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Optimising the management and sustainable use of forest genetic resources in Europe

Deliverables

GenTree data management plan

The main elements defined include: dataset reference and name, dataset description, standards and metadata, data sharing, data archiving and preservation.

Annual newsletter year 1

Electronic newsletters highlighting the major outcomes of the project will be distributed.

Report on all stakeholders engagement events

A report with key points emerging from the stakeholder survey and stakeholders consultations, expressing the perspective and needs of the target final users of the project’s results.

List of key relevant traits useful for characterizing local adaptation and tree responses to global environmental change

Compilation of main traits relevant to characterize local adaptation and tree responses to changing environment.

List of DCUs under threat developed and suggested for ex-situ conservation

List of DCUs under threat developed and suggested for ex-situ conservation

Annual newsletter year 2

Electronic newsletters highlighting the major outcomes of the project will be distributed.

Gaps in the European Conservation network

Gaps in the conservation network identified according to the identified refugia. Results feed into WP5.

Report on policy instruments and measures

Using the policy database as a basis, all instruments and measures are reviewed that may influence the uptake of conservation strategies, including a gap analysis, at different levels of interaction, from national to the international level.

A list of a set of genes to be sequenced across the seven species

The list will be made of genes belonging to networks and pathways involved in forest tree adaptation e.g. phenology, drought stress.

GenTree dissemination and knowledge transfer plan

A strategic document highlighting the steps implemented and tools developed in order to support the dissemination of the projects’ results and knowledge transfer activities.

Leaf samples from pairs of populations in contrasted environments in ten countries

In total 3500 samples (7 species * 20 populations (10 population-pairs) * 25 individuals).

GenTree project website

A website actively maintained to promote and disseminate the project’s results and activities.

Publications

XDesign 1.0: a tool for generation of complex mating designs with optimal contributions

Author(s): Mullin, T.J.
Published in: Arbetsrapport Från Skogforsk 956-2017, 2017, ISSN 1404-305X

OPSEL 2.0: A computer program for optimal selection in tree breeding

Author(s): Mullin, T.J.
Published in: Arbetsrapport Från Skogforsk 954-2017, 2017, ISSN 1404-305X

Assembling optimum breeding populations for the Swedish Scots pine breeding program

Author(s): Mullin, T.J. and Persson, T.
Published in: Arbetsrapport 965-2018, 2018, ISSN 1404-305X

POPSIM: a computer program for simulation of tree breeding programs over multiple generations

Author(s): Mullin, T.J.
Published in: Arbetsrapport Från Skogforsk 984-2018, 2018, ISSN 1404-305X

The functional trait space of tree species is influenced by the species richness of the canopy and the type of forest

Author(s): Raquel Benavides, Michael Scherer‐Lorenzen, Fernando Valladares
Published in: Oikos, 2019, ISSN 0030-1299
DOI: 10.1111/oik.06348

The Tree Height Growth of Most Southern Scot Pine Populations Are Locally Adapted to Drought

Author(s): Natalia Vizcaíno-Palomar, Noelia González-Muñoz, Santiago C. González-Martínez, Ricardo Alía, Marta Benito Garzón
Published in: Forests, Issue 10/7, 2019, Page(s) 555, ISSN 1999-4907
DOI: 10.3390/f10070555

Range‐wide variation in local adaptation and phenotypic plasticity of fitness‐related traits in Fagus sylvatica and their implications under climate change

Author(s): Homero Gárate‐Escamilla, Arndt Hampe, Natalia Vizcaíno‐Palomar, T. Matthew Robson, Marta Benito Garzón
Published in: Global Ecology and Biogeography, Issue 28/9, 2019, Page(s) 1336-1350, ISSN 1466-822X
DOI: 10.1111/geb.12936

The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

Author(s): Elisabet Martínez-Sancho, Lenka Slámová, Sandro Morganti, Claudio Grefen, Barbara Carvalho, Benjamin Dauphin, Christian Rellstab, Felix Gugerli, Lars Opgenoorth, Katrin Heer, Florian Knutzen, Georg von Arx, Fernando Valladares, Stephen Cavers, Bruno Fady, Ricardo Alía, Filippos Aravanopoulos, Camilla Avanzi, Francesca Bagnoli, Evangelos Barbas, Catherine Bastien, Raquel Benavides, Frédéric B
Published in: Scientific Data, Issue 7/1, 2020, Page(s) 1-7, ISSN 2052-4463
DOI: 10.1038/s41597-019-0340-y

Evolutionary relevance of lineages in the European black pine (Pinus nigra) in the transcriptomic era

Author(s): Sanna Olsson, Delphine Grivet, Federica Cattonaro, Vera Vendramin, Guia Giovannelli, Caroline Scotti-Saintagne, Giovanni G. Vendramin, Bruno Fady
Published in: Tree Genetics & Genomes, Issue 16/2, 2020, Page(s) 30, ISSN 1614-2942
DOI: 10.1007/s11295-020-1424-8

Geographic variation of tree height of three pine species (Pinus nigra Arn., P. pinaster Aiton, and P. pinea L.) gathered from common gardens in Europe and North-Africa

Author(s): Natalia Vizcaíno-Palomar, Marta Benito Garzón, Ricardo Alia, Guia Giovannelli, Gerhard Huber, Sven Mutke, Patrick Pastuszka, Annie Raffin, Hassan Sbay, Muhidin Šeho, Denis Vauthier, Bruno Fady
Published in: Annals of Forest Science, Issue 76/3, 2019, ISSN 1286-4560
DOI: 10.1007/s13595-019-0867-2

Inferring phenotypic plasticity and local adaptation to climate across tree species ranges using forest inventory data

Author(s): Fréjaville, T., Fady, B., Kremer, A., Ducousso, A., Benito Garzon, M.
Published in: Global Ecology and Biogeography, 2019, ISSN 1466-822X
DOI: 10.1101/527390

A multiscale approach to detect selection in nonmodel tree species: Widespread adaptation despite population decline in Taxus baccata L

Author(s): Maria Mayol, Miquel Riba, Stephen Cavers, Delphine Grivet, Lucie Vincenot, Federica Cattonaro, Giovanni G. Vendramin, Santiago C. González‐Martínez
Published in: Evolutionary Applications, Issue 13/1, 2019, Page(s) 143-160, ISSN 1752-4571
DOI: 10.1111/eva.12838

Range margin populations show high climate adaptation lags in European trees

Author(s): Thibaut Fréjaville, Natalia Vizcaíno‐Palomar, Bruno Fady, Antoine Kremer, Marta Benito Garzón
Published in: Global Change Biology, Issue 26/2, 2019, Page(s) 484-495, ISSN 1354-1013
DOI: 10.1111/gcb.14881

Intraspecific perspective of phenotypic coordination of functional traits in Scots pine

Author(s): Bárbara Carvalho, Cristina C. Bastias, Adrián Escudero, Fernando Valladares, Raquel Benavides
Published in: PLOS ONE, Issue 15/2, 2020, Page(s) e0228539, ISSN 1932-6203
DOI: 10.1371/journal.pone.0228539

The EuMedClim Database: Yearly Climate Data (1901–2014) of 1 km Resolution Grids for Europe and the Mediterranean Basin

Author(s): Thibaut Fréjaville, Marta Benito Garzón
Published in: Frontiers in Ecology and Evolution, Issue 6, 2018, ISSN 2296-701X
DOI: 10.3389/fevo.2018.00031

Crown defoliation decreases reproduction and wood growth in a marginal European beech population

Author(s): Oddou-Muratorio, Sylvie; Petit-Cailleux, Cathleen; Journé, Valentin; Lingrand, Matthieu; Magdalou, Jean-André; Hurson, Christophe; Garrigue, Joseph; Davi, Hendrik; Magnanou, Elodie
Published in: PCI Ecology, 2019, ISSN 2606-4979
DOI: 10.1101/474874

Evaluation of forest tree breeding strategies based on partial pedigree reconstruction through simulations: Pinus pinaster and Eucalyptus nitens as case studies

Author(s): Laurent Bouffier, Jaroslav Klápště, Mari Suontama, Heidi S. Dungey, Tim J. Mullin
Published in: Canadian Journal of Forest Research, Issue 49/12, 2019, Page(s) 1504-1515, ISSN 0045-5067
DOI: 10.1139/cjfr-2019-0145

Intraspecific trait variability of trees is related to canopy species richness in European forests

Author(s): Raquel Benavides, Fernando Valladares, Christian Wirth, Sandra Müller, Michael Scherer-Lorenzen
Published in: Perspectives in Plant Ecology, Evolution and Systematics, Issue 36, 2019, Page(s) 24-32, ISSN 1433-8319
DOI: 10.1016/j.ppees.2018.12.002

An efficient second-order cone programming approach for optimal selection in tree breeding

Author(s): Makoto Yamashita, Tim J. Mullin, Sena Safarina
Published in: Optimization Letters, Issue 12/7, 2018, Page(s) 1683-1697, ISSN 1862-4472
DOI: 10.1007/s11590-018-1229-y

Optimising selection in tree breeding with constraints on relatedness and operational flexibility

Author(s): Mullin, T.J., Yamashita, M. and Belotti, P.
Published in: Forest genetics for productivity conference: the next generation. 14-18 March 2016, Rotorua, New Zealand - Handbook of Abstracts, 2016, Page(s) 40

Optimum-contribution selection in forest tree breeding – tools for practitioners

Author(s): T. J. Mullin
Published in: 2019 Canadian Forest Genetics Associatiuon Conference, 19-21 August 2019, Lac Delage, QC, 2019, Page(s) 49

Locate and understand the risk of tree mortality under climate change: a multiscale approach combining statistic-based and process-based modelling.

Author(s): Cathleen Petit-Cailleux
Published in: 2020

Variabilidad intraespecífica de rasgos funcionales en Pinus sylvestris a distintas escalas espaciales [Intraspecific variability in functional traits of Pinus sylvestris at several spatial scales]

Author(s): Barbara Carvalho
Published in: 2020

Ecological genomics of local adaptation in maritime pine (Pinus pinaster Aiton).

Author(s): Agathe Hurel
Published in: 2019

Datasets

Genetic variation in early fitness traits across European populations of silver birch (Betula pendula)

Author(s): Solé-Medina, Aida,Heer, Katrin,Opgenoorth, Lars,Kaldewey, Phillip,Danusevicius, Darius,Notivol, Eduardo,Robledo-Arnuncio, Juan José,Ramírez-Valiente, José Alberto
Published in: Zenodo