Objective Over the last few years the field of proteomics has evolved into a prolific data producer. As a result, various databases that collect and redistribute the acquired data have been established. While data format standards for quantitative proteomics have now been defined and implemented with significant contribution from the recently completed EU ProDaC grant, standards for quantitative proteomics are still lacking.This simultaneous creation of multiple repositories and databases, and lack of standards for quantitative proteomics result in a fragmentation of data, and cause confusion for data submitters and users alike.Based on consortium expertise in the operation of large scale proteomics repositories (PRIDE, PeptideAtlas, Tranche, Peptidome) we aim to implement the next step, regular data exchange between major international proteomics resources. In parallel, we will further develop standards (mzQuantML) for the dynamic field of quantitative mass spectrometry.The main objectives of ProteomExchange are user-oriented: (i) to provide a single point of data submission to the user; (ii) to ensure data availability in all of the different member databases; (iii) to use community standard formats to represent the data, so it becomes accessible to all regardless of data origin; (iv) to provide added value through different views on the same data, from repositories to derived search tools.With an international consortium and support from large scale data producers (ISAS (Germany), U. Cambridge (UK), Karolinska Institute (Sweden)), industry (Pfizer, Philips, Waters), and journals (Nature Biotechnology, MCP, JPR), we here propose a Coordination Action project to solidify an emerging informal collaboration between major repositories into a production-quality data deposition and dissemination consortium on par with the systems so successfully employed by three-dimensional structure databases and nucleotide sequence databases, amongst others. Fields of science natural sciencesbiological sciencesbiochemistrybiomoleculesproteinsproteomicsnatural sciencescomputer and information sciencesdatabasesnatural sciencesbiological sciencesgeneticsnucleotidesnatural sciencescomputer and information sciencesdata sciencedata exchangenatural scienceschemical sciencesanalytical chemistrymass spectrometry Programme(s) FP7-HEALTH - Specific Programme "Cooperation": Health Topic(s) HEALTH.2010.2.1.1-2 - Coordination action(s) on standards in large scale data gathering. FP7-HEALTH-2010-single-stage Call for proposal FP7-HEALTH-2010-single-stage See other projects for this call Funding Scheme CSA-CA - Coordination (or networking) actions Coordinator EUROPEAN MOLECULAR BIOLOGY LABORATORY Address Meyerhofstrasse 1 69117 Heidelberg Germany See on map Region Baden-Württemberg Karlsruhe Heidelberg, Stadtkreis Activity type Research Organisations Administrative Contact Tom Ratcliff (Mr.) Links Contact the organisation Opens in new window Website Opens in new window EU contribution No data Participants (12) Sort alphabetically Sort by EU Contribution Expand all Collapse all THE UNIVERSITY OF LIVERPOOL United Kingdom EU contribution € 204 028,00 Address Brownlow hill 765 foundation building L69 7ZX Liverpool See on map Region North West (England) Merseyside Liverpool Activity type Higher or Secondary Education Establishments Administrative Contact Jenny Lawson (Ms.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data VIB VZW Belgium EU contribution € 187 249,00 Address Rijvisschestraat 120 9052 Zwijnaarde - gent See on map Region Vlaams Gewest Prov. Oost-Vlaanderen Arr. Gent Activity type Research Organisations Administrative Contact Rik Audenaert (Mr.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data EIDGENOESSISCHE TECHNISCHE HOCHSCHULE ZUERICH Switzerland EU contribution € 94 160,00 Address Raemistrasse 101 8092 Zuerich See on map Region Schweiz/Suisse/Svizzera Zürich Zürich Activity type Higher or Secondary Education Establishments Administrative Contact Rudolf Aebersold (Prof.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data Institute for Systems Biology United States EU contribution € 137 302,00 Address North 34th street 1441 98103-8904 Seattle See on map Activity type Research Organisations Administrative Contact Trudy Adkins (Ms.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data UNIVERSITY OF MICHIGAN THE REGENTS OF THE UNIVERSITY OF MICHIGAN United States EU contribution € 68 377,00 Address South street 3003 1068 46109 1274 Ann arbor See on map Activity type Higher or Secondary Education Establishments Administrative Contact Christine Koch (Ms.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data INTEGROMICS SL ITG Spain EU contribution € 186 728,00 Address Avenida de innovacion 1 bic granada parque tecnologia ciencas de la salud 18100 Armilla -granada See on map Activity type Private for-profit entities (excluding Higher or Secondary Education Establishments) Administrative Contact Isabel Cuesta Rojo (Dr.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data RUHR-UNIVERSITAET BOCHUM Germany EU contribution € 222 560,00 Address Universitaetsstrasse 150 44801 Bochum See on map Region Nordrhein-Westfalen Arnsberg Bochum, Kreisfreie Stadt Activity type Higher or Secondary Education Establishments Administrative Contact Rhena Beckmann-Fuchs (Ms.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data SIB SWISS INSTITUTE OF BIOINFORMATICS Switzerland EU contribution € 143 629,00 Address Rue michel servet 1 cmu 1206 Geneve See on map Region Schweiz/Suisse/Svizzera Région lémanique Genève Activity type Research Organisations Administrative Contact Jocelyne Bocquet (Ms.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data GENEVA BIOINFORMATICS (GENEBIO) SA Switzerland EU contribution € 67 559,00 Address Avenue de champel 25 1206 Geneve See on map Activity type Private for-profit entities (excluding Higher or Secondary Education Establishments) Administrative Contact Pierre-Alain Binz (Dr.) Links Contact the organisation Opens in new window Other funding No data WILEY-VCH VERLAG GMBH & CO KGAA Germany EU contribution € 36 380,00 Address Boschstrasse 12 69469 Weinheim See on map Region Baden-Württemberg Karlsruhe Rhein-Neckar-Kreis Activity type Private for-profit entities (excluding Higher or Secondary Education Establishments) Administrative Contact Hans-Joachim Kraus (Dr.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data AGENCIA ESTATAL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTIFICAS Spain EU contribution € 60 000,00 Address Calle serrano 117 28006 Madrid See on map Region Comunidad de Madrid Comunidad de Madrid Madrid Activity type Research Organisations Administrative Contact Eusebio Jiménez Arroyo (Mr.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data SCIENTIFIC NETWORK MANAGEMENT SL Spain EU contribution € 15 533,00 Address Calle ateneu 17 08960 Sant just desvern barcelona See on map Activity type Private for-profit entities (excluding Higher or Secondary Education Establishments) Administrative Contact Pascal Kahlem (Dr.) Links Contact the organisation Opens in new window Website Opens in new window Other funding No data
