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OlfSwitch: Neural circuit switches from molecules to behaviour

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Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

Author(s): Li, Hongjie; Janssens, Jasper; De Waegeneer, Maxime; Kolluru, Sai Saroja; Davie, Kristofer; Gardeux, Vincent; Saelens, Wouter; David, Fabrice P. A.; Brbić, Maria; Spanier, Katina; Leskovec, Jure; McLaughlin, Colleen N.; Xie, Qijing; Jones, Robert C.; Brueckner, Katja; Shim, Jiwon; Tattikota, Sudhir Gopal; Schnorrer, Frank; Rust, Katja; Nystul, Todd G.; Carvalho-Santos, Zita; Ribeiro, Carlos; Pal,
Published in: Science, 375, 2022, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abk2432

BAcTrace a new tool for retrograde tracing of neuronal circuits

Author(s): Sebastian Cachero; Marina Gkantia; Alexander Shakeel Bates; Shahar Frechter; Laura Blackie; Laura Blackie; Amy McCarthy; Amy McCarthy; Ben Sutcliffe; Alessio Strano; Alessio Strano; Yoshinori Aso; Gregory S.X.E. Jefferis
Published in: Nature Methods, 17, 2020, Page(s) 1254–1261, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/s41592-020-00989-1

Complete connectomic reconstruction of olfactory projection neurons in the fly brain

Author(s): Bates, A.S.; Schlegel, P.; Roberts, R.J.V.; Drummond, N.; Tamimi, I.F.M.; Turnbull, R.; Zhao, X.; Marin, E.C.; Popovici, P.D.; Dhawan, S.; Jamasb, A.; Javier, A.; Li, F.; Rubin, G.M.; Waddell, S.; Bock, D.D.; Costa, M.; Jefferis, G.S.X.E.
Published in: Current Biology, 3, 2020, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1101/2020.01.19.911453

Olfactory Neurons and Brain Centers Directing Oviposition Decisions in Drosophila

Author(s): Sonia G. Chin; Sarah E. Maguire; Paavo Huoviala; Gregory S.X.E. Jefferis; Christopher Potter
Published in: Cell Reports, Vol 24, Iss 6, Pp 1667-1678 (2018), 3, 2018, ISSN 2211-1247
Publisher: Cell Press
DOI: 10.1016/j.celrep.2018.07.018

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.

Author(s): Zhihao Zheng; J. Scott Lauritzen; Eric Perlman; Camenzind G. Robinson; Matthew Nichols; Daniel E. Milkie; O. N. Torrens; J.H. Price; Corey B. Fisher; Nadiya Sharifi; Steven A. Calle-Schuler; Lucia Kmecova; Iqbal J. Ali; Bill Karsh; Eric T. Trautman; John A. Bogovic; Philipp Hanslovsky; Gregory S.X.E. Jefferis; Michael Kazhdan; Khaled Khairy; Stephan Saalfeld; Richard D. Fetter; Davi D. Bock
Published in: Cell, 174, 2018, Page(s) 730-743, ISSN 1097-4172
Publisher: Cell Press
DOI: 10.17863/cam.36240

A Neural Circuit Arbitrates between Persistence and Withdrawal in Hungry Drosophila

Author(s): Sayin, Sercan; De Backer, Jean-Francois; Siju, KP; Wosniack, Marina E; Lewis, Laurence P; Frisch, Lisa-Marie; Gansen, Benedikt; Schlegel, Philipp; Edmondson-Stait, Amelia; Sharifi, Nadiya; Fisher, Corey B; Calle-Schuler, Steven A; Lauritzen, J Scott; Bock, Davi D; Costa, Marta; Jefferis, Gregory; Gjorgjieva, Julijana; Grunwald Kadow, Ilona C
Published in: Neuron, 3, 2019, Page(s) 432-435, ISSN 0896-6273
Publisher: Cell Press
DOI: 10.17863/cam.48744

Optimization of fluorophores for chemical tagging and immunohistochemistry of Drosophila neurons.

Author(s): Meissner, Geoffrey W.; Grimm, Jonathan B.; Johnston, Rebecca M.; Sutcliffe, Ben; Ng, Julian; Jefferis, Gregory S. X. E.; Cachero, Sebastian; Lavis, Luke D.; Malkesman, Oz
Published in: PLoS ONE, 1, 2018, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.17863/cam.38098

Neurogenetic dissection of the Drosophila lateral horn reveals major outputs, diverse behavioural functions, and interactions with the mushroom body.

Author(s): Michael-John Dolan; Shahar Frechter; Alexander Shakeel Bates; Chuntao Dan; Paavo Huoviala; Ruairí JV Roberts; Philipp Schlegel; Serene Dhawan; Remy Tabano; Heather Dionne; Christina Christoforou; Kari Close; Ben Sutcliffe; Bianca Giuliani; Feng Li; Marta Costa; Gudrun Ihrke; Geoffrey Wilson Meissner; Davi D Bock; Yoshinori Aso; Gerald M Rubin; Gregory SXE Jefferis
Published in: eLife, 3, 2019, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.43079

Information flow, cell types and stereotypy in a full olfactory connectome.

Author(s): Philipp Schlegel; Philipp Schlegel; Alexander Shakeel Bates; Tomke Stürner; Sridhar R. Jagannathan; Nikolas Drummond; Joseph Hsu; Joseph Hsu; Laia Serratosa Capdevila; Alexandre Javier; Elizabeth C. Marin; Asa Barth-Maron; Imaan F.M. Tamimi; Feng Li; Gerald M. Rubin; Stephen M. Plaza; Marta Costa; Gregory S.X.E. Jefferis; Gregory S.X.E. Jefferis
Published in: eLife, 3, 2021, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.66018

Facilitating Neuron-Specific Genetic Manipulations in Drosophila melanogaster Using a Split GAL4 Repressor

Author(s): Michael-John Dolan, Haojiang Luan, William C. Shropshire, Ben Sutcliffe, Benjamin Cocanougher, Robert L. Scott, Shahar Frechter, Marta Zlatic, Gregory S. X. E. Jefferis, Benjamin H. White
Published in: Genetics, 206/2, 2017, Page(s) 775-784, ISSN 0016-6731
Publisher: Genetics Society of America
DOI: 10.1534/genetics.116.199687

Second-Generation Drosophila Chemical Tags: Sensitivity, Versatility, and Speed

Author(s): Ben Sutcliffe, Julian Ng, Thomas O. Auer, Mathias Pasche, Richard Benton, Gregory S. X. E. Jefferis, Sebastian Cachero
Published in: Genetics, 205/4, 2017, Page(s) 1399-1408, ISSN 0016-6731
Publisher: Genetics Society of America
DOI: 10.1534/genetics.116.199281

Pheromone processing in Drosophila

Author(s): Johannes Kohl, Paavo Huoviala, Gregory SXE Jefferis
Published in: Current Opinion in Neurobiology, 34, 2015, Page(s) 149-157, ISSN 0959-4388
Publisher: Elsevier BV
DOI: 10.1016/j.conb.2015.06.009

Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways

Author(s): Karin Panser; Laszlo Tirian; Florian Schulze; Santiago Villalba; Gregory S.X.E. Jefferis; Katja Bühler; Andrew D. Straw
Published in: Current Biology, 2, 2016, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2016.05.052

Genetically targeted 3D visualisation ofDrosophilaneurons under Electron Microscopy and X-Ray Microscopy using miniSOG

Author(s): Julian Ng; Alyssa Browning; Lorenz Lechner; Masako Terada; Gillian Howard; Gregory Jefferis
Published in: Scientific Reports, 4, 2016, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1101/070755

NBLAST: Rapid, Sensitive Comparison of Neuronal Structure and Construction of Neuron Family Databases

Author(s): Marta Costa; James D. Manton; Aaron D. Ostrovsky; Steffen Prohaska; Gregory S.X.E. Jefferis
Published in: Neuron, 3, 2016, ISSN 0896-6273
Publisher: Cell Press
DOI: 10.1016/j.neuron.2016.06.012

Communication from Learned to Innate Olfactory Processing Centers Is Required for Memory Retrieval in Drosophila.

Author(s): Dolan, Michael-John; Belliart-Guérin, Ghislain; Bates, Alexander Shakeel; Frechter, Shahar; Lampin-Saint-Amaux, Aurélie; Aso, Yoshinori; Roberts, Ruairí JV; Schlegel, Philipp; Wong, Allan; Hammad, Adnan; Bock, Davi; Rubin, Gerald M; Preat, Thomas; Plaçais, Pierre-Yves; Jefferis, Gregory
Published in: Neuron, 3, 2018, ISSN 0896-6273
Publisher: Cell Press
DOI: 10.17863/cam.38132

The natverse, a versatile toolbox for combining and analysing neuroanatomical data.

Author(s): Alexander Shakeel Bates; James D. Manton; Sridhar R. Jagannathan; Marta Costa; Marta Costa; Philipp Schlegel; Philipp Schlegel; Torsten Rohlfing; Gregory S.X.E. Jefferis; Gregory S.X.E. Jefferis
Published in: eLife, 5, 2020, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.17863/cam.54736

Neuronal cell types in the fly: single-cell anatomy meets single-cell genomics.

Author(s): Alexander Shakeel Bates; Janssens J; Gregory S.X.E. Jefferis; Gregory S.X.E. Jefferis; Stein Aerts
Published in: Current Opinion in Neurobiology, 56, 2019, Page(s) 125-134, ISSN 0959-4388
Publisher: Elsevier BV
DOI: 10.1016/j.conb.2018.12.012

Functional and Anatomical Specificity in a Higher Olfactory Centre

Author(s): Shahar Frechter; Alexander Shakeel Bates; Sina Tootoonian; Sina Tootoonian; Michael-John Dolan; Michael-John Dolan; James D. Manton; Arian R. Jamasb; Johannes Kohl; Davi D. Bock; Gregory S.X.E. Jefferis; Gregory S.X.E. Jefferis
Published in: eLife, 9, 2019, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.44590

Learning from connectomics on the fly

Author(s): Schlegel, Philipp; Costa, Marta; Jefferis, Gregory SXE
Published in: Current Opinion in Insect Science, 1, 2017, ISSN 2214-5745
Publisher: Elsevier BV
DOI: 10.1016/j.cois.2017.09.011

Neurotransmitter Classification from Electron Microscopy Images at Synaptic Sites in Drosophila

Author(s): Nils Eckstein; Alexander Shakeel Bates; Michelle Du; Volker Hartenstein; Gregory S.X.E. Jefferis; Jan Funke
Published in: bioRxiv, 2020
Publisher: bioRxiv
DOI: 10.1101/2020.06.12.148775

Generating parallel representations of position and identity in the olfactory system

Author(s): Taisz, István; Donà, Erika; Münch, Daniel; Bailey, Shanice N.; Morris, Billy J.; Meechan, Kimberly I.; Stevens, Katie M.; Varela, Irene; Gkantia, Marina; Schlegel, Philipp; Ribeiro, Carlos; Jefferis, Gregory S.X.E.; Galili, Dana S.
Published in: bioRxiv, 1, 2022
Publisher: bioRxiv
DOI: 10.1101/2022.05.13.491877

Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment

Author(s): Li, Peter H.; Lindsey, Larry F.; Januszewski, Michał; Zheng, Zhihao; Bates, Alexander Shakeel; Taisz, István; Tyka, Mike; Nichols, Matthew; Li, Feng; Perlman, Eric; Maitin-Shepard, Jeremy; Blakely, Tim; Leavitt, Laramie; Jefferis, Gregory S.X.E.; Bock, Davi; Jain, Viren
Published in: bioRxiv, 1, 2019
Publisher: bioRxiv
DOI: 10.1101/605634

Neural circuit basis of aversive odour processing in Drosophila from sensory input to descending output.

Author(s): Paavo Huoviala; Michael-John Dolan; Fiona M. Love; Philip Myers; Shahar Frechter; Shigehiro Namiki; Lovisa Pettersson; Ruairí J.V. Roberts; Robert Turnbull; Zane Mitrevica; Patrick Breads; Philipp Schlegel; Alexander Shakeel Bates; Tiago Rodrigues; Yoshinori Aso; Davi Bock; Gerald M. Rubin; Marcus Stensmyr; Gwyneth Card; Marta Costa; Gregory S.X.E. Jefferis
Published in: bioRxiv, 2, 2020, ISSN 2692-8205
Publisher: bioRxiv
DOI: 10.1101/394403