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The ABC of Cell Volume Regulation

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Kinetic Modelling of Transport Inhibition by Substrates in ABC Importers

Author(s): Marijn de Boer, Thorben Cordes, Bert Poolman
Published in: Journal of Molecular Biology, 2020, ISSN 0022-2836
DOI: 10.1016/j.jmb.2020.08.008

Real-Time Conformational Changes and Controlled Orientation of Native Proteins Inside a Protein Nanoreactor

Author(s): Veerle Van Meervelt, Misha Soskine, Shubham Singh, Gea K. Schuurman-Wolters, Hein J. Wijma, Bert Poolman, Giovanni Maglia
Published in: Journal of the American Chemical Society, Issue 139/51, 2017, Page(s) 18640-18646, ISSN 0002-7863
DOI: 10.1021/jacs.7b10106

Energy Coupling Efficiency in the Type I ABC Transporter GlnPQ

Author(s): Jelger A. Lycklama a Nijeholt, Ruslan Vietrov, Gea K. Schuurman-Wolters, Bert Poolman
Published in: Journal of Molecular Biology, Issue 430/6, 2018, Page(s) 853-866, ISSN 0022-2836
DOI: 10.1016/j.jmb.2018.02.001

Niosomes, an alternative for liposomal delivery

Author(s): Rianne Bartelds, Mohammad Hadi Nematollahi, Tjeerd Pols, Marc C. A. Stuart, Abbas Pardakhty, Gholamreza Asadikaram, Bert Poolman
Published in: PLOS ONE, Issue 13/4, 2018, Page(s) e0194179, ISSN 1932-6203
DOI: 10.1371/journal.pone.0194179

Steric exclusion and protein conformation determine the localization of plasma membrane transporters

Author(s): Frans Bianchi, Łukasz Syga, Gemma Moiset, Dian Spakman, Paul E. Schavemaker, Christiaan M. Punter, Anne-Bart Seinen, Antoine M. van Oijen, Andrew Robinson, Bert Poolman
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-02864-2

Protein Linkers Provide Limits on the Domain Interactions in the ABC Importer GlnPQ and Determine the Rate of Transport

Author(s): Gea K. Schuurman-Wolters, Marijn de Boer, Martyna K. Pietrzyk, Bert Poolman
Published in: Journal of Molecular Biology, Issue 430/8, 2018, Page(s) 1249-1262, ISSN 0022-2836
DOI: 10.1016/j.jmb.2018.02.014

Ionic Strength Sensing in Living Cells

Author(s): Boqun Liu, Bert Poolman, Arnold J. Boersma
Published in: ACS Chemical Biology, Issue 12/10, 2017, Page(s) 2510-2514, ISSN 1554-8929
DOI: 10.1021/acschembio.7b00348

Design and Properties of Genetically Encoded Probes for Sensing Macromolecular Crowding

Author(s): Boqun Liu, Christoffer Åberg, Floris J. van Eerden, Siewert J. Marrink, Bert Poolman, Arnold J. Boersma
Published in: Biophysical Journal, Issue 112/9, 2017, Page(s) 1929-1939, ISSN 0006-3495
DOI: 10.1016/j.bpj.2017.04.004

Ribosome surface properties may impose limits on the nature of the cytoplasmic proteome

Author(s): Paul E Schavemaker, Wojciech M Śmigiel, Bert Poolman
Published in: eLife, Issue 6, 2017, ISSN 2050-084X
DOI: 10.7554/eLife.30084

A general mechanism of ribosome dimerization revealed by single-particle cryo-electron microscopy

Author(s): Linda E. Franken, Gert T. Oostergetel, Tjaard Pijning, Pranav Puri, Valentina Arkhipova, Egbert J. Boekema, Bert Poolman, Albert Guskov
Published in: Nature Communications, Issue 8/1, 2017, ISSN 2041-1723
DOI: 10.1038/s41467-017-00718-x

Microorganisms maintain crowding homeostasis

Author(s): Jonas van den Berg, Arnold J. Boersma, Bert Poolman
Published in: Nature Reviews Microbiology, Issue 15/5, 2017, Page(s) 309-318, ISSN 1740-1526
DOI: 10.1038/nrmicro.2017.17

Crystal Structure of the Substrate-Binding Domain from Listeria monocytogenes Bile-Resistance Determinant BilE

Author(s): Stephanie Ruiz, Gea Schuurman-Wolters, Bert Poolman
Published in: Crystals, Issue 6/12, 2016, Page(s) 162, ISSN 2073-4352
DOI: 10.3390/cryst6120162

An updated structural classification of substrate-binding proteins

Author(s): Giel H. Scheepers, Jelger A. Lycklama a Nijeholt, Bert Poolman
Published in: FEBS Letters, Issue 590/23, 2016, Page(s) 4393-4401, ISSN 0014-5793
DOI: 10.1002/1873-3468.12445

Cell Fuelling and Metabolic Energy Conservation in Synthetic Cells

Author(s): Hendrik R. Sikkema, Bauke F. Gaastra, Tjeerd Pols, Bert Poolman
Published in: ChemBioChem, Issue 20/20, 2019, Page(s) 2581-2592, ISSN 1439-4227
DOI: 10.1002/cbic.201900398

A synthetic metabolic network for physicochemical homeostasis

Author(s): Tjeerd Pols, Hendrik R. Sikkema, Bauke F. Gaastra, Jacopo Frallicciardi, Wojciech M. Śmigiel, Shubham Singh, Bert Poolman
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-019-12287-2

Physiochemical Modeling of Vesicle Dynamics upon Osmotic Upshift

Author(s): Matteo Gabba, Bert Poolman
Published in: Biophysical Journal, Issue 118/2, 2020, Page(s) 435-447, ISSN 0006-3495
DOI: 10.1016/j.bpj.2019.11.3383

Weak Acid Permeation in Synthetic Lipid Vesicles and Across the Yeast Plasma Membrane

Author(s): Matteo Gabba, Jacopo Frallicciardi, Joury van ’t Klooster, Ryan Henderson, Łukasz Syga, Robert Mans, Antonius J.A. van Maris, Bert Poolman
Published in: Biophysical Journal, Issue 118/2, 2020, Page(s) 422-434, ISSN 0006-3495
DOI: 10.1016/j.bpj.2019.11.3384

Decreased Effective Macromolecular Crowding in Escherichia coli Adapted to Hyperosmotic Stress

Author(s): Boqun Liu, Zarief Hasrat, Bert Poolman, Arnold J. Boersma
Published in: Journal of Bacteriology, Issue 201/10, 2019, ISSN 0021-9193
DOI: 10.1128/jb.00708-18

Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers

Author(s): Marijn de Boer, Giorgos Gouridis, Ruslan Vietrov, Stephanie L Begg, Gea K Schuurman-Wolters, Florence Husada, Nikolaos Eleftheriadis, Bert Poolman, Christopher A McDevitt, Thorben Cordes
Published in: eLife, Issue 8, 2019, ISSN 2050-084X
DOI: 10.7554/elife.44652

A Trifunctional Linker for Palmitoylation and Peptide and Protein Localization in Biological Membranes

Author(s): Łukasz Syga, Reinder H. Vries, Hugo Oosterhout, Rianne Bartelds, Arnold J. Boersma, Gerard Roelfes, Bert Poolman
Published in: ChemBioChem, 2020, ISSN 1439-4227
DOI: 10.1002/cbic.201900655

Physicochemical considerations for bottom-up synthetic biology

Author(s): Wojciech Mikołaj Śmigiel, Pauline Lefrançois, Bert Poolman
Published in: Emerging Topics in Life Sciences, Issue 3/5, 2019, Page(s) 445-458, ISSN 2397-8554
DOI: 10.1042/etls20190017

Enzymology of the pathway for ATP production by arginine breakdown

Author(s): Tjeerd Pols, Shubham Singh, Cecile Deelman‐Driessen, Bauke F. Gaastra, Bert Poolman
Published in: The FEBS Journal, 2020, ISSN 1742-464X
DOI: 10.1111/febs.15337