Deliverables Documents, reports (1) Public Report Public report to inform about the results of the 6 first months of the project Publications Peer reviewed articles (27) Rapid and qualitative identification of SARS-CoV-2 mutationsassociated with variants of concern using a multiplex RT-PCR assaycoupled with melting analysis Author(s): G. Sberna, L. Fabeni, G. Berno, F. Carletti, E. Specchiarello, F. Colavita, S. Meschi, G. Matusali, A. R. Garbuglia, L. Bordi, E. Lalle Published in: International Journal of Infectious Diseases, 12019712, 2022, ISSN 1201-9712 Publisher: Elsevier BV DOI: 10.1016/j.ijid.2022.06.032 Rueca M, Bartolini B, Gruber CEM, Piralla A, Baldanti F, Giombini E, Messina F, Marchioni L, Ippolito G, Di Caro A, Capobianchi MR. Author(s): Compartmentalized Replication of SARS-Cov-2 in Upper vs. Lower Respiratory Tract Assessed by Whole Genome Quasispecies Analysis. Published in: Microorganisms, 20762607, 2020, ISSN 2076-2607 Publisher: MDPI DOI: 10.3390/microorganisms8091302 Trend of respiratory pathogens during the COVID-19 epidemic Author(s): Giuseppe Sberna, Alessandra Amendola, Maria Beatrice Valli, Fabrizio Carletti, Maria Rosaria Capobianchi, Licia Bordi, Eleonora Lalle Published in: Journal of Clinical Virology, 129, 2020, Page(s) 104470, ISSN 1386-6532 Publisher: Elsevier BV DOI: 10.1016/j.jcv.2020.104470 Rapid and sensitive detection of SARS-CoV-2 RNA using the Simplexa™ COVID-19 direct assay Author(s): Licia Bordi, Antonio Piralla, Eleonora Lalle, Federica Giardina, Francesca Colavita, Monica Tallarita, Giuseppe Sberna, Federica Novazzi, Silvia Meschi, Concetta Castilletti, Angela Brisci, Giulia Minnucci, Veronica Tettamanzi, Fausto Baldanti, Maria Rosaria Capobianchi Published in: Journal of Clinical Virology, 128, 2020, Page(s) 104416, ISSN 1386-6532 Publisher: Elsevier BV DOI: 10.1016/j.jcv.2020.104416 COVID-19 Rapid Antigen Test as Screening Strategy at Points of Entry: Experience in Lazio Region, Central Italy Author(s): Colavita F, Vairo F, Meschi S, Valli MB, Lalle E, Castilletti C, Fusco D, Spiga G, Bartoletti P, Ursino S, Sanguinetti M, Di Caro A, Vaia F, Ippolito G, Capobianchi MR Published in: Biomolecules, 2218273X, 2021, ISSN 2218-273X Publisher: MDPI DOI: 10.3390/biom11030425 SARS-CoV-2 Serum Neutralization Assay: A Traditional Tool for a Brand-New Virus Author(s): Matusali G, Colavita F, Lapa D, Meschi S, Bordi L, Piselli P, Gagliardini R, Corpolongo A, Nicastri E, Antinori A, Ippolito G, Capobianchi MR, Castilletti C Published in: Viruses, 19994915, 2021, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v13040655 Evidences for lipid involvement in SARS-CoV-2 cytopathogenesis Author(s): Nardacci, R., Colavita, F., Castilletti, C. et al. Published in: Cell Death Dis, 20414889, 2021, ISSN 2041-4889 Publisher: Nature Publishing Group DOI: 10.1038/s41419-021-03527-9 Development and Evaluation of a duo SARS-CoV-2 RT-qPCR Assay Combining Two Assays Approved by the World Health Organization Targeting the Envelope and the RNA-Dependant RNA Polymerase (RdRp) Coding Regions Author(s): Pezzi L, Charrel RN, Ninove L, Nougairede A, Molle G, Coutard B, Durand G, Leparc-Goffart I, de Lamballerie X, Thirion L. Published in: Viruses, 19994915, 2020, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v12060686 Investigation of Nasal/Oropharyngeal Microbial Community of COVID-19 Patients by 16S rDNA Sequencing Author(s): Rueca M, Fontana A, Bartolini B, Piselli P, Mazzarelli A, Copetti M, Binda E, Perri F, Gruber CEM, Nicastri E, Marchioni L, Ippolito G, Capobianchi MR, Di Caro A, Pazienza V. Published in: Int J Environ Res Public Health, 16604601, 2021, ISSN 1660-4601 Publisher: MDPI DOI: 10.3390/ijerph18042174 Engineering photonics solutions for COVID-19 Author(s): Maria Soler, Alexis Scholtz, Rene Zeto, Andrea M. Armani Published in: APL Photonics, 5/9, 2020, Page(s) 090901, ISSN 2378-0967 Publisher: AIP Publishing DOI: 10.1063/5.0021270 Virological Characterization of the First 2 COVID-19 Patients Diagnosed in Italy: Phylogenetic Analysis, Virus Shedding Profile From Different Body Sites, and Antibody Response Kinetics Author(s): Colavita F, Lapa D, Carletti F, Lalle E, Messina F, Rueca M, Matusali G, Meschi S, Bordi L, Marsella P, Nicastri E, Marchioni L, Mariano A, Scorzolini L, Ascoli Bartoli T, Di Caro A, Ippolito G, Capobianchi MR, Castilletti C Published in: Open Forum Infec Dis, 23288957, 2020, ISSN 2328-8957 Publisher: Oxford University Press DOI: 10.1093/ofid/ofaa403 Heat Inactivation of Different Types of SARS-CoV-2 Samples: What Protocols for Biosafety, Molecular Detection and Serological Diagnostics? Author(s): Pastorino B, Touret F, Gilles M, de Lamballerie X, Charrel RN Published in: Viruses, 19994915, 2020, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v12070735 Saliva Is a Valid Alternative to Nasopharyngeal Swab in Chemiluminescence-Based Assay for Detection of SARS-CoV-2 Antigen Author(s): Amendola A, Sberna G, Lalle E, Colavita F, Castilletti C, Menchinelli G, Posteraro B, Sanguinetti M, Ippolito G, Bordi L, Capobianchi MR Published in: Journal of Clinical Medicine, 20770383, 2021, ISSN 2077-0383 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/jcm10071471 Emergence of Bat-Related Betacoronaviruses: Hazard and Risks Author(s): Roger Frutos, Jordi Serra-Cobo, Lucile Pinault, Marc Lopez Roig, Christian A. Devaux Published in: Frontiers in Microbiology, 12, 2021, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2021.591535 Evaluation of Chemical Protocols for Inactivating SARS-CoV-2 Infectious Samples Author(s): Pastorino B, Touret F, Gilles M, Luciani L, de Lamballerie X, Charrel RN Published in: Viruses, 19994915, 2020, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v12060624 Performance evaluation of Abbott ARCHITECT SARS-CoV-2 IgG immunoassay in comparison with indirect immunofluorescence and virus microneutralization test Author(s): Silvia Meschi, Francesca Colavita, Licia Bordi, Giulia Matusali, Daniele Lapa, Alessandra Amendola, Francesco Vairo, Giuseppe Ippolito, Maria Rosaria Capobianchi, Concetta Castilletti Published in: Journal of Clinical Virology, 129, 2020, Page(s) 104539, ISSN 1386-6532 Publisher: Elsevier BV DOI: 10.1016/j.jcv.2020.104539 First Coronavirus Active Survey in Rodents From the Canary Islands Author(s): Monastiri Abir, Martín-Carrillo Natalia, Foronda Pilar, Izquierdo-Rodríguez Elena, Feliu Carles, López-Roig Marc, Miquel Jordi, Ar Gouilh Meriadeg, Serra-Cobo Jordi Published in: Frontiers in Veterinary Science, 22971769, 2021, ISSN 2297-1769 Publisher: Frontiers DOI: 10.3389/fvets.2021.708079 Virological and Serological Characterisation of SARS-CoV-2 Infections Diagnosed After mRNA BNT162b2 Vaccination Between December 2020 and March 2021 Author(s): Colavita Francesca, Meschi Silvia, Gruber Cesare Ernesto Maria, Rueca Martina, Vairo Francesco, Matusali Giulia, Lapa Daniele, Giombini Emanuela, De Carli Gabriella, Spaziante Martina, Messina Francesco, Bonfiglio Giulia, Carletti Fabrizio, Lalle Eleonora, Fabeni Lavinia, Berno Giulia, Puro Vincenzo, Bartolini Barbara, Di Caro Antonino, Ippolito Giuseppe, Capobianchi Maria Rosaria, Castilletti Con Published in: Frontiers in Medicine, 2296858X, 2021, ISSN 2296-858X Publisher: Frontiers DOI: 10.3389/fmed.2021.815870 Endonuclease-based genotyping of the RBM as a method to track the emergence or evolution of SARS-CoV-2 variants Author(s): Lopez E, Barthélémy M, Baronti C, Masse S, Falchi A, Durbesson F, Vincentelli R, de Lamballerie X, Charrel R, Coutard B. Published in: iScience, 25890042, 2021, ISSN 2589-0042 Publisher: Cell Press Elsevier DOI: 10.1016/j.isci.2021.103329 Comparison of Allplex™ SARS-CoV-2 Assay, Easy SARS-CoV-2 WE and Lumipulse quantitative SARS-CoV-2 antigen test performance using automated systems for the diagnosis of COVID-19 Author(s): Sberna G, Basile F, Guarino ML, Capobianchi MR, Bordi L, Parisi G Published in: International Journal of Infectious diseases, 12019712, 2021, ISSN 1201-9712 Publisher: Elsevier BV DOI: 10.1016/j.ijid.2021.09.069 Nanophotonic biosensors for point-of-care COVID-19 diagnostics and coronavirus surveillance Author(s): G. Ruiz-Vega, M. Soler, L. M. Lechuga Published in: J Phys Photonics, 25157647, 2021, ISSN 2515-7647 Publisher: IOP Science DOI: 10.1088/2515-7647/abd4ee Rapid and direct quantification of the SARS-CoV-2 virus with an ultrasensitive nanobody-based photonic nanosensor Author(s): Gisela Ruiz-Vega; Maria Soler; M. Carmen Estevez; Patricia Ramirez-Priego; Martalu D. Pazos; María A. Noriega; Yago Margolles; Clara Francés-Gómez; Ron Geller; Giulia Matusali; Francesca Colavita; Antonino di Caro; José M. Casasnovas; Luis Angel Fernández; Laura M. Lechuga Published in: Sensors and Diagnostics, 1, 2022, ISSN 2635-0998 Publisher: Royal Society of Chemistry DOI: 10.1039/d2sd00082b On Behalf Of Inmi ReCOVeRI Study Group. Frequency and Duration of SARS-CoV-2 Shedding in Oral Fluid Samples Assessed by a Modified Commercial Rapid Molecular Assay Author(s): Bordi L, Sberna G, Lalle E, Piselli P, Colavita F, Nicastri E, Antinori A, Boumis E, Petrosillo N, Marchioni L, Minnucci G, D'Agostini E, Castilletti C, Locatelli F, Zumla A, Ippolito G, Capobianchi MR Published in: Viruses, 19994915, 2020, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v12101184 How Nanophotonic Label-Free Biosensors Can Contribute to Rapid and Massive Diagnostics of Respiratory Virus Infections: COVID-19 Case Author(s): Maria Soler, Maria Carmen Estevez, Maria Cardenosa-Rubio, Alejandro Astua, Laura M. Lechuga Published in: ACS Sensors, 5/9, 2020, Page(s) 2663-2678, ISSN 2379-3694 Publisher: ACS Publications DOI: 10.1021/acssensors.0c01180 SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy Author(s): Bartolini B, Rueca M, Gruber CEM, Messina F, Carletti F, Giombini E, Lalle E, Bordi L, Matusali G, Colavita F, Castilletti C, Vairo F, Ippolito G, Capobianchi MR, Di Caro A. Published in: Emerg Ingectious diseases, 10806059, 2020, ISSN 1080-6059 Publisher: Centers for disease control and prevention DOI: 10.3201/eid2608.201525 Label-Free Plasmonic Biosensor for Rapid, Quantitative, and Highly Sensitive COVID-19 Serology: Implementation and Clinical Validation Author(s): Calvo-Lozano O, Sierra M, Soler M, Estévez MC, Chiscano-Camón L, Ruiz-Sanmartin A, Ruiz-Rodriguez JC, Ferrer R, González-López JJ, Esperalba J, Fernández-Naval C, Bueno L, López-Aladid R, Torres A, Fernández-Barat L, Attoumani S, Charrel R, Coutard B, Lechuga LM Published in: analytical chemistry, 15206882, 2022, ISSN 1520-6882 Publisher: ACS Publications DOI: 10.1021/acs.analchem.1c03850 16S rRNA gene sequencing of rectal swab in patients affected by COVID-19 Author(s): Mazzarelli A, Giancola ML, Farina A, Marchioni L, Rueca M, Gruber CEM, Bartolini B, Ascoli Bartoli T, Maffongelli G, Capobianchi MR, Ippolito G, Di Caro A, Nicastri E, Pazienza V Published in: PLoS One, 19326203, 2021, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0247041 Searching for OpenAIRE data... 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