Deliverables
held at M20 and M44
Statistical designs for single and multiple platform experiments Two Training schools linked to workshop with technology developerslinked to workshop with technology developers held at M18 and M33
Methodology and software for integration of biological standardization methods for platform data Integration procedures and software for data from multiple platform and field experimentsIntegration procedures and software for data from multiple platform and field experiments with different but overlapping sets of genotypes across scales of plant organization traits and management conditions
Dissemination and exploitation plan Evaluation of the transnational Accessupdates at M30 and M42
Methodologies for the combined analysis of measures in different phenotyping setups for whole plant architectures based on common experiments Improved data exchange protocols in including necessary ontology recommendations Detailed description of “proof-of-concept” studies of dynamic phenotyping based on specific case-studies Setting up the virtual networking tools for operators, users and developers(update on databases or repositories to share phenotyping protocols, guidelines, literature, and results; M12)
EPPN2020 project management (guidelines) Standardized Phenotyping storage solutions ranging from small to very large systems Strategic roadmap for EU phenotyping and sustainability plan Report about outreach activities(update at M48)
Quality control of experimental design for phenotyping platform A solid and sustainable distributed network structure Connection and Integration framework and data discovery solutionsupdate at M10 M18 M21
Summary of the access provisions for UNOTT Summary of the access provisions for FZJ Summary of the access provisions for AU Summary of the access provisions for MTA Summary of the access provisions for INRA 4PMI Summary of the access provisions for SUA Summary of the access provisions of INRA Pheno3C Summary of the access provisions for INRA HiTMe Summary of the access provisions for UHEL Summary of the access provisions for IPK Summary of the access provisions for ALSIA Summary of the access provisions for INRA M3P Summary of the access provisions for ABER Summary of the access provisions for VIB Summary of the access provisions for UCL Summary of the access provisions for HMGU Summary of the access provisions for WU Summary of the access provisions for INRA PhenoplantPublications
Author(s):
Caterina Caracciolo ,
Sophie Aubin,
Clement Jonquet,
Emna Amdouni,
Romain David,
Leyla Garcia,
Brandon Whitehead,
Catherine Roussey,
Armando Stellato,
Ferdinando Villa
Published in:
Data Science Journal, 2020, Page(s) 1-12, ISSN 1683-1470
Publisher:
Committee on Data for Science and Technology (CODATA) International Council for Science (ICSU)
DOI:
10.5334/dsj-2020-047
Author(s):
Arouisse B, Theeuwen T, van Eeuwijk FA, and Kruijer W
Published in:
Frontiers in Genetics, 2021, ISSN 1664-8021
Publisher:
Frontiers Media
DOI:
10.3389/fgene.2021.667358
Author(s):
Ines Van den houwe, Rachel Chase, Julie Sardos, Max Ruas, Els Kempenaers, Valentin Guignon, Sebastien Massart, Sebastien Carpentier, Bart Panis, Mathieu Rouard, Nicolas Roux
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CABI Agriculture and Bioscience, Issue 1/1, 2020, ISSN 2662-4044
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Springer Nature
DOI:
10.1186/s43170-020-00015-6
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F Tardieu, I S C Granato, E J Van Oosterom, B Parent, G L Hammer
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in silico Plants, 2020, ISSN 2517-5025
Publisher:
In Silico Plants
DOI:
10.1093/insilicoplants/diaa011
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Michele Faralli, Kevin Williams, Fiona Corke, Mingai Li, John H. Doonan, Claudio Varotto
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GCB-Bioenergy, Issue Volume13 Issue 4, 2021, ISSN 1757-1707
Publisher:
Wiley
DOI:
10.1111/gcbb.12810
Author(s):
Miriam Machwitz, Roland Pieruschka, Katja Berger, Martin Schlerf, Helge Aasen, Sven Fahrner, Jose Jiménez-Berni, Frédéric Baret, Uwe Rascher
Published in:
Frontiers in Plant Science, Issue 12, 2021, ISSN 1664-462X
Publisher:
Frontiers Media S. A.
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10.3389/fpls.2021.749374
Author(s):
Francois Tardieu
Published in:
Current Opinion in Biotechnology, Issue 73, 2022, Page(s) 128-134, ISSN 0958-1669
Publisher:
Elsevier BV
DOI:
10.1016/j.copbio.2021.07.019
Author(s):
Réka Pesti, Levente Kontra, Kenny Paul, Imre Vass,Tibor Csorba, Zoltán Havelda, Éva Várallyay
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PlosOne, 2019, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0216618
Author(s):
Gwendolyn K. Kirschner, Serena Rosignoli, Li Guo, Isaia Vardanega, Jafargholi Imani, Janine Altmüller, Sara G. Milner, Raffaella Balzano, Kerstin A. Nagel, Daniel Pflugfelder, Cristian Forestan, Riccardo Bovina, Robert Koller, Tyll G. Stöcker, Martin Mascher, James Simmonds, Cristobal Uauy, Heiko Schoof, Roberto Tuberosa, Silvio Salvi, Frank Hochholdinger
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Proceedings of the National Academy of Sciences, Issue 118/35, 2021, Page(s) e2101526118, ISSN 0027-8424
Publisher:
National Academy of Sciences
DOI:
10.1073/pnas.2101526118
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Merlijn Morisse, Darren M. Wells, Emilie J. Millet, Morten Lillemo, Sven Fahrner, Francesco Cellini, Peter Lootens, Onno Muller, Juan M. Herrera, Alison R. Bentley, Michela Janni
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Field Crops Research, Issue 276, 2022, Page(s) 108371, ISSN 0378-4290
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Elsevier BV
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10.1016/j.fcr.2021.108371
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Shepelev, S.; Morgounov, A.; Flis, P.; Koksel, H.; Li, H.; Savin, T.; Sharma, R.; Wang, J.; Shamanin, V.
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Plants, 2022, Page(s) 11(2), 149, ISSN 2223-7747
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MDPI
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10.3390/plants11020149
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Rafael V. Ribeiro, Carl-Otto Ottosen, Eva Rosenqvist, Thayna Medanha, Lamis Abdelhakim, Eduardo C. Machado, Paul C. Struik
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Plant Physiology and Biochemistry, Issue volume 168, 2021, Page(s) 202-210, ISSN 0981-9428
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Elsevier BV
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10.1016/j.plaphy.2021.10.009
Author(s):
Putri Prasetyaningrum; Lorenzo Mariotti; Maria Cristina Valeri; Giacomo Novi; Stijn Dhondt; Dirk Inzé; Pierdomenico Perata; Hans van Veen
Published in:
Plant Physiology, Issue 1, 2021, ISSN 0032-0889
Publisher:
American Society of Plant Biologists
DOI:
10.1101/2020.05.06.080358
Author(s):
Aleksandra Skalska, Manfred Beckmann, Fiona Corke, Gulsemin Savas Tuna, Metin Tuna, John H. Doonan, Robert Hasterok, Luis A. J. Mur
Published in:
Cells, Issue 10/3, 2021, Page(s) 683, ISSN 2073-4409
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MDPI
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10.3390/cells10030683
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David Eyland, Catherine Breton, Julie Sardos, Simon Kallow, Bart Panis, Rony Swennen, Janet Paofa, François Tardieu, Claude Welcker, Steven B. Janssens, Sebastien C. Carpentier
Published in:
Crop Science, 2020, ISSN 1435-0653
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Wiley
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10.1002/csc2.20320
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Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, et al.
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Data Science Journal, Issue 19 (32), 2020, Page(s) pp.1-11., ISSN 1683-1470
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Committee on Data for Science and Technology (CODATA) International Council for Science (ICSU)
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10.5334/dsj-2020-032
Author(s):
Pascal Neveu, Anne Tireau, Nadine Hilgert, Vincent Nègre, Jonathan Mineau-Cesari, Nicolas Brichet, Romain Chapuis, Isabelle Sanchez, Cyril Pommier, Brigitte Charnomordic, François Tardieu, Llorenç Cabrera-Bosquet
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New Phytologist, 2018, ISSN 0028-646X
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Blackwell Publishing Inc.
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10.1111/nph.15385
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Llorenç Cabrera-Bosquet, Christian Fournier, Nicolas Brichet, Claude Welcker, Benoît Suard, François Tardieu
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New Phytologist, Issue 212/1, 2016, Page(s) 269-281, ISSN 0028-646X
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Blackwell Publishing Inc.
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Journal of Experimental Botany, 2018, ISSN 0022-0957
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Oxford University Press
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10.1093/jxb/ery309
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Fred A. van Eeuwijk, Daniela Bustos-Korts, Emilie J. Millet, Martin P. Boer, Willem Kruijer, Addie Thompson, Marcos Malosetti, Hiroyoshi Iwata, Roberto Quiroz, Christian Kuppe, Onno Muller, Konstantinos N. Blazakis, Kang Yu, Francois Tardieu, Scott C. Chapman
Published in:
Plant Science, 2018, ISSN 0168-9452
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Elsevier BV
DOI:
10.1016/j.plantsci.2018.06.018
Author(s):
Nicolas Brichet, Christian Fournier, Olivier Turc, Olivier Strauss, Simon Artzet, Christophe Pradal, Claude Welcker, François Tardieu, Llorenç Cabrera-Bosquet
Published in:
Plant Methods, Issue 13/1, 2017, ISSN 1746-4811
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BioMed Central
DOI:
10.1186/s13007-017-0246-7
Author(s):
Erik Alexandersson, Markku Keinänen, Aakash Chawade, Kristiina Himanen
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Agricultural and Food Science, Issue 27/1, 2018, ISSN 1459-6067
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M T T Agrifood Research Finland
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Physiologia Plantarum, Issue 164/4, 2018, Page(s) 442-451, ISSN 0031-9317
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Daniel Reynolds, Frederic Baret, Claude Welcker, Aaron Bostrom, Joshua Ball, Francesco Cellini, Argelia Lorence, Aakash Chawade, Mehdi Khafif, Koji Noshita, Mark Mueller-Linow, Ji Zhou, François Tardieu
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Plant Science, 2018, ISSN 0168-9452
Publisher:
Elsevier BV
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10.1016/j.plantsci.2018.06.015
Author(s):
Rainer Schwacke, Gabriel Y. Ponce-Soto, Kirsten Krause, Anthony M. Bolger, Borjana Arsova, Asis Hallab, Kristina Gruden, Mark Stitt, Marie E. Bolger, Björn Usadel
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Molecular Plant, 2019, ISSN 1674-2052
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Oxford University Press
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10.1016/j.molp.2019.01.003
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Thomas Roitsch, Llorenç Cabrera-Bosquet, Antoine Fournier, Kioumars Ghamkhar, José Jiménez-Berni, Francisco Pinto, Eric S. Ober
Published in:
Plant Science, 2019, ISSN 0168-9452
Publisher:
Elsevier BV
DOI:
10.1016/j.plantsci.2019.01.011
Author(s):
Lorenzo Ferroni, Marek Živčak, Oksana Sytar, Marek Kovár, Nobuyoshi Watanabe, Simonetta Pancaldi, Costanza Baldisserotto, Marián Brestič
Published in:
Environmental and Experimental Botany, 2020, Page(s) 104156, ISSN 0098-8472
Publisher:
Elsevier BV
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10.1016/j.envexpbot.2020.104156
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M. Pavicic, F. Wang, K. Mouhu, K. Himanen
Published in:
Plant Cell, Tissue and Organ Culture (PCTOC), Issue 139/3, 2019, Page(s) 563-575, ISSN 0167-6857
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Kluwer Academic Publishers
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10.1007/s11240-019-01700-9
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Published in:
BMC Plant Biology, Issue 19/1, 2019, ISSN 1471-2229
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BioMed Central
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Givemore M. Makonya, John B.O. Ogola, A. Muthama Muasya, Olivier Crespo, Sipho Maseko, Alex J. Valentine, Carl-Otto Ottosen, Eva Rosenqvist, Samson B.M. Chimphango
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Plant Physiology and Biochemistry, Issue 141, 2019, Page(s) 172-182, ISSN 0981-9428
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Elsevier BV
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10.1016/j.plaphy.2019.05.031
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Eva Rosenqvist, Dominik K. Großkinsky, Carl-Otto Ottosen, Rick van de Zedde
Published in:
Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
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Frontiers Media S. A.
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10.3389/fpls.2019.00163
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Rong Zhou, Lingpeng Kong, Zhen Wu, Eva Rosenqvist, Yinlei Wang, Liping Zhao, Tongmin Zhao, Carl-Otto Ottosen
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Physiologia Plantarum, Issue 165/2, 2019, Page(s) 144-154, ISSN 0031-9317
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Blackwell Publishing Inc.
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Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
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Frontiers Media S. A.
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10.3389/fpls.2019.00015
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Published in:
Genes, Issue 10/7, 2019, Page(s) 516, ISSN 2073-4425
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Multidisciplinary Digital Publishing Institute (MDPI)
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10.3390/genes10070516
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Michela Janni, Nicola Coppede, Manuele Bettelli, Nunzio Briglia, Angelo Petrozza, Stephan Summerer, Filippo Vurro, Donatella Danzi, Francesco Cellini, Nelson Marmiroli, Domenico Pignone, Salvatore Iannotta, Andrea Zappettini
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Plant Phenomics, Issue 2019, 2019, Page(s) 1-10, ISSN 2643-6515
Publisher:
American Association for the Advancement of Science
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10.34133/2019/6168209
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Rong Zhou, Xiaqing Yu, Xiangnan Li, Thayna Mendanha dos Santos, Eva Rosenqvist, Carl-Otto Ottosen
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Plant Physiology and Biochemistry, Issue 151, 2020, Page(s) 1-9, ISSN 0981-9428
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Journal of Experimental Botany, Issue 70/18, 2019, Page(s) 4975-4990, ISSN 0022-0957
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Emilie J. Millet, Willem Kruijer, Aude Coupel-Ledru, Santiago Alvarez Prado, Llorenç Cabrera-Bosquet, Sébastien Lacube, Alain Charcosset, Claude Welcker, Fred van Eeuwijk, François Tardieu
Published in:
Nature Genetics, Issue 51/6, 2019, Page(s) 952-956, ISSN 1061-4036
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Nature Publishing Group
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Journal of Experimental Botany, Issue 70/15, 2019, Page(s) 3693-3698, ISSN 0022-0957
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Plant, Cell & Environment, Issue 42/7, 2019, Page(s) 2105-2119, ISSN 0140-7791
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Molecular Plant Pathology, Issue 20/1, 2019, Page(s) 33-50, ISSN 1464-6722
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IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, Page(s) 1-1, ISSN 1545-5963
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Plant Phenomics, Issue 2019, 2019, Page(s) 1-6, ISSN 2643-6515
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Plant and Soil, Issue 443/1-2, 2019, Page(s) 1-26, ISSN 0032-079X
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Physiologia Plantarum, 2020, ISSN 0031-9317
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GigaScience, Issue 9/12, 2020, ISSN 2047-217X
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International Journal of Molecular Sciences, Issue 13 Issue 18, 2020, ISSN 1422-0067
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Plant Soil & Environment, 2021, ISSN 1214-1178
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Ceska Akademie Zemedelskych Ved
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Plant Physiology, 2020, ISSN 0032-0889
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Vavilov Journal of Genetics and Breeding, Issue 25/5, 2021, Page(s) 543-551, ISSN 2500-3259
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Bionet
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Communications in Soil Science and Plant Analysis, 2021, Page(s) 1-8, ISSN 0010-3624
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InBook of Abstracts, 2021, Page(s) p. 104, ISBN 978-963-454-755-6
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Proceedings of the 35th International Workshop on Statistical Modelling (IWSM), 2020, Page(s) 394-397, ISBN 978-84-1319-267-3
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Servicio Editorial de la Universidad del País Vasco Euskal Herriko Unibertsitateko Argitalpen Zerbitzua
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Francesca S., Najai S, Zhou, R, Delmas F, Hernould F, Ottosen C-O, Barone. A, Rigano M.M.
Published in:
International Year of Plant Health, 2020
Publisher:
FAO
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Willem Q.M. van de Koot, Larissa J.J. van Vliet, Dominic Spiliotis, Candida Nibau, John H. Doonan, Henrik Buschmann
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SEB VIRTUAL CONFERENCE 2021, 2021
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SEB 2021 Virtual Conference
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Nathalie Wuyts ; Stijn Dhont
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2017
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Proceedings of the 9th International Conference on Cloud Computing and Services Science, 2019, Page(s) 144-152, ISBN 978-989-758-365-0
Publisher:
SCITEPRESS - Science and Technology Publications
DOI:
10.5220/0007755801440152
Author(s):
DUTAGACI H., BELIN E., ROUSSEAU D.
Published in:
7thInternational Workshop on Image Analysis Methods for the Plant Sciences, 2019
Publisher:
LIRIS laboratory at Université LumièreLyon2
Author(s):
MÉLINE V., BRIN C., LEBRETON G., BELIN E., BOUREAU T
Published in:
What lies within: imaging plant microbe interaction - BSPP Presidential meeting, 2019
Publisher:
The British Society for Plant Pathology
Author(s):
Pieruschka, Roland
Published in:
CORBEL User Meeting, Heidelberg, Germany, 2019-10-01 - 2019-10-02, Issue 4, 2019
Publisher:
CORBEL, UK
Author(s):
Pieruschka, Roland
Published in:
Botanikertagung, Rostock, Germany, 2019-09-15 - 2019-09-19, Issue 1, 2019
Publisher:
International Plant Science Conference
Author(s):
QUIRÓS-VARGAS, Juan, CALDEIRA, Rafael Diogo, DOS SANTOS, Nicolas Zendonadi, et al.
Published in:
IEEE IGARSS 2021 || Brussels, Belgium, 2021, Page(s) 5861-5864
Publisher:
researchgate.net
Author(s):
D. Marko, N. Briglia, S. Summerer, A. Petrozza, F. Cellini, R. Iannacone
Published in:
2018, Page(s) 373-388
Publisher:
Springer New York
DOI:
10.1007/978-1-4939-7398-9_31
Author(s):
Frederik Coppens, Nathalie Wuyts, Dirk Inzé, Stijn Dhondt
Published in:
Current Opinion in Systems Biology, Issue 4, 2017, Page(s) 58-63, ISSN 2452-3100
Publisher:
Pascal Falter-Braun and Michael A. Calderwood
DOI:
10.1016/j.coisb.2017.07.002
Author(s):
Salon, C., Baussart, C., Bernard, C., Bourion, V., Jeudy, C., Lamboeuf, M., Martinet, J., Moreau, D., Prudent, M., Voisin, A.-S.
Published in:
Sélectionneur Français, 2019, Page(s) 65-75
Publisher:
INRAE | UNIV-BOURGOGNE | INRA | AGROECOLOGIE
Author(s):
Christophe Salon
Published in:
Legume Perspectives, 2019, Page(s) 22-25, ISSN 2340-1559
Publisher:
The International Legume Society
Author(s):
Simon Artzet, Tsu-Wei Chen, Jérôme Chopard, Nicolas Brichet, Michael Mielewczik, Sarah Cohen-Boulakia, Llorenç Cabrera-Bosquet, François Tardieu, Christian Fournier, Christophe Pradal
Published in:
2019
Publisher:
bioRxiv
DOI:
10.1101/805739
Author(s):
Hollebecq, Jean-Eudes; Cabrera-Bosquet, Llorenç; David, Romain ; Quidoz Marie-Claude; Tardieu François; Tireau Anne; Neveu, Pascal
Published in:
2019
Publisher:
INRA | AGROPOLIS | UNIV-MONTPELLIER | CNRS | MONTPELLIER-SUPAGRO | INRAE
DOI:
10.5281/zenodo.3560629
Author(s):
Gina Garzon Martinez
Published in:
2019
Publisher:
University of Aberystwyth
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