Molecular architectures are becoming increasingly important, for example to improve cost and energy efficiency of optoelectronic devices or to miniaturize information storage. In contrast to “classical” semiconductor devices, the properties and functionality of molecular devices are governed by the quantum properties of their nanoscopic building blocks, namely the single molecules, but also by the interactions between them. Processes such as energy conversion depend heavily on the nanoscale interactions between individual charges and the optically excited states of molecules. Investigating such things therefore requires tools that can control and probe both the charge state and the excited state of individual or interacting molecules with submolecular precision. On their own, optical spectroscopy techniques cannot meet these criteria, but in combination with high-resolution scanning probe microscopy, both submolecular spatial resolution and charge state control down to the single electron can be achieved. In this context, CATNIp has focused on understanding the interplay between single charges and optically excited states in individual and coupled molecules. To this end, the unique combination of atomically precise scanning probe methods and optical spectroscopy was used to study and control the intricate interplay of charge transfer and excited state dynamics with near-atomic precision.