Lucie Langerová, Pavel Abaffy, Radek Šindelka, Roman Franěk, Michaela Fučíková, Christoph Steinbach, Mujahid Ali Shah, Ivo Šauman, Fan Chen and Martin Pšenička
Published in: Frontiers in Cell and Developmental Biology, 2021, ISSN 2296-634X
Publisher: Frontiers Media
DOI: 10.3389/fcell.2021.772625

Production of common carp donor-derived offspring from goldfish surrogate broodstock

Author(s): Roman Franěk, Vojtěch Kašpar, Mujahid Ali Shah, David Gela, Martin Pšenička
Published in: Aquaculture, Issue 534, 15 March 2021, 736252, 2021, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2020.736252

Understanding how high stocking densities and concurrent limited oxygen availability drive social cohesion and adaptive features in regulatory growth, antioxidant defense and lipid metabolism in farmed gilthead sea bream (Sparus aurata)

Author(s): Holhorea PG, Naya-Català F, Belenguer Á, Calduch-Giner JA, Pérez-Sánchez J
Published in: Frontiers in Physiology, Issue 14, 2023, Page(s) 1272267, ISSN 1664-042X
Publisher: Frontiers Research Foundation
DOI: 10.3389/fphys.2023.1272267

Reshaping of gut microbiota in gilthead sea bream fed microbial and processed animal proteins as the main dietary protein source

Author(s): Solé-Jiménez P, Naya-Català F, Piazzon MC, Estensoro I, Calduch-Giner JÀ, Sitjà-Bobadilla A, Van Mullem D, Pérez-Sánchez J
Published in: Frontiers in Marine Science, Issue 8, 2021, Page(s) 705041, ISSN 2296-7745
Publisher: Frontiers Media
DOI: 10.3389/fmars.2021.705041

Cross-Talk Between Intestinal Microbiota and Host Gene Expression in Gilthead Sea Bream (Sparus aurata) Juveniles: Insights in Fish Feeds for Increased Circularity and Resource Utilization

Author(s): Fernando Naya-Català, Gabriella do Vale Pereira, M. Carla Piazzon, Ana Margarida Fernandes, Josep Alvar Calduch-Giner, Ariadna Sitjà-Bobadilla, Luis E. C. Conceição, Jaume Pérez-Sánchez
Published in: Frontiers in Physiology, Issue 12, 2021, Page(s) 748265, ISSN 1664-042X
Publisher: Frontiers Research Foundation
DOI: 10.3389/fphys.2021.748265

A Novel Miniaturized Biosensor for Monitoring Atlantic Salmon Swimming Activity and Respiratory Frequency

Author(s): Jelena Kolarevic, Josep Calduch-Giner, Åsa M. Espmark, Tor Evensen, Javier Sosa, Jaume Pérez-Sánchez
Published in: Animals, Issue 11/8, 2021, Page(s) 2403, ISSN 2076-2615
Publisher: MDPI
DOI: 10.3390/ani11082403

Fish microbiomics: Strengths and limitations of MinION sequencing of gilthead sea bream (Sparus aurata) intestinal microbiota

Author(s): Toxqui-Rodríguez S, Naya-Català F, Sitjà-Bobadilla A, Piazzon MA, Pérez-Sánchez J
Published in: Aquaculture, Issue 569, 2023, Page(s) 739388, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2023.739388

Who is the best surrogate for germ stem cell transplantation in fish?

Author(s): Roman Franěk, Yu Cheng, Michaela Fučíková, Vojtěch Kašpar, Xuan Xie, Mujahid Ali Shah, Otomar Linhart, Ivo Šauman, Martin Pšenička
Published in: Aquaculture, Issue 549, 2022, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737759

Cold-shock androgenesis in common carp (Cyprinus carpio)

Author(s): Vojtěch Kašpar; Martin Hubálek; Martin Pšenička; Katsutoshi Arai; John B. Taggart; Roman Franěk
Published in: Aquaculture, Issue 548, 2022, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.737610

Are bold-shy personalities of European perch (Perca fluviatilis) linked to stress tolerance and immunity? A scope of harnessing fish behavior in aquaculture

Author(s): Tatyana Gebauer, Radek Gebauer, Petr Císař, Jan Černý, Deepali Rahi Roy, Mahyar Zare, Marieke Verleih, Vlastimil Stejskal, Alexander Rebl
Published in: Fish & Shellfish Immunology, Issue online on 27th October 2023, 2023, Page(s) 109190, ISSN 1050-4648
Publisher: Academic Press
DOI: 10.1016/j.fsi.2023.109190

Targeting the Mild-Hypoxia Driving Force for Metabolic and Muscle Transcriptional Reprogramming of Gilthead Sea Bream (Sparus aurata) Juveniles

Author(s): Fernando Naya-Català, Juan A. Martos-Sitcha, Verónica de las Heras, Paula Simó-Mirabet, Josep À. Calduch-Giner, Jaume Pérez-Sánchez
Published in: Biology, Issue 10/5, 2021, Page(s) 416, ISSN 2079-7737
Publisher: Multidisciplinary Digital Publishing Institute
DOI: 10.3390/biology10050416

Novel DNA-based in situ hybridization method to detect Desmozoon lepeophtherii in Atlantic salmon tissues

Author(s): Ana Herrero, Oswaldo Palenzuela, Hamish Rodger, Chris Matthews, Mar Marcos-López, James E. Bron, Mark P. Dagleish, Kim D. Thompson
Published in: Journal of Fish Diseases, 2022, ISSN 0140-7775
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jfd.13612

A Web-Based Platform for Efficient and Robust Simulation of Aquaculture Systems using Integrated Intelligent Agents

Author(s): Aya Saad, Biao Su, Finn Olav Bjørnson
Published in: Procedia Computer Science, Issue 225 (2023), 2023, Page(s) 4560-4569, ISSN 1877-0509
Publisher: Elsevier
DOI: 10.1016/j.procs.2023.10.454

Enhancement of zebrafish sperm production via a large body-sized surrogate with germ cell transplantation

Author(s): Rigolin Nayak, Roman Franěk, Radek Šindelka, Martin Pšenička
Published in: Communication biology, Issue Volume 6, 14th April 2023, 2023, ISSN 2399-3642
Publisher: Nature
DOI: 10.1038/s42003-023-04800-7

Effects of dietary co-exposure to fungal and herbal functional feed additives on immune parameters and microbial intestinal diversity in rainbow trout (Oncorhynchus mykiss)

Author(s): Julia Mougin, Victor P. Lobanov, M. Danion, R. Roquigny, L. Goardon, T. Grard, T. Morin, L. Labbe, Alyssa Joyce
Published in: Fish & Shellfish Immunology, Issue Volume 137, June 2023, 108773, 2023, ISSN 1050-4648
Publisher: Academic Press
DOI: 10.1016/j.fsi.2023.108773

Optimization of in vitro culture conditions of common carp germ cells for purpose of surrogate production

Author(s): Xuan Xie; Roman Franěk; Martin Pšenička; Fan Chen; Vojtech Kašpar
Published in: Frontiers in Veterinary Science, Issue 9-2022, 2022, ISSN 2297-1769
Publisher: Front.Vet.Sci.
DOI: 10.3389/fvets.2022.1036495

The Effects of Nisin-Producing Lactococcus lactis Strain Used as Probiotic on Gilthead Sea Bream (Sparus aurata) Growth, Gut Microbiota, and Transcriptional Response

Author(s): Federico Moroni, Fernando Naya-Català, M. Carla Piazzon, Simona Rimoldi,Josep Calduch-Giner, Alberto Giardini, Inés Martínez, Fabio Brambilla,Jaume Pérez-Sánchez, Genciana Terova
Published in: Frontiers in marine Science, Issue 8, 2021, Page(s) 659519, ISSN 2296-7745
Publisher: Frontiers Media S.A.
DOI: 10.3389/fmars.2021.659519

Quantifying dominant bacterial genera detected in metagenomic data from fish eggs and larvae using genus-specific primers

Author(s): Babak Najafpour, Patricia I.S. Pinto, V.M. Canario, Deborah M. Power
Published in: Microorganisms, Issue 20, 2021, ISSN 2076-2607
Publisher: MDPI
DOI: 10.1002/mbo3.1274

Use of accelerometer technology for individual tracking of activity patterns, metabolic rates and welfare in farmed gilthead sea bream (Sparus aurata) facing a wide range of stressors

Author(s): E. Rosell-Moll, M.C. Piazzon, J. Sosa, M.Á. Ferrer, E. Cabruja, A. Vega, J.A. Calduch-Giner, A. Sitjà-Bobadilla, M. Lozano, J.A. Montiel-Nelson, J.M. Afonso, J. Pérez-Sánchez
Published in: Aquaculture, Issue 539, 2021, Page(s) 736609, ISSN 0044-8486
Publisher: Elsevier BV
DOI: 10.1016/j.aquaculture.2021.736609

Effects of Hydrostatic Pressure Treatment of Newly Fertilized Eggs on the Ploidy Level and Karyotype of Pikeperch Sander lucioperca (Linnaeus, 1758)

Author(s): Jenő Káldy; Eszter Patakiné Várkonyi; Georgina Fazekas; Zoltán Nagy; Zsuzsanna Jakabné Sándor; Katalin Bogár; Gyula Kovács; Mariann Molnár; Bence Lázár; Katalin Goda; Zsuzsanna Gyöngy; Zsuzsanna Ritter; Péter Nánási; Ákos Horváth; Uroš Ljubobratović
Published in: Life; Volume 11; Issue 12; Pages: 1296, Issue 1, 2021, ISSN 2075-1729
Publisher: MDPI
DOI: 10.3390/life11121296

The Use of Defatted Tenebrio molitor Larvae Meal as a Main Protein Source Is Supported in European Sea Bass (Dicentrarchus labrax) by Data on Growth Performance, Lipid Metabolism, and Flesh Quality

Author(s): Ana Basto, Josep Calduch-Giner, Beatriz Oliveira, Lisa Petit, Tiago Sá, Margarida R. G. Maia, Susana C. Fonseca, Elisabete Matos, Jaume Pérez-Sánchez, Luisa M. P. Valente
Published in: Frontiers in Physiology, Issue 12, 2021, Page(s) 659567, ISSN 1664-042X
Publisher: Frontiers Research Foundation
DOI: 10.3389/fphys.2021.659567

Modulation of Gilthead Sea Bream Gut Microbiota by a Bioactive Egg White Hydrolysate: Interactions Between Bacteria and Host Lipid Metabolism

Author(s): Naya-Català F, Wiggers GA, Piazzon MC, López-Martínez MI, Estensoro I, Calduch-Giner JA, Martínez-Cuesta MC, Requena T,Sitjà-Bobadilla A, Miguel M, Pérez-Sánchez J.
Published in: Frontiers in Marine Sciences, Issue 8, 2021, Page(s) 698484, ISSN 2296-7745
Publisher: Frontiers Media
DOI: 10.3389/fmars.2021.698484

Revising the Impact and Prospects of Activity and Ventilation Rate Bio-Loggers for Tracking Welfare and Fish-Environment Interactions in Salmonids and Mediterranean Farmed Fish

Author(s): Calduch-Giner J, Holhorea PG, Ferrer MÁ, Naya-Català F, Rosell-Moll E, Vega García C, Prunet P, Espmark ÅM, Leguen I, Kolarevic J, Vega A, Kerneis T, Goardon L, Afonso JM, Pérez-Sánchez J.
Published in: Frontiers in Marine Science, Issue 9, 2022, Page(s) 854888, ISSN 2296-7745
Publisher: Frontiers Media
DOI: 10.3389/fmars.2022.854888

Are the Main Methionine Sources Equivalent? A Focus on DL-Methionine and DL-Methionine Hydroxy Analog Reveals Differences on Rainbow Trout Hepatic Cell Lines Functions

Author(s): Karine Pinel, Cécile Heraud, Guillaume Morin, Karine Dias, Annaëlle Marcé, Linda Beauclair, Stéphanie Fontagné-Dicharry, Karthik Masagounder, Martina Klünemann, Iban Seiliez and Florian Beaumatin
Published in: International Journal of Molecular Sciences, Issue Semimonthly, 2022, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms23062935

Deliverables

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