Publications Peer reviewed articles (8) An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity Author(s): Camilla Calandrini, Frans Schutgens, Rurika Oka, Thanasis Margaritis, Tito Candelli, Luka Mathijsen, Carola Ammerlaan, Ravian L. van Ineveld, Sepide Derakhshan, Sanne de Haan, Emmy Dolman, Philip Lijnzaad, Lars Custers, Harry Begthel, Hindrik H. D. Kerstens, Lindy L. Visser, Maarten Rookmaaker, Marianne Verhaar, Godelieve A. M. Tytgat, Patrick Kemmeren, Ronald R. de Krijger, Reem Al-Saadi, Kathy P Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723 Publisher: Nature Publishing Group DOI: 10.1038/s41467-020-15155-6 LGR6 marks nephron progenitor cells Author(s): Ravian L. Ineveld, Thanasis Margaritis, Berend A.P. Kooiman, Femke Groenveld, Hendrikus C.R. Ariese, Philip Lijnzaad, Hannah R. Johnson, Jeroen Korving, Ellen J. Wehrens, Frank Holstege, Jacco Rheenen, Jarno Drost, Anne C. Rios, Frank L. Bos Published in: Developmental Dynamics, Issue 13 April 2021, 2021, ISSN 1058-8388 Publisher: John Wiley & Sons Inc. DOI: 10.1002/dvdy.346 Genome‐wide off‐rates reveal how DNA binding dynamics shape transcription factor function Author(s): Wim J de Jonge, Mariël Brok, Philip Lijnzaad, Patrick Kemmeren, Frank CP Holstege Published in: Molecular Systems Biology, Issue 16/10, 2020, ISSN 1744-4292 Publisher: Nature Publishing Group DOI: 10.15252/msb.20209885 An Optimized Chromatin Immunoprecipitation Protocol for Quantification of Protein-DNA Interactions Author(s): Wim J. de Jonge, Mariël Brok, Patrick Kemmeren, Frank C.P. Holstege Published in: STAR Protocols, Issue 1/1, 2020, Page(s) 100020, ISSN 2666-1667 Publisher: Elsevier DOI: 10.1016/j.xpro.2020.100020 Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell Author(s): Gerda Kildisiute, Waleed M. Kholosy, Matthew D. Young, Kenny Roberts, Rasa Elmentaite, Sander R. van Hooff, Clarissa N. Pacyna, Eleonora Khabirova, Alice Piapi, Christine Thevanesan, Eva Bugallo-Blanco, Christina Burke, Lira Mamanova, Kaylee M. Keller, Karin P.S. Langenberg-Ververgaert, Philip Lijnzaad, Thanasis Margaritis, Frank C.P. Holstege, Michelle L. Tas, Marc H.W.A. Wijnen, Max M. van Noese Published in: Science Advances, Issue 7/6, 2021, Page(s) eabd3311, ISSN 2375-2548 Publisher: AAAS DOI: 10.1126/sciadv.abd3311 Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters Author(s): Wim J de Jonge, Eoghan O'Duibhir, Philip Lijnzaad, Dik van Leenen, Marian JA Groot Koerkamp, Patrick Kemmeren, Frank CP Holstege Published in: The EMBO Journal, Issue 36/3, 2017, Page(s) 274-290, ISSN 0261-4189 Publisher: Nature Publishing Group DOI: 10.15252/embj.201695621 CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing Author(s): Jurrian K de Kanter, Philip Lijnzaad, Tito Candelli, Thanasis Margaritis, Frank C P Holstege Published in: Nucleic Acids Research, 2019, ISSN 0305-1048 Publisher: Oxford University Press DOI: 10.1093/nar/gkz543 Single-cell atlas of developing murine adrenal gland reveals relation of Schwann cell precursor signature to neuroblastoma phenotype Author(s): Evelyn S. Hanemaaijer, Thanasis Margaritis, Karin Sanders, Frank L. Bos, Tito Candelli, Hanin Al-Saati, Max M. van Noesel, Friederike A. G. Meyer-Wentrup, Marc van de Wetering, Frank C. P. Holstege, Hans Clevers Published in: Proceedings of the National Academy of Sciences, Issue 118/5, 2021, Page(s) e2022350118, ISSN 0027-8424 Publisher: National Academy of Sciences DOI: 10.1073/pnas.2022350118 Non-peer reviewed articles (1) Identification and characterization of relapse-initiating cells in MLL-rearranged infant ALL by single-cell transcriptomics Author(s): Tito Candelli, Pauline Schneider, Patricia Garrido Castro, Luke A. Jones, Eduard Bodewes, Dedeke Rockx-Brouwer, Rob Pieters, Frank C. P. Holstege, Thanasis Margaritis, Ronald W. Stam Published in: Leukemia, Issue July 24 2021, 2021, ISSN 0887-6924 Publisher: Nature Publishing Group DOI: 10.1038/s41375-021-01341-y Other (1) Sharq, A versatile preprocessing and QC pipeline for Single Cell RNA-seq Author(s): Tito Candelli, Philip Lijnzaad, Mauro J Muraro, Hindrik Kerstens, Patrick Kemmeren, Alexander van Oudenaarden, Thanasis Margaritis, Frank Holstege Published in: BioRxiv (preprint server), Issue 7 February 2018, 2018 Publisher: CSHL DOI: 10.1101/250811 Searching for OpenAIRE data... There was an error trying to search data from OpenAIRE No results available
