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Re(defining) CD4+ T Cell Identities One Cell at a Time

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BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq

Author(s): Ida Lindeman, Guy Emerton, Lira Mamanova, Omri Snir, Krzysztof Polanski, Shuo-Wang Qiao, Ludvig M. Sollid, Sarah A. Teichmann, Michael J. T. Stubbington
Published in: Nature Methods, Issue 15/8, 2018, Page(s) 563-565, ISSN 1548-7091
DOI: 10.1038/s41592-018-0082-3

Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves T H 1/T FH fate bifurcation in malaria

Author(s): Tapio Lönnberg, Valentine Svensson, Kylie R. James, Daniel Fernandez-Ruiz, Ismail Sebina, Ruddy Montandon, Megan S. F. Soon, Lily G. Fogg, Arya Sheela Nair, Urijah N. Liligeto, Michael J. T. Stubbington, Lam-Ha Ly, Frederik Otzen Bagger, Max Zwiessele, Neil D. Lawrence, Fernando Souza-Fonseca-Guimaraes, Patrick T. Bunn, Christian R. Engwerda, William R. Heath, Oliver Billker, Oliver Stegle, Ashra
Published in: Science Immunology, Issue 2/9, 2017, Page(s) eaal2192, ISSN 2470-9468
DOI: 10.1126/sciimmunol.aal2192

T cell fate and clonality inference from single-cell transcriptomes

Author(s): Michael J T Stubbington, Tapio Lönnberg, Valentina Proserpio, Simon Clare, Anneliese O Speak, Gordon Dougan, Sarah A Teichmann
Published in: Nature Methods, Issue 13/4, 2016, Page(s) 329-332, ISSN 1548-7091
DOI: 10.1038/nmeth.3800