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Revealing the function of dormant soil microorganisms and the cues for their awakening

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Publications

Energetic Basis of Microbial Growth and Persistence in Desert Ecosystems

Author(s): Pok Man Leung, Sean K. Bay, Dimitri V. Meier, Eleonora Chiri, Don A. Cowan, Osnat Gillor, Dagmar Woebken, Chris Greening
Published in: mSystems, 5/2, 2020, ISSN 1098-5530
Publisher: American Society of Microbiology
DOI: 10.1128/msystems.00495-19

Distribution of Mixotrophy and Desiccation Survival Mechanisms across Microbial Genomes in an Arid Biological Soil Crust Community

Author(s): Dimitri V. Meier, Stefanie Imminger, Osnat Gillor, Dagmar Woebken
Published in: mSystems, 6/1, 2021, ISSN 1098-5530
Publisher: American Society of Microbiology
DOI: 10.1128/msystems.00786-20

Limitation of Microbial Processes at Saturation-Level Salinities in a Microbial Mat Covering a Coastal Salt Flat

Author(s): Dimitri V. Meier, Andreas J. Greve, Arjun Chennu, Marit R. van Erk, Thirumahal Muthukrishnan, Raeid M. M. Abed, Dagmar Woebken, Dirk de Beer
Published in: Applied and Environmental Microbiology, 87/17, 2021, ISSN 1098-5336
Publisher: American Society of Microbiology
DOI: 10.1128/aem.00698-21

Evaluation of primers targeting the diazotroph functional gene and development of NifMAP – a bioinformatics pipeline for analyzing nifH amplicon data

Author(s): Angel R, Nepel M, Panhölzl C, Schmidt H, Herbold C, Eichorst SA, Woebken D.
Published in: Front. Microbiol., 2018, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2018.00703

Application of stable-isotope labelling techniques for the detection of active diazotrophs

Author(s): Roey Angel, Christopher Panhölzl, Raphael Gabriel, Craig Herbold, Wolfgang Wanek, Andreas Richter, Stephanie A. Eichorst, Dagmar Woebken
Published in: Environmental Microbiology, 20/1, 2018, Page(s) 44-61, ISSN 1462-2912
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.13954

Microbial temperature sensitivity and biomass change explain soil carbon loss with warming

Author(s): Tom W. N. Walker, Christina Kaiser, Florian Strasser, Craig W. Herbold, Niki I. W. Leblans, Dagmar Woebken, Ivan A. Janssens, Bjarni D. Sigurdsson, Andreas Richter
Published in: Nature Climate Change, 8/10, 2018, Page(s) 885-889, ISSN 1758-678X
Publisher: Nature Publishing Group
DOI: 10.1038/s41558-018-0259-x

Biodegradation of synthetic polymers in soils: Tracking carbon into CO 2 and microbial biomass

Author(s): Michael Thomas Zumstein, Arno Schintlmeister, Taylor Frederick Nelson, Rebekka Baumgartner, Dagmar Woebken, Michael Wagner, Hans-Peter E. Kohler, Kristopher McNeill, Michael Sander
Published in: Science Advances, 4/7, 2018, Page(s) eaas9024, ISSN 2375-2548
Publisher: American Association for the Advancement of Science
DOI: 10.1126/sciadv.aas9024

Soil microbial carbon use efficiency and biomass turnover in a long-term fertilization experiment in a temperate grassland

Author(s): Marie Spohn, Erich M. Pötsch, Stephanie A. Eichorst, Dagmar Woebken, Wolfgang Wanek, Andreas Richter
Published in: Soil Biology and Biochemistry, 97, 2016, Page(s) 168-175, ISSN 0038-0717
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.soilbio.2016.03.008

Recognizing Patterns: Spatial Analysis of Observed Microbial Colonization on Root Surfaces

Author(s): Hannes Schmidt, Naoise Nunan, Alexander Höck, Thilo Eickhorst, Christina Kaiser, Dagmar Woebken, Xavier Raynaud
Published in: Frontiers in Environmental Science, 6, 2018, ISSN 2296-665X
Publisher: Frontiers Media SA
DOI: 10.3389/fenvs.2018.00061

Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth

Author(s): Christopher J. Sedlacek, Andrew T. Giguere, Michael D. Dobie, Brett L. Mellbye, Rebecca V. Ferrell, Dagmar Woebken, Luis A. Sayavedra-Soto, Peter J. Bottomley, Holger Daims, Michael Wagner, Petra Pjevac
Published in: mSystems, 5/1, 2020, ISSN 2379-5077
Publisher: American Society for Microbiology Journals
DOI: 10.1128/msystems.00562-19

Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity

Author(s): Qing Zheng, Yuntao Hu, Shasha Zhang, Lisa Noll, Theresa Böckle, Marlies Dietrich, Craig W. Herbold, Stephanie A. Eichorst, Dagmar Woebken, Andreas Richter, Wolfgang Wanek
Published in: Soil Biology and Biochemistry, 136, 2019, Page(s) 107521, ISSN 0038-0717
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.soilbio.2019.107521

Rapid Transfer of Plant Photosynthates to Soil Bacteria via Ectomycorrhizal Hyphae and Its Interaction With Nitrogen Availability

Author(s): Stefan Gorka, Marlies Dietrich, Werner Mayerhofer, Raphael Gabriel, Julia Wiesenbauer, Victoria Martin, Qing Zheng, Bruna Imai, Judith Prommer, Marieluise Weidinger, Peter Schweiger, Stephanie A. Eichorst, Michael Wagner, Andreas Richter, Arno Schintlmeister, Dagmar Woebken, Christina Kaiser
Published in: Frontiers in Microbiology, 10, 2019, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2019.00168

Acidobacteria are active and abundant members of diverse atmospheric H2-oxidizing communities detected in temperate soils

Author(s): Andrew T. Giguere, Stephanie A. Eichorst, Dimitri V. Meier, Craig W. Herbold, Andreas Richter, Chris Greening, Dagmar Woebken
Published in: The ISME Journal, 15, 2021, ISSN 1751-7370
Publisher: Springer Nature
DOI: 10.1038/s41396-020-00750-8