Integrated Services for Infectious Disease Outbreak Research

Project Information

ISIDORe

Grant agreement ID: 101046133

DOI

10.3030/101046133

Project closed

EC signature date 9 February 2022

Start date 1 February 2022

End date 31 July 2025

Funded under

• Research infrastructures

Total cost

€ 20 998 624,00

EU contribution

€ 20 998 624,00

Coordinated by

EUROPEAN RESEARCH INFRASTRUCTURE ON HIGHLY PATHOGENIC AGENTS
Belgium

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (4)

Consolidated ISIDORE catalogue of services & users' guidelines

Consolidated ISIDORE catalogue of services & users’ guidelines

Emergency catalogue of services & minimal users' guidelines

Most relevant ISIDORe services for addressing SARS-CoV-2 variants and minimal guidelines to support Users willing to apply for ISIDORe transnational access.

Policy Brief

Policy document providing brief feedback on the relevance and contribution of the project to the policy areas for research infrastructures in Europe, to inform future policy and programme developments by EU policymakers

Training catalogue

Catalogue of training offer across ISIDORe access providers

Websites, patent fillings, videos etc. (1)

Communication tools

ISIDORe website, common cloud storage & communication materials

Publications

Peer reviewed articles (27)

Comparative Analysis of 2022 Outbreak MPXV and Previous Clade II MPXV

Author(s): Joseph Patrick McGrail, Alberto Paniz Mondolfi, Juan David Ramírez, Santiago Vidal, Adolfo García‐Sastre, Gustavo Palacios, Mari Paz Sanchez‐Seco, Susana Guerra
Published in: Journal of Medical Virology, Issue 96, 2025, ISSN 0146-6615
Publisher: Wiley
DOI: 10.1002/JMV.70023

Development and application of species ID and insecticide resistance assays, for monitoring sand fly Leishmania vectors in the Mediterranean basin and in the Middle East

Author(s): Sofia Balaska; Jahangir Khajehali; Konstantinos Mavridis; Mustafa Akiner; Kyriaki Maria Papapostolou; Latifa Remadi; Ilias Kioulos; Michail Miaoulis; Emmanouil Alexandros Fotakis; Alexandra Chaskopoulou; John Vontas
Published in: PLOS Neglected Tropical Diseases, 2024, ISSN 1935-2735
Publisher: PLOS Neglected Tropical Diseases
DOI: 10.1101/2024.07.30.605769

Are we serologically prepared against an avian influenza pandemic and could seasonal flu vaccines help us?

Author(s): Iván Sanz-Muñoz; Javier Sánchez-Martínez; Carla Rodríguez-Crespo; Corina S. Concha-Santos; Marta Hernández; Silvia Rojo-Rello; Marta Domínguez-Gil; Ahmed Mostafa; Luis Martinez-Sobrido; Jose M. Eiros; Aitor Nogales
Published in: mBio, 2024, ISSN 2150-7511
Publisher: American Society for Microbiology
DOI: 10.1128/MBIO.03721-24

Novel replication-competent reporter-expressing Rift Valley Fever Viruses for molecular studies

Author(s): Aitor Nogales; Celia Alonso; Sandra Moreno; Gema Lorenzo; Belén Borrego; Luis Martinez-Sobrido; Alejandro Brun
Published in: Journal of Virology, 2024, ISSN 1098-5514
Publisher: Journal of Virology
DOI: 10.1128/JVI.01782-24

19n01, a broadly neutralizing antibody against omicron BA.1, BA.2, BA.4/5, and other SARS-CoV-2 variants of concern

Author(s): Melissa Garcia-Vega, Edgar A. Melgoza-Gonzalez, Sofia Hernandez-Valenzuela, Harold Marcotte, Qiang Pan-Hammarstrom, Jesus Hernandez
Published in: iScience, Issue 26 (4), 2023, ISSN 2589-0042
Publisher: iScience
DOI: 10.1016/j.isci.2023.106562

Sustainability of FAIR Life Science Resources and Projects: Lessons Learned from EOSC-Life Research Infrastructures

Author(s): David, R; Burel, J; Heriche, J; Rybina, A; Audergon, P ; Boiten, J; Coppens, F; Crockett, S; Exter K; Fahrener, S; Fratelli, M; Goble, C; Gormanns, P; Grantner, T; Gruning, B; Hancock, J; Harmse, H; Holub, P; Juty, N; Karnbach, G; Karoune, E; Keppler, A;
Published in: Zenodo, 2022
Publisher: Zenodo
DOI: 10.5281/zenodo.8059831

Effectiveness of the sterile insect technique in controlling Aedes albopictus as part of an integrated control measure: evidence from a first small-scale field trial in Switzerland

Author(s): Diego Parrondo Monton, Damiana Ravasi, Valentina Campana, Francesco Pace, Arianna Puggioli, Matteo Tanadini, Eleonora Flacio
Published in: Infectious Diseases of Poverty, Issue 14, 2025, ISSN 2049-9957
Publisher: Springer Science and Business Media LLC
DOI: 10.1186/S40249-025-01360-2

The potential of metal–organic framework MIL-101(Al)–NH2 in the forefront of antiviral protection of cells via interaction with SARS-CoV-2 spike RBD protein and their antibacterial action mediated with hypericin and photodynamic treatment

Author(s): Veronika Huntošová, Anass Benziane, Luboš Zauška, Luboš Ambro, Soňa Olejárová, Jaroslava Joniová, Nina Hlávková, Georges Wagnières, Gabriela Zelenková, Pavel Diko, Jozef Bednarčík, Florina Zákány, Tamás Kovács, Erik Sedlák, György Vámosi, Miroslav Almáši
Published in: Journal of Colloid and Interface Science, Issue 691, 2025, ISSN 0021-9797
Publisher: Elsevier BV
DOI: 10.1016/J.JCIS.2025.137454

Pandemic preparedness — Europe launches research consortium

Author(s): Richard, A; Stepanyan, D; Ewbank, J
Published in: Nature, 2022, ISSN 1476-4687
Publisher: Nature
DOI: 10.1038/D41586-022-00669-4

Novel replication-competent reporter-expressing Rift Valley fever viruses for molecular studies

Author(s): Aitor Nogales, Celia Alonso, Sandra Moreno, Gema Lorenzo, Belén Borrego, Luis Martinez-Sobrido, Alejandro Brun
Published in: Journal of Virology, Issue 99, 2025, ISSN 0022-538X
Publisher: American Society for Microbiology
DOI: 10.1128/JVI.01782-24

Recombinant Influenza A Viruses Expressing Reporter Genes from the Viral NS Segment

Author(s): Luis Martinez-Sobrido, Aitor Nogales
Published in: International Journal of Molecular Sciences, Issue 25, 2025, ISSN 1422-0067
Publisher: MDPI AG
DOI: 10.3390/IJMS251910584

Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens

Author(s): Verónica Mixão, Miguel Pinto, Holger Brendebach, Daniel Sobral, João Dourado Santos, Nicolas Radomski, Anne Sophie Majgaard Uldall, Arkadiusz Bomba, Michael Pietsch, Andrea Bucciacchio, Andrea de Ruvo, Pierluigi Castelli, Ewelina Iwan, Sandra Simon, Claudia E. Coipan, Jörg Linde, Liljana Petrovska, Rolf Sommer Kaas, Katrine Grimstrup Joensen, Sofie Holtsmark Nielsen, Kristoffer Kiil, Karin Lagesen, Adriano Di Pasquale, João Paulo Gomes, Carlus Deneke, Simon H. Tausch, Vítor Borges
Published in: Nature Communications, Issue 16, 2025, ISSN 2041-1723
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41467-025-59246-8

Sharing sensitive data in life sciences: an overview of centralized and federated approaches

Author(s): Maria A Rujano; Jan-Willem Boiten; Christian Ohmann; Steve Canham; Sergio Contrino; Romain David; Jonathan Ewbank; Claudia Filippone; Claire Connellan; Ilse Custers; Rick van Nuland; Michaela Th Mayrhofer; Petr Holub; Eva García Álvarez; Emmanuel Bacry; Nigel Hughes; Mallory A Freeberg; Birgit Schaffhauser; Harald Wagener; Alex Sánchez-Pla; Guido Bertolini; Maria Panagiotopoulou
Published in: Briefings in Bioinformatics, 2024, ISSN 1477-4054
Publisher: Briefings in Bioinformatics
DOI: 10.1093/BIB/BBAE262

Development and application of species ID and insecticide resistance assays, for monitoring sand fly Leishmania vectors in the Mediterranean basin and in the Middle East

Author(s): Sofia Balaska, Jahangir Khajehali, Konstantinos Mavridis, Mustafa Akiner, Kyriaki Maria Papapostolou, Latifa Remadi, Ilias Kioulos, Michail Miaoulis, Emmanouil Alexandros Fotakis, Alexandra Chaskopoulou, John Vontas
Published in: PLOS Neglected Tropical Diseases, Issue 18, 2024, ISSN 1935-2735
Publisher: Public Library of Science (PLoS)
DOI: 10.1371/JOURNAL.PNTD.0012408

Discovery of essential kinetoplastid-insect adhesion proteins and their function in Leishmania-sand fly interactions

Author(s): Ryuji Yanase, Katerina Pruzinova, Barrack O. Owino, Edward Rea, Flávia Moreira-Leite, Atsushi Taniguchi, Shigenori Nonaka, Jovana Sádlová, Barbora Vojtkova, Petr Volf, Jack D. Sunter
Published in: Nature Communications, Issue 15, 2024, ISSN 2041-1723
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41467-024-51291-Z

Are we serologically prepared against an avian influenza pandemic and could seasonal flu vaccines help us?

Author(s): Iván Sanz-Muñoz, Javier Sánchez-Martínez, Carla Rodríguez-Crespo, Corina S. Concha-Santos, Marta Hernández, Silvia Rojo-Rello, Marta Domínguez-Gil, Ahmed Mostafa, Luis Martinez-Sobrido, Jose M. Eiros, Aitor Nogales
Published in: mBio, Issue 16, 2025, ISSN 2150-7511
Publisher: American Society for Microbiology
DOI: 10.1128/MBIO.03721-24

International Journal of Molecular Sciences

Author(s): Luis Martinez-Sobrido; Aitor Nogales
Published in: International Journal of Molecular Sciences, 2024, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/IJMS251910584

Serological evaluation of Crimean-Congo Hemorrhagic fever in humans with High-Risk professional exposure and in residual sera collected in 2022-2023 across Corsica (France)

Author(s): Paloma Kiwan; Morena Gasparine; Dorine Decarreaux; Lisandru Capai; Shirley Masse; Miša Korva; Tatjana Avšič-Županc; Jean Canarelli; Marie-Helene Simeoni; Xavier de Lamballerie; Remi Charrel; Alessandra Falchi
Published in: One Health, 2025, ISSN 2352-7714
Publisher: One Health
DOI: 10.1016/J.ONEHLT.2025.101020

LAMPOX: A Portable and Rapid Molecular Diagnostic Assay for the Epidemic Clade IIb Mpox Virus Detection

Author(s): Anna Rosa Garbuglia, Mallory Draye, Silvia Pauciullo, Daniele Lapa, Eliana Specchiarello, Florence Nazé, Pascal Mertens
Published in: Diagnostics, Issue 15, 2025, ISSN 2075-4418
Publisher: MDPI AG
DOI: 10.3390/DIAGNOSTICS15151959

The role of RCCE-IM in the mpox response: A qualitative reflection process with experts and civil society in three European countries

Author(s): Ruth Kutalek, Paul Grohma, Anna Christina Maukner, Silvia Wojczewski, Leo Palumbo, Cristiana Salvi
Published in: Journal of Infection and Public Health, Issue 18, 2025, ISSN 1876-0341
Publisher: Elsevier BV
DOI: 10.1016/J.JIPH.2025.102787

A Study of the Potential Anti-Inflammatory Drugs Chalcone Derivatives through the Combination of NMR Spectroscopy and Molecular Modeling

Author(s): Nikitas Georgiou; Andromachi Tzani; Kyriaki Vavougyiou; Christos Papadopoulos; Nikolaos Eleftheriadis; Primož Šket; Demeter Tzeli; Tuomas Niemi-aro; Anastasia Detsi; Thomas Mavromoustakos
Published in: Crossref, 2024, ISSN 2310-287X
Publisher: Preprints.org
DOI: 10.20944/PREPRINTS202411.0126.V1

Unleashing the research potential of high-containment animal facilities

Author(s): INRAE
Published in: None, 2023
Publisher: CORDIS
DOI: 10.3030/731014

Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness

Author(s): David, R; Richard, A; Connellan, C; Lauer, K; Chiusano, M; Goble, C; Houde, M; Kemmer, I; Keppler, A; Lieutaud, P; Ohmann, C; Panagiotopoulou, M; Raza Khan, S; Rybina, A; Soiland-Reyes, Stian; Wit, C; Wittner, R; A, R; Marsh, S; Audergon, P; Bonfils, D; C
Published in: Data Science Journal, 2023, ISSN 1683-1470
Publisher: Committee on Data for Science and Technology (CODATA) International Council for Science (ICSU)
DOI: 10.5334/dsj-2023-035

Rational design of the zonulin inhibitor AT1001 derivatives as potential anti SARSCoV-2

Author(s): Simone Di Micco; Rahila Rahimova; Marina Sala; Maria C. Scala; Giovanni Vivenzio; Simona Musella; Graciela Andrei; Kim Remans; Léa Mammri; Robert Snoeck; Giuseppe Bifulco; Francesca Di Matteo; Vincenzo Vestuto; Pietro Campiglia; José A. Márquez; Alessio Fasano
Published in: European Journal of Medicinal Chemistry, 2022, ISSN 1768-3254
Publisher: European Journal of Medicinal Chemistry
DOI: 10.1016/j.ejmech.2022.114857

DNA methylation changes during acute COVID-19 are associated with long-term transcriptional dysregulation in patients’ airway epithelial cells

Author(s): Marey Messingschlager, Sebastian D Mackowiak, Maria Theresa Voelker, Matthias Bieg, Jennifer Loske, Robert Lorenz Chua, Johannes Liebig, Sören Lukassen, Loreen Thürmann, Anke Seegebarth, Sven Twardziok, Daria Doncevic, Carl Herrmann, Stephan Lorenz, Sven Klages, Fridolin Steinbeis, Martin Witzenrath, Florian Kurth, Christian Conrad, Leif E Sander, Naveed Ishaque, Roland Eils, Irina Lehmann, Sven Laudi, Saskia Trump
Published in: EMBO Molecular Medicine, Issue 17, 2025, ISSN 1757-4684
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S44321-025-00215-5

EATRIS: providing the right tools, at the right time, for vaccine development in a pandemic

Author(s): David Morrow, Lucia Gabriele, Antonio Andreu, Florence Bietrix, Anton Ussi, Jan Langermans
Published in: Vaccine Insights, Issue 1 (3), 2022, ISSN 2752-5422
Publisher: Vaccine Insights
DOI: 10.18609/vac.2022.022

" Preprint: ""Be Sustainable Recommendations"" for FAIR Resources in Life Sciences research: EOSC-Life's Lessons "

Author(s): David, R; Rybina, A; Burel, J; Heriche, J; Audergon, P; Boiten, J; Coppens, F; Crockett, S; Exter K; Fahrener, S; Fratelli, M; Goble, C; Gormanns, P; Grantner, T; Gruning,B; Gurwitz,; Hancock, J; Harmse, H; Holub, P; Juty, N; Karnbach, G; Karoune, E; Kepp
Published in: Zenodo, 2023, Page(s) Zenodo
Publisher: Zenodo
DOI: 10.5281/zenodo.8247376

Other (2)

Selection and characterization of DNA aptamers targeting the surface Borrelia protein CspZ with high-throughput cross-over SELEX

Author(s): Mickaël Guérin; Marylène Vandevenne; André Matagne; Willy Aucher; Julien Verdon; Emmeline Paoli; Jules Ducrotoy; Stéphane Octave; Bérangère Avalle; Irene Maffucci; Séverine Padiolleau-Lefèvre
Published in: Communications Biology, 2025
Publisher: Communications Biology
DOI: 10.1101/2025.01.13.632687

Building a FAIR image data ecosystem for microscopy communities

Author(s): Kemmer, Isabel; Keppler, Antje; Serrano-Solano, Beatriz; Rybina, Arina; Özdemir, Bugra; Bischof, Johanna; El Ghadraoui, Ayoub; Eriksson, John E.; Mathur, Aastha
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/ZENODO.7788899

Book chapters (1)

Use of Rift Valley Fever Virus Expressing NanoLuc Luciferase for the Assessment of Neutralizing Antibodies and Antivirals

Author(s): Belén Borrego, Luis Martinez-Sobrido, Alejandro Brun, Aitor Nogales
Published in: Methods in Molecular Biology, Bunyaviruses, 2025
Publisher: Springer US
DOI: 10.1007/978-1-0716-4338-9_2

Conference proceedings (3)

Introduction to Semantic Interoperability Challenges for RIs

Author(s): David, Romain; Madon, Bénédicte; Torralba, Antonio
Published in: 2023
Publisher: Zenodo
DOI: 10.5281/ZENODO.8077518

2ND ISIDORE USER CONFERENCE - Pandemic Preparedness & Response Through ISIDORe: A Celebration of Users & Research Infrastructures

Author(s): European Research Infrastructure on Highly Pathogenic Agents
Published in: 2025
Publisher: ERINHA
DOI: 10.5281/ZENODO.15583903

Metagenomska analiza virusnih zajednica i detekcija zoonoznih patogenih virusa u populacijama sivog pacova

Author(s): Gajdov, Vladimir; Lazić, Gospava; Vidanović, Dejan; Konstantinov, Jelena; Đurđević, Biljana; Grubač, Siniša; Jokić, Goran; Blažić, Tanja; Nišavić, Jakov; Petrović, Tamaš
Published in: XXVII Simpozijum epizootiologa i epidemiologa (XXVII Epizootiološki dani), Kladovo, 10 - 12. april 2025, 2025
Publisher: Veterinar