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European Plant Phenotyping Network 2020

Deliverables

Two Training schools linked to workshop with technology developers

linked to workshop with technology developers held at M18 and M33

Integration procedures and software for data from multiple platform and field experiments

Integration procedures and software for data from multiple platform and field experiments with different but overlapping sets of genotypes across scales of plant organization traits and management conditions

Setting up the virtual networking tools for operators, users and developers

(update on databases or repositories to share phenotyping protocols, guidelines, literature, and results; M12)

Publications

39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition

Author(s): Caterina Caracciolo , Sophie Aubin, Clement Jonquet, Emna Amdouni, Romain David, Leyla Garcia, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa
Published in: Data Science Journal, 2020, Page(s) 1-12, ISSN 1683-1470
Publisher: Committee on Data for Science and Technology (CODATA) International Council for Science (ICSU)
DOI: 10.5334/dsj-2020-047

Improving Genomic Prediction Using High-Dimensional Secondary Phenotypes

Author(s): Arouisse B, Theeuwen T, van Eeuwijk FA, and Kruijer W
Published in: Frontiers in Genetics, 2021, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2021.667358

Safeguarding and using global banana diversity: a holistic approach

Author(s): Ines Van den houwe, Rachel Chase, Julie Sardos, Max Ruas, Els Kempenaers, Valentin Guignon, Sebastien Massart, Sebastien Carpentier, Bart Panis, Mathieu Rouard, Nicolas Roux
Published in: CABI Agriculture and Bioscience, 1/1, 2020, ISSN 2662-4044
Publisher: Springer Nature
DOI: 10.1186/s43170-020-00015-6

"Are crop and detailed physiological models equally ""mechanistic"" for predicting the genetic variability of whole plant behaviour? - the nexus between mechanisms and adaptive strategies"

Author(s): F Tardieu, I S C Granato, E J Van Oosterom, B Parent, G L Hammer
Published in: in silico Plants, 2020, ISSN 2517-5025
Publisher: In Silico Plants
DOI: 10.1093/insilicoplants/diaa011

Interspecific and intraspecific phenotypic diversity for drought adaptation in bioenergy Arundo species

Author(s): Michele Faralli, Kevin Williams, Fiona Corke, Mingai Li, John H. Doonan, Claudio Varotto
Published in: GCB-Bioenergy, Volume13 Issue 4, 2021, ISSN 1757-1707
Publisher: Wiley
DOI: 10.1111/gcbb.12810

Bridging the Gap Between Remote Sensing and Plant Phenotyping—Challenges and Opportunities for the Next Generation of Sustainable Agriculture

Author(s): Miriam Machwitz, Roland Pieruschka, Katja Berger, Martin Schlerf, Helge Aasen, Sven Fahrner, Jose Jiménez-Berni, Frédéric Baret, Uwe Rascher
Published in: Frontiers in Plant Science, 12, 2021, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2021.749374

Different avenues for progress apply to drought tolerance, water use efficiency and yield in dry areas

Author(s): Francois Tardieu
Published in: Current Opinion in Biotechnology, 73, 2022, Page(s) 128-134, ISSN 0958-1669
Publisher: Elsevier BV
DOI: 10.1016/j.copbio.2021.07.019

Differential gene expression and physiological changes during acute or persistent plant virus interactions may contribute to viral symptom differences

Author(s): Réka Pesti, Levente Kontra, Kenny Paul, Imre Vass,Tibor Csorba, Zoltán Havelda, Éva Várallyay
Published in: PlosOne, 2019, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0216618

ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF–containing protein that controls root growth angle in barley and wheat

Author(s): Gwendolyn K. Kirschner, Serena Rosignoli, Li Guo, Isaia Vardanega, Jafargholi Imani, Janine Altmüller, Sara G. Milner, Raffaella Balzano, Kerstin A. Nagel, Daniel Pflugfelder, Cristian Forestan, Riccardo Bovina, Robert Koller, Tyll G. Stöcker, Martin Mascher, James Simmonds, Cristobal Uauy, Heiko Schoof, Roberto Tuberosa, Silvio Salvi, Frank Hochholdinger
Published in: Proceedings of the National Academy of Sciences, 118/35, 2021, Page(s) e2101526118, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2101526118

A European perspective on opportunities and demands for field-based crop phenotyping

Author(s): Merlijn Morisse, Darren M. Wells, Emilie J. Millet, Morten Lillemo, Sven Fahrner, Francesco Cellini, Peter Lootens, Onno Muller, Juan M. Herrera, Alison R. Bentley, Michela Janni
Published in: Field Crops Research, 276, 2022, Page(s) 108371, ISSN 0378-4290
Publisher: Elsevier BV
DOI: 10.1016/j.fcr.2021.108371

Variation of Macro- and Microelements, and Trace Metals in Spring Wheat Genetic Resources in Siberia

Author(s): Shepelev, S.; Morgounov, A.; Flis, P.; Koksel, H.; Li, H.; Savin, T.; Sharma, R.; Wang, J.; Shamanin, V.
Published in: Plants, 2022, Page(s) 11(2), 149, ISSN 2223-7747
Publisher: MDPI
DOI: 10.3390/plants11020149

Elevated CO2 concentration increases photosynthetic sensitivity to nitrogen supply of sorghum in a genotype-dependent manner

Author(s): Rafael V. Ribeiro, Carl-Otto Ottosen, Eva Rosenqvist, Thayna Medanha, Lamis Abdelhakim, Eduardo C. Machado, Paul C. Struik
Published in: Plant Physiology and Biochemistry, volume 168, 2021, Page(s) 202-210, ISSN 0981-9428
Publisher: Elsevier BV
DOI: 10.1016/j.plaphy.2021.10.009

Nighttime gibberellin biosynthesis is influenced by fluctuating environmental conditions and contributes to growth adjustments of Arabidopsis leaves.

Author(s): Putri Prasetyaningrum; Lorenzo Mariotti; Maria Cristina Valeri; Giacomo Novi; Stijn Dhondt; Dirk Inzé; Pierdomenico Perata; Hans van Veen
Published in: Plant Physiology, 1, 2021, ISSN 0032-0889
Publisher: American Society of Plant Biologists
DOI: 10.1101/2020.05.06.080358

Metabolomic Variation Aligns with Two Geographically Distinct Subpopulations of Brachypodium Distachyon before and after Drought Stress

Author(s): Aleksandra Skalska, Manfred Beckmann, Fiona Corke, Gulsemin Savas Tuna, Metin Tuna, John H. Doonan, Robert Hasterok, Luis A. J. Mur
Published in: Cells, 10/3, 2021, Page(s) 683, ISSN 2073-4409
Publisher: MDPI
DOI: 10.3390/cells10030683

Filling the gaps in gene banks: Collecting, characterizing, and phenotyping wild banana relatives of Papua New Guinea

Author(s): David Eyland, Catherine Breton, Julie Sardos, Simon Kallow, Bart Panis, Rony Swennen, Janet Paofa, François Tardieu, Claude Welcker, Steven B. Janssens, Sebastien C. Carpentier
Published in: Crop Science, 2020, ISSN 1435-0653
Publisher: Wiley
DOI: 10.1002/csc2.20320

FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles.

Author(s): Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, et al.
Published in: Data Science Journal, 19 (32), 2020, Page(s) pp.1-11., ISSN 1683-1470
Publisher: Committee on Data for Science and Technology (CODATA) International Council for Science (ICSU)
DOI: 10.5334/dsj-2020-032

Dealing with multi-source and multi-scale information in plant phenomics: the ontology-driven Phenotyping Hybrid Information System

Author(s): Pascal Neveu, Anne Tireau, Nadine Hilgert, Vincent Nègre, Jonathan Mineau-Cesari, Nicolas Brichet, Romain Chapuis, Isabelle Sanchez, Cyril Pommier, Brigitte Charnomordic, François Tardieu, Llorenç Cabrera-Bosquet
Published in: New Phytologist, 2018, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.15385

High-throughput estimation of incident light, light interception and radiation-use efficiency of thousands of plants in a phenotyping platform

Author(s): Llorenç Cabrera-Bosquet, Christian Fournier, Nicolas Brichet, Claude Welcker, Benoît Suard, François Tardieu
Published in: New Phytologist, 212/1, 2016, Page(s) 269-281, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.14027

Genetic and environmental dissection of biomass accumulation in multi-genotype maize canopies

Author(s): Tsu-Wei Chen, Llorenç Cabrera-Bosquet, Santiago Alvarez Prado, Raphaël Perez, Simon Artzet, Christophe Pradal, Aude Coupel-Ledru, Christian Fournier, François Tardieu
Published in: Journal of Experimental Botany, 2018, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/ery309

Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

Author(s): Fred A. van Eeuwijk, Daniela Bustos-Korts, Emilie J. Millet, Martin P. Boer, Willem Kruijer, Addie Thompson, Marcos Malosetti, Hiroyoshi Iwata, Roberto Quiroz, Christian Kuppe, Onno Muller, Konstantinos N. Blazakis, Kang Yu, Francois Tardieu, Scott C. Chapman
Published in: Plant Science, 2018, ISSN 0168-9452
Publisher: Elsevier BV
DOI: 10.1016/j.plantsci.2018.06.018

A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform

Author(s): Nicolas Brichet, Christian Fournier, Olivier Turc, Olivier Strauss, Simon Artzet, Christophe Pradal, Claude Welcker, François Tardieu, Llorenç Cabrera-Bosquet
Published in: Plant Methods, 13/1, 2017, ISSN 1746-4811
Publisher: BioMed Central
DOI: 10.1186/s13007-017-0246-7

Nordic research infrastructures for plant phenotyping

Author(s): Erik Alexandersson, Markku Keinänen, Aakash Chawade, Kristiina Himanen
Published in: Agricultural and Food Science, 27/1, 2018, ISSN 1459-6067
Publisher: M T T Agrifood Research Finland
DOI: 10.23986/afsci.68870

A transnational and holistic breeding approach is needed for sustainable wheat production in the Baltic Sea region

Author(s): Aakash Chawade, Rita Armoniené, Gunilla Berg, Gintaras Brazauskas, Gunilla Frostgård, Mulatu Geleta, Andrii Gorash, Tina Henriksson, Kristiina Himanen, Anne Ingver, Eva Johansson, Lise Nistrup Jørgensen, Mati Koppel, Reine Koppel, Pirjo Makela, Rodomiro Ortiz, Wieslaw Podyma, Thomas Roitsch, Antanas Ronis, Jan T. Svensson, Pernilla Vallenback, Martin Weih
Published in: Physiologia Plantarum, 164/4, 2018, Page(s) 442-451, ISSN 0031-9317
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ppl.12726

What is cost-efficient phenotyping? Optimizing costs for different scenarios

Author(s): Daniel Reynolds, Frederic Baret, Claude Welcker, Aaron Bostrom, Joshua Ball, Francesco Cellini, Argelia Lorence, Aakash Chawade, Mehdi Khafif, Koji Noshita, Mark Mueller-Linow, Ji Zhou, François Tardieu
Published in: Plant Science, 2018, ISSN 0168-9452
Publisher: Elsevier BV
DOI: 10.1016/j.plantsci.2018.06.015

MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis

Author(s): Rainer Schwacke, Gabriel Y. Ponce-Soto, Kirsten Krause, Anthony M. Bolger, Borjana Arsova, Asis Hallab, Kristina Gruden, Mark Stitt, Marie E. Bolger, Björn Usadel
Published in: Molecular Plant, 2019, ISSN 1674-2052
Publisher: Oxford University Press
DOI: 10.1016/j.molp.2019.01.003

Review: New sensors and data-driven approaches—A path to next generation phenomics

Author(s): Thomas Roitsch, Llorenç Cabrera-Bosquet, Antoine Fournier, Kioumars Ghamkhar, José Jiménez-Berni, Francisco Pinto, Eric S. Ober
Published in: Plant Science, 2019, ISSN 0168-9452
Publisher: Elsevier BV
DOI: 10.1016/j.plantsci.2019.01.011

Chlorophyll-depleted wheat mutants are disturbed in photosynthetic electron flow regulation but can retain an acclimation ability to a fluctuating light regime

Author(s): Lorenzo Ferroni, Marek Živčak, Oksana Sytar, Marek Kovár, Nobuyoshi Watanabe, Simonetta Pancaldi, Costanza Baldisserotto, Marián Brestič
Published in: Environmental and Experimental Botany, 2020, Page(s) 104156, ISSN 0098-8472
Publisher: Elsevier BV
DOI: 10.1016/j.envexpbot.2020.104156

High throughput in vitro seed germination screen identified new ABA responsive RING-type ubiquitin E3 ligases in Arabidopsis thaliana

Author(s): M. Pavicic, F. Wang, K. Mouhu, K. Himanen
Published in: Plant Cell, Tissue and Organ Culture (PCTOC), 139/3, 2019, Page(s) 563-575, ISSN 0167-6857
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11240-019-01700-9

Physiological analysis and transcriptome sequencing reveal the effects of combined cold and drought on tomato leaf

Author(s): Rong Zhou, Xiaqing Yu, Tongmin Zhao, Carl-Otto Ottosen, Eva Rosenqvist, Zhen Wu
Published in: BMC Plant Biology, 19/1, 2019, ISSN 1471-2229
Publisher: BioMed Central
DOI: 10.1186/s12870-019-1982-9

Chlorophyll fluorescence and carbohydrate concentration as field selection traits for heat tolerant chickpea genotypes

Author(s): Givemore M. Makonya, John B.O. Ogola, A. Muthama Muasya, Olivier Crespo, Sipho Maseko, Alex J. Valentine, Carl-Otto Ottosen, Eva Rosenqvist, Samson B.M. Chimphango
Published in: Plant Physiology and Biochemistry, 141, 2019, Page(s) 172-182, ISSN 0981-9428
Publisher: Elsevier BV
DOI: 10.1016/j.plaphy.2019.05.031

The Phenotyping Dilemma—The Challenges of a Diversified Phenotyping Community

Author(s): Eva Rosenqvist, Dominik K. Großkinsky, Carl-Otto Ottosen, Rick van de Zedde
Published in: Frontiers in Plant Science, 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00163

Physiological response of tomatoes at drought, heat and their combination followed by recovery

Author(s): Rong Zhou, Lingpeng Kong, Zhen Wu, Eva Rosenqvist, Yinlei Wang, Liping Zhao, Tongmin Zhao, Carl-Otto Ottosen
Published in: Physiologia Plantarum, 165/2, 2019, Page(s) 144-154, ISSN 0031-9317
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ppl.12764

Can High Throughput Phenotyping Help Food Security in the Mediterranean Area?

Author(s): Donatella Danzi, Nunzio Briglia, Angelo Petrozza, Stephan Summerer, Giovanni Povero, Alberto Stivaletta, Francesco Cellini, Domenico Pignone, Domenico De Paola, Michela Janni
Published in: Frontiers in Plant Science, 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00015

Identification and Characterization of a Thermotolerant TILLING Allele of Heat Shock Binding Protein 1 in Tomato

Author(s): Dominik Marko, Asmaa El-shershaby, Filomena Carriero, Stephan Summerer, Angelo Petrozza, Rina Iannacone, Enrico Schleiff, Sotirios Fragkostefanakis
Published in: Genes, 10/7, 2019, Page(s) 516, ISSN 2073-4425
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes10070516

In Vivo Phenotyping for the Early Detection of Drought Stress in Tomato

Author(s): Michela Janni, Nicola Coppede, Manuele Bettelli, Nunzio Briglia, Angelo Petrozza, Stephan Summerer, Filippo Vurro, Donatella Danzi, Francesco Cellini, Nelson Marmiroli, Domenico Pignone, Salvatore Iannotta, Andrea Zappettini
Published in: Plant Phenomics, 2019, 2019, Page(s) 1-10, ISSN 2643-6515
Publisher: American Association for the Advancement of Science
DOI: 10.34133/2019/6168209

Combined high light and heat stress induced complex response in tomato with better leaf cooling after heat priming

Author(s): Rong Zhou, Xiaqing Yu, Xiangnan Li, Thayna Mendanha dos Santos, Eva Rosenqvist, Carl-Otto Ottosen
Published in: Plant Physiology and Biochemistry, 151, 2020, Page(s) 1-9, ISSN 0981-9428
Publisher: Elsevier BV
DOI: 10.1016/j.plaphy.2020.03.011

How do cryptochromes and UVR8 interact in natural and simulated sunlight?

Author(s): Neha Rai, Susanne Neugart, Yan Yan, Fang Wang, Sari M Siipola, Anders V Lindfors, Jana Barbro Winkler, Andreas Albert, Mikael Brosché, Tarja Lehto, Luis O Morales, Pedro J Aphalo
Published in: Journal of Experimental Botany, 70/18, 2019, Page(s) 4975-4990, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erz236

Genomic prediction of maize yield across European environmental conditions

Author(s): Emilie J. Millet, Willem Kruijer, Aude Coupel-Ledru, Santiago Alvarez Prado, Llorenç Cabrera-Bosquet, Sébastien Lacube, Alain Charcosset, Claude Welcker, Fred van Eeuwijk, François Tardieu
Published in: Nature Genetics, 51/6, 2019, Page(s) 952-956, ISSN 1061-4036
Publisher: Nature Publishing Group
DOI: 10.1038/s41588-019-0414-y

To clean or not to clean phenotypic datasets for outlier plants in genetic analyses?

Author(s): Santiago Alvarez Prado, Isabelle Sanchez, Llorenç Cabrera-Bosquet, Antonin Grau, Claude Welcker, François Tardieu, Nadine Hilgert
Published in: Journal of Experimental Botany, 70/15, 2019, Page(s) 3693-3698, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/erz191

Changes in the vertical distribution of leaf area enhanced light interception efficiency in maize over generations of selection

Author(s): Raphaël P.A. Perez, Christian Fournier, Llorenç Cabrera‐Bosquet, Simon Artzet, Christophe Pradal, Nicolas Brichet, Tsu‐Wei Chen, Romain Chapuis, Claude Welcker, François Tardieu
Published in: Plant, Cell & Environment, 42/7, 2019, Page(s) 2105-2119, ISSN 0140-7791
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/pce.13539

Phenomics allows identification of genomic regions affecting maize stomatal conductance with conditional effects of water deficit and evaporative demand

Author(s): Santiago Alvarez Prado, Llorenç Cabrera-Bosquet, Antonin Grau, Aude Coupel-Ledru, Emilie J. Millet, Claude Welcker, François Tardieu
Published in: Plant, Cell & Environment, 41/2, 2018, Page(s) 314-326, ISSN 0140-7791
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/pce.13083

Co-occurrence of Mild Salinity and Drought Synergistically Enhances Biomass and Grain Retardation in Wheat

Author(s): Kenny Paul, János Pauk, Ankica Kondic-Spika, Heinrich Grausgruber, Tofig Allahverdiyev, László Sass, Imre Vass
Published in: Frontiers in Plant Science, 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00501

Image-Based Assessment of Drought Response in Grapevines

Author(s): Nunzio Briglia, Kevin Williams, Dan Wu, Yaochen Li, Sha Tao, Fiona Corke, Giuseppe Montanaro, Angelo Petrozza, Davide Amato, Francesco Cellini, John H. Doonan, Wanneng Yang, Vitale Nuzzo
Published in: Frontiers in Plant Science, 11, 2020, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.00595

Semantic concept schema of the linear mixed model of experimental observations

Author(s): Hanna Ćwiek-Kupczyńska, Katarzyna Filipiak, Augustyn Markiewicz, Philippe Rocca-Serra, Alejandra N. Gonzalez-Beltran, Susanna-Assunta Sansone, Emilie J. Millet, Fred van Eeuwijk, Agnieszka Ławrynowicz, Paweł Krajewski
Published in: Scientific Data, 7/1, 2020, ISSN 2052-4463
Publisher: Springer Nature
DOI: 10.1038/s41597-020-0409-7

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Author(s): Evangelia A. Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis N. Athanasiadis, Inês Chaves, Frederik Coppens, Guillaume Cornut, Bruno V. Costa, Hanna Ćwiek‐Kupczyńska, Bert Droesbeke, Richard Finkers, Kristina Gruden, Astrid Junker, Graham J. King, Paweł Krajewski, Matthias Lange, Marie‐Angélique Laporte, Célia Michotey, Markus Oppermann, Richard Ostler, Hendrik Poorte
Published in: New Phytologist, 227/1, 2020, Page(s) 260-273, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.16544

Omeprazole Treatment Enhances Nitrogen Use Efficiency Through Increased Nitrogen Uptake and Assimilation in Corn

Author(s): Michael James Van Oosten, Emilia Dell’Aversana, Alessandra Ruggiero, Valerio Cirillo, Yves Gibon, Pasqualina Woodrow, Albino Maggio, Petronia Carillo
Published in: Frontiers in Plant Science, 10, 2019, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.01507

A Computation Method Based on the Combination of Chlorophyll Fluorescence Parameters to Improve the Discrimination of Visually Similar Phenotypes Induced by Bacterial Virulence Factors

Author(s): Valérian Méline, Chrystelle Brin, Guillaume Lebreton, Lydie Ledroit, Daniel Sochard, Gilles Hunault, Tristan Boureau, Etienne Belin
Published in: Frontiers in Plant Science, 11, 2020, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2020.00213

Role of the acquisition of a type 3 secretion system in the emergence of novel pathogenic strains of Xanthomonas

Author(s): Valérian Meline, Wesley Delage, Chrystelle Brin, Camille Li-Marchetti, Daniel Sochard, Matthieu Arlat, Céline Rousseau, Armelle Darrasse, Martial Briand, Guillaume Lebreton, Perrine Portier, Marion Fischer-Le Saux, Karine Durand, Marie-Agnès Jacques, Etienne Belin, Tristan Boureau
Published in: Molecular Plant Pathology, 20/1, 2019, Page(s) 33-50, ISSN 1464-6722
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mpp.12737

Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling

Author(s): Jonathon Ashley Gibbs, Michael Pound, Andrew French, Darren Wells, Erik Murchie, Tony Pridmore
Published in: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, Page(s) 1-1, ISSN 1545-5963
Publisher: IEEE Computer Society
DOI: 10.1109/tcbb.2019.2896908

Recovering Wind-Induced Plant Motion in Dense Field Environments via Deep Learning and Multiple Object Tracking

Author(s): Jonathon A. Gibbs, Alexandra J. Burgess, Michael P. Pound, Tony P. Pridmore, Erik H. Murchie
Published in: Plant Physiology, 181/1, 2019, Page(s) 28-42, ISSN 0032-0889
Publisher: American Society of Plant Biologists
DOI: 10.1104/pp.19.00141

Plant Phenotyping: Past, Present, and Future

Author(s): Roland Pieruschka, Uli Schurr
Published in: Plant Phenomics, 2019, 2019, Page(s) 1-6, ISSN 2643-6515
Publisher: American Association for the Advancement of Science
DOI: 10.34133/2019/7507131

Preserving the nutritional quality of crop plants under a changing climate: importance and strategies

Author(s): José C. Soares, Carla S. Santos, Susana M. P. Carvalho, Manuela M. Pintado, Marta W. Vasconcelos
Published in: Plant and Soil, 443/1-2, 2019, Page(s) 1-26, ISSN 0032-079X
Publisher: Kluwer Academic Publishers
DOI: 10.1007/s11104-019-04229-0

Photoprotection and optimization of sucrose usage contribute to faster recovery of photosynthesis after water deficit at high temperatures in wheat

Author(s): Pedro M. P. Correia, Anabela B. Silva, Thomas Roitsch, Elizabete Carmo‐Silva, Jorge Marques da Silva
Published in: Physiologia Plantarum, 2020, ISSN 0031-9317
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/ppl.13227

Making experimental data tables in the life sciences more FAIR: a pragmatic approach

Author(s): Daniel Jacob, Romain David, Sophie Aubin, Yves Gibon
Published in: GigaScience, 9/12, 2020, ISSN 2047-217X
Publisher: Oxford Academic
DOI: 10.1093/gigascience/giaa144

Genetic and Methylome Variation in Turkish Brachypodium Distachyon Accessions Differentiate Two Geographically Distinct Subpopulations.

Author(s): Aleksandra Skalska; Christoph Stritt; Michele Wyler; Hefin Wyn Williams; Martin Vickers; Jiwan Han; Metin Tuna; Gulsemin Savas Tuna; Karolina Susek; Martin T. Swain; Rafal Woycicki; Saurabh Chaudhary; Fiona Corke; John H. Doonan; Anne C. Roulin; Robert Hasterok; Luis A. J. Mur; Luis A. J. Mur
Published in: International Journal of Molecular Sciences, 13 Issue 18, 2020, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21186700

 The effect of heat stress on some main spike traits in 12 wheat cultivars at anthesis and mid-grain filling stage

Author(s):  Mirosavljević M., Mikić S., Špika A.K., Župunski V., Zhou R., Abdelhakim L., Ottosen C.-O.
Published in:  Plant Soil & Environment, 2021, ISSN 1214-1178
Publisher: Ceska Akademie Zemedelskych Ved
DOI: 10.17221/457/2020-pse

Effects of high temperature during anthesis and grain filling on physiological characteristics of winter wheat cultivars

Author(s): Milan Mirosavljević, Sanja Mikić, Vesna Župunski, Ankica Kondić Špika, Dragana Trkulja, Carl-Otto Ottosen, Rong Zhou, Lamis Abdelhakim
Published in: Journal of Agronomy and Crop Science, 2021, ISSN 1439-037X
Publisher: Wiley
DOI: 10.1111/jac.12546

Genotypic and ecological variability of zinc content in the grain of spring bread wheat varieties in the international nursery KASIB

Author(s): V. P. Shamanin, P. Flis, T. V. Savin, S. S. Shepelev, O. G. Kuzmin, A. S. Chursin, I. V. Pototskaya, I. E. Likhenko, I. Yu. Kushnirenko, A. A. Kazak, V. A. Chudinov, T. V. Shelaeva, A. I. Morgounov
Published in: Vavilov Journal of Genetics and Breeding, 25/5, 2021, Page(s) 543-551, ISSN 2500-3259
Publisher: Bionet
DOI: 10.18699/vj21.061

Ionomic Analysis of Spring Wheat Grain Produced in Kazakhstan and Russia

Author(s): Aygul Abugalieva, Paulina Flis, Vladimir Shamanin, Timur Savin, Alexey Morgounov
Published in: Communications in Soil Science and Plant Analysis, 2021, Page(s) 1-8, ISSN 0010-3624
Publisher: Marcel Dekker Inc.
DOI: 10.1080/00103624.2020.1865398

Session VII–Phenotyping Technologies.

Author(s): Misheva S, Kovar M, Zivcak M, Kartseva T, Brestic M.
Published in: InBook of Abstracts, 2021, Page(s) p. 104, ISBN 978-963-454-755-6
Publisher: AKCongress

Spatio-temporal and hierarchical modelling of high-throughput phenotypic data

Author(s): Diana M. Perez, Mara Xose Rodrguez- Alvarez, Martin P. Boer, Emilie J. Millet, Fred A. van Eeuwijk
Published in: Proceedings of the 35th International Workshop on Statistical Modelling (IWSM), 2020, Page(s) 394-397, ISBN 978-84-1319-267-3
Publisher: Servicio Editorial de la Universidad del País Vasco Euskal Herriko Unibertsitateko Argitalpen Zerbitzua

Combined stresses in tomato: effect of a plant-based biostimulant on plant health and stress tolerance

Author(s):  Francesca S., Najai S, Zhou, R, Delmas F, Hernould F, Ottosen C-O, Barone. A, Rigano M.M.
Published in: International Year of Plant Health, 2020
Publisher: FAO

 Non-destructive quantification of drought responses in Sphagnum through image-analysis and machine learning

Author(s): Willem Q.M. van de Koot, Larissa J.J. van Vliet, Dominic Spiliotis, Candida Nibau, John H. Doonan, Henrik Buschmann
Published in: SEB VIRTUAL CONFERENCE 2021, 2021
Publisher: SEB 2021 Virtual Conference
DOI: 10.13140/rg.2.2.12117.14568

Plant phenotyping installations available for EPPN2020 transnational access at the VIB-UGent Center for Plant Systems Biology, Belgium

Author(s): Nathalie Wuyts ; Stijn Dhont
Published in: 2017
Publisher: Nathalie Wuyts

IoLT Smart Pot: An IoT-Cloud Solution for Monitoring Plant Growth in Greenhouses

Author(s): J. Hadabas, M. Hovari, I. Vass, A. Kertesz
Published in: Proceedings of the 9th International Conference on Cloud Computing and Services Science, 2019, Page(s) 144-152, ISBN 978-989-758-365-0
Publisher: SCITEPRESS - Science and Technology Publications
DOI: 10.5220/0007755801440152

Revisiting SIFT for plant foliage in RGB images acquired on a turntable

Author(s): DUTAGACI H., BELIN E., ROUSSEAU D.
Published in: 7thInternational Workshop on Image Analysis Methods for the Plant Sciences, 2019
Publisher: LIRIS laboratory at Université LumièreLyon2

Use of Chlorophyll Fluorescence Imaging to phenotype type 3 effectors impacts of Xanthosmonas on leaves

Author(s): MÉLINE V., BRIN C., LEBRETON G., BELIN E., BOUREAU T
Published in: What lies within: imaging plant microbe interaction - BSPP Presidential meeting, 2019
Publisher: The British Society for Plant Pathology

EMPHASIS - European Infrastructure for Multi-scale Plant Phenomics and Simulation for Food Security in a Chancing Climate

Author(s): Pieruschka, Roland
Published in: CORBEL User Meeting, Heidelberg, Germany, 2019-10-01 - 2019-10-02, 4, 2019
Publisher: CORBEL, UK

Plant phenotyping landscape in Europe and beyond

Author(s): Pieruschka, Roland
Published in: Botanikertagung, Rostock, Germany, 2019-09-15 - 2019-09-19, 1, 2019
Publisher: International Plant Science Conference

RESPONSE OF BEAN (Phaseolus vulgaris L.) TO ELEVATED [CO2] IN YIELD, BIOMASSAND CHLOROPHYLL FLUORESCENCE

Author(s): QUIRÓS-VARGAS, Juan, CALDEIRA, Rafael Diogo, DOS SANTOS, Nicolas Zendonadi, et al.
Published in: IEEE IGARSS 2021 || Brussels, Belgium, 2021, Page(s) 5861-5864
Publisher: researchgate.net

High-Throughput Phenotyping in Plant Stress Response: Methods and Potential Applications to Polyamine Field.

Author(s): D. Marko, N. Briglia, S. Summerer, A. Petrozza, F. Cellini, R. Iannacone
Published in: 2018, Page(s) 373-388
Publisher: Springer New York
DOI: 10.1007/978-1-4939-7398-9_31

Unlocking the potential of plant phenotyping data through integration and data-driven approaches

Author(s): Frederik Coppens, Nathalie Wuyts, Dirk Inzé, Stijn Dhondt
Published in: Current Opinion in Systems Biology, 4, 2017, Page(s) 58-63, ISSN 2452-3100
Publisher: Pascal Falter-Braun and Michael A. Calderwood
DOI: 10.1016/j.coisb.2017.07.002

Phénotypage racinaire haut débit et ses applications à l'étude des interactions plante x microorganisme

Author(s): Salon, C., Baussart, C., Bernard, C., Bourion, V., Jeudy, C., Lamboeuf, M., Martinet, J., Moreau, D., Prudent, M., Voisin, A.-S.
Published in: Sélectionneur Français, 2019, Page(s) 65-75
Publisher: INRAE | UNIV-BOURGOGNE | INRA | AGROECOLOGIE

Unraveling the hidden half of legumes: root phenotyping and microbial interactions

Author(s): Christophe Salon
Published in: Legume Perspectives, 2019, Page(s) 22-25, ISSN 2340-1559
Publisher: The International Legume Society

Phenomenal: An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping

Author(s): Simon Artzet, Tsu-Wei Chen, Jérôme Chopard, Nicolas Brichet, Michael Mielewczik, Sarah Cohen-Boulakia, Llorenç Cabrera-Bosquet, François Tardieu, Christian Fournier, Christophe Pradal
Published in: 2019
Publisher: bioRxiv
DOI: 10.1101/805739

Identification of objects with Uniform Resource Identifier (URI): recommendations for application in plant phenotyping

Author(s): Hollebecq, Jean-Eudes; Cabrera-Bosquet, Llorenç; David, Romain ; Quidoz Marie-Claude; Tardieu François; Tireau Anne; Neveu, Pascal
Published in: 2019
Publisher: INRA | AGROPOLIS | UNIV-MONTPELLIER | CNRS | MONTPELLIER-SUPAGRO | INRAE
DOI: 10.5281/zenodo.3560629

Understanding the Phenotypic and Genetic Mechanisms of plant-plant Interactions

Author(s): Gina Garzon Martinez
Published in: 2019
Publisher: University of Aberystwyth

Datasets

Additional file 3: of Physiological analysis and transcriptome sequencing reveal the effects of combined cold and drought on tomato leaf

Author(s): Zhou, Rong; Xiaqing Yu; Tongmin Zhao; Carl-Otto Ottosen; Rosenqvist, Eva; Wu, Zhen
Published in: figshare

Additional file 2: of Physiological analysis and transcriptome sequencing reveal the effects of combined cold and drought on tomato leaf

Author(s): Zhou, Rong; Xiaqing Yu; Tongmin Zhao; Carl-Otto Ottosen; Rosenqvist, Eva; Wu, Zhen
Published in: figshare

Additional Examples

Author(s): Susanna-Assunta Sansone; Rocca-Serra, Philippe; Krajewski, Pawel; Ćwiek-Kupczyńska, Hanna; Gonzalez-Beltran, Alejandra; Millet, Emilie J.; Filipiak, Katarzyna; Ławrynowicz, Agnieszka; Markiewicz, Augustyn; Eeuwijk, Fred Van
Published in: figshare