Proteomics data collection

Objective

Based on the work of the Human Proteomics Organisation (HUPO) Proteomics Standards Initiative (PSI), we will coordinate the development and implementation of international standards for the representation of high-throughput Proteomics data. Focus will be on standardised data collection, and furthermore on standardised data analysis of protein identification by mass spectrometry. We will establish the basis to develop an international data exchange network of Proteomics data repositories.
This will include the implementation of prototypes of automated data submission pipelines in the leading European laboratories. Participants will be major European Bioinformatics tools developers and Proteomics data providers, and experts from non-European countries and invited Industry Partners to ensure the highest possible international standard.

Fields of science

• natural sciences › computer and information sciences › data science › data exchange
• natural sciences › biological sciences › biochemistry › biomolecules › proteins › proteomics
• natural sciences › chemical sciences › analytical chemistry › mass spectrometry

Programme(s)

• FP6-LIFESCIHEALTH - Life sciences, genomics and biotechnology for health: Thematic Priority 1 under the Focusing and Integrating Community Research programme 2002-2006.

Topic(s)

• LSH-2005-1.1.0-1 - Topics for CA in the area of Fundamental knowledge and basic tools for functional genomics in all organisms

Call for proposal

FP6-2005-LIFESCIHEALTH-6
See other projects for this call

Funding Scheme

CA - Coordination action

Coordinator

RUHR-UNIVERSITAET BOCHUM

Address

Universitaetsstr. 150
Bochum

Participants (11)

EUROPEAN MOLECULAR BIOLOGY LABORATORY - EUROPEAN BIOINFORMATICS INSTITUTE

Address

Meyerhofstrasse 1
Heidelberg

EIDGENOESSISCHE TECHNISCHE HOCHSCHULE - ETH ZUERICH

Address

Raemistrasse 101. Eth Zentrum
Zuerich

FLANDERS INTERUNIVERSITY INSTITUTE FOR BIOTECHNOLOGY VZW

Address

Rijvisschestraat 120
Zwijnaarde

NATIONAL UNIVERSITY UNIVERSITY OF IRELAND, DUBLIN

Address

Belfield
Dublin

SWISS INSTITUTE OF BIOINFORMATICS

Address

Rue Michel-servet 1
Geneva 4

LUNDS UNIVERSITET

Address

Paradisgatan 5C
Lund

THE UNIVERSITY OF MANCHESTER

Address

Oxford Road
Manchester

GENEVA BIOINFORMATICS (GENEBIO) SA

Address

Avenue De Champel 25
Geneva

PROTAGEN AG

Address

Otto-hahn-strasse 15
Dortmund

BRUKER DALTONICS GMBH

Address

Fahrenheitstr. 4
Bremen

MATRIX SCIENCE LIMITED

Address

10 Perrin's Lane'
London