Self Organization in Competition and Diversity

Project Information

SOURCE

Grant agreement ID: 740704

DOI

10.3030/740704

Project closed

EC signature date 10 May 2017

Start date 1 September 2017

End date 28 February 2023

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 2 211 015,00

EU contribution

€ 2 211 015,00

Coordinated by

KOBENHAVNS UNIVERSITET
Denmark

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (34)

Optimal Transport Flows for Distributed Production Networks.

Author(s): Julius B. Kirkegaard; Kim Sneppen
Published in: Kirkegaard , J B & Sneppen , K 2020 , ' Optimal Transport Flows for Distributed Production Networks ' , Physical Review Letters , vol. 124 , no. 20 , 208101 . https://doi.org/10.1103/PhysRevLett.124.208101, Issue 124, 2020, Page(s) 208101, ISSN 1079-7114
Publisher: American Physical Society (United States)
DOI: 10.48550/arxiv.1910.14411

When to wake up? The optimal waking-up strategies for starvation-induced persistence

Author(s): Yusuke Himeoka; Namiko Mitarai
Published in: PLoS Computational Biology, Vol 17, Iss 2, p e1008655 (2021), Issue 17, 2021, Page(s) e1008655, ISSN 1553-7358
Publisher: Public Library of Science
DOI: 10.1101/2019.12.29.890285

Optimal Transport Flows for Distributed Production Networks

Author(s): Julius B. Kirkegaard, Kim Sneppen
Published in: Physical Review Letters, Issue 124/20, 2020, ISSN 0031-9007
Publisher: American Physical Society
DOI: 10.1103/physrevlett.124.208101

Lockdowns exert selection pressure on overdispersion of SARS-CoV-2 variants

Author(s): Bjarke Frost Nielsen; Andreas Eilersen; Lone Simonsen; Kim Sneppen
Published in: Epidemics, Issue 40, 2022, Page(s) 100613, ISSN 1755-4365
Publisher: Elsevier BV
DOI: 10.1016/j.epidem.2022.100613

Establishment of heterochromatin in domain-size-dependent bursts

Author(s): Jan Fabio Nickels, Ashleigh Katrine Edwards, Sebastian Jespersen Charlton, Amanda Møller Mortensen, Sif Christine Lykke Hougaard, Ala Trusina, Kim Sneppen, Geneviève Thon
Published in: Procedeings of the National Academy of Sciences USA, 2021, ISSN 1091-6490
Publisher: United States National Academy of Sciences
DOI: 10.1073/pnas.2022887118

COVID-19 Superspreading Suggests Mitigation by Social Network Modulation.

Author(s): Bjarke Frost Nielsen; Lone Simonsen; Kim Sneppen
Published in: Physical Review Letters, Issue 13, 2021, Page(s) 126, 118301, ISSN 1079-7114
Publisher: American Physical Society
DOI: 10.1103/physrevlett.126.118301

Cost-benefit of limited isolation and testing in COVID-19 mitigation.

Author(s): Andreas Eilersen; Kim Sneppen
Published in: Scientific Report, Issue 12, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-75640-2

Superspreading of airborne pathogens in a heterogeneous world

Author(s): Julius B. Kirkegaard, Joachim Mathiesen, Kim Sneppen
Published in: Scientific Reports, Issue Sci Rep 11, (2021), 2021, Page(s) 11191, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-90666-w

Overdispersion in COVID-19 increases the effectiveness of limiting nonrepetitive contacts for transmission control

Author(s): Kim Sneppen, Bjarke Frost Nielsen, Robert J. Taylor, Lone Simonsen
Published in: Proceedings National Academy of Sciences, 2021, ISSN 1091-6490
Publisher: United States National Academy of Sciences
DOI: 10.1073/pnas.2016623118

Spatial model of Ebola outbreaks contained by behavior change

Author(s): Gustav S. Halvorsen, Lone Simonsen, Kim Sneppen
Published in: PlosOne, 2022, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0264425

The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin

Author(s): Jan Fabio Nickels; Maria Eduarda Della-Rosa; Iñigo Miguelez Goyeneche; Sebastian Jespersen Charlton; Kim Sneppen; Genevieve Thon
Published in: Nickels , J F , Della-Rosa , M E , Miguelez Goyeneche , I , Charlton , S J , Sneppen , K & Thon , G 2022 , ' The transcription factor Atf1 lowers the transition barrier for nucleosome-mediated establishment of heterochromatin ' , Cell Reports , vol. 39 , no. 7 , 110828 . https://doi.org/10.1016/j.celrep.2022.110828, Issue 39, 2022, Page(s) 110828, ISSN 2211-1247
Publisher: Cell Press
DOI: 10.1016/j.celrep.2022.110828

On phage adsorption to bacterial chains

Author(s): Rasmus Skytte Eriksen; Namiko Mitarai; Kim Sneppen
Published in: Biophysical Journal, Issue 14, 2020, ISSN 0006-3495
Publisher: Biophysical Society
DOI: 10.1101/2020.06.10.144675

Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2

Author(s): Bjarke Frost Nielsen; Chadi M. Saad-Roy; Yimei Li; Kim Sneppen; Lone Simonsen; Cécile Viboud; Simon A. Levin; Bryan T. Grenfell
Published in: Plos Computational Biology, Issue 19.2, 2023, Page(s) 2, ISSN 1476-9271
Publisher: Pergamon Press Ltd.
DOI: 10.1371/journal.pcbi.1010896

Superspreading quantified from bursty epidemic trajectories

Author(s): Julius B. Kirkegaard, Kim Sneppen
Published in: Scientific Reports, 2021, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-021-03126-w

Hitchhiking, collapse, and contingency in phage infections of migrating bacterial populations

Author(s): Derek Ping, Tong Wang, David T. Fraebel, Sergei Maslov, Kim Sneppen, Seppe Kuehn
Published in: ISME J, Issue 14, 2020, Page(s) 2007-2018, ISSN 1751-7370
Publisher: nature
DOI: 10.1038/s41396-020-0664-9

From kill the winner to eliminate the winner in open phage-bacteria systems

Author(s): Anastasios Marantos, Namiko Mitarai, Kim Sneppen
Published in: PLoS Comput Biol, Issue 18, 2022, Page(s) e1010400, ISSN 1553-734X
Publisher: Public Library of Science
DOI: 10.1371/journal.pcbi.1010400

Theoretical tool bridging cell polarities with development of robust morphologies

Author(s): Silas Boye Nissen, Steven Rønhild, Ala Trusina, Kim Sneppen
Published in: elife, 2018, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.38407.001

Exploring the Link between Nucleosome Occupancy and DNA Methylation

Author(s): Cecilia Lövkvist, Kim Sneppen, Jan O. Haerter
Published in: Frontiers in Genetics, Issue 8, 2018, ISSN 1664-8021
Publisher: Frontiers Media
DOI: 10.3389/fgene.2017.00232

Deconstructing the principles of ductal network formation in the pancreas

Author(s): Svend Bertel Dahl-Jensen, Siham Yennek, Lydie Flasse, Hjalte List Larsen, Dror Sever, Gopal Karremore, Ivana Novak, Kim Sneppen, Anne Grapin-Botton
Published in: PLOS Biology, Issue 16/7, 2018, Page(s) e2002842, ISSN 1545-7885
Publisher: PLoS
DOI: 10.1371/journal.pbio.2002842

Exploring the contribution of exposure heterogeneity to the cessation of the 2014 Ebola epidemic

Author(s): Florian Uekermann, Lone Simonsen, Kim Sneppen
Published in: PLOS ONE, Issue 14/2, 2019, Page(s) e0210638, ISSN 1932-6203
Publisher: Public Library of Science
DOI: 10.1371/journal.pone.0210638

Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

Author(s): Julius B. Kirkegaard, Bjarke F. Nielsen, Ala Trusina, Kim Sneppen
Published in: Journal of The Royal Society Interface, Issue 16/159, 2019, Page(s) 20190517, ISSN 1742-5689
Publisher: The Royal Society
DOI: 10.1098/rsif.2019.0517

Regime Shifts in a Phage-Bacterium Ecosystem and Strategies for Its Control

Author(s): Sergei Maslov, Kim Sneppen
Published in: mSystems, Issue 4/6, 2019, ISSN 2379-5077
Publisher: American Society for Microbiology
DOI: 10.1128/msystems.00470-19

Theoretical analysis of Polycomb-Trithorax systems predicts that poised chromatin is bistable and not bivalent

Author(s): Kim Sneppen, Leonie Ringrose
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-10130-2

A growing microcolony can survive and support persistent propagation of virulent phages

Author(s): Rasmus Skytte Eriksen, Sine L. Svenningsen, Kim Sneppen, Namiko Mitarai
Published in: Proceedings of the National Academy of Sciences, Issue 115/2, 2018, Page(s) 337-342, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.1708954115

Sustainability of spatially distributed bacteria-phage systems

Author(s): Rasmus Skytte Eriksen, Namiko Mitarai, Kim Sneppen
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-59635-7

Chaos in disease outbreaks among prey

Author(s): Andreas Eilersen, Mogens H. Jensen, Kim Sneppen
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-60945-z

Model to Link Cell Shape and Polarity with Organogenesis

Author(s): Bjarke Frost Nielsen, Silas Boye Nissen, Kim Sneppen, Joachim Mathiesen, Ala Trusina
Published in: iScience, Issue 23/2, 2020, Page(s) 100830, ISSN 2589-0042
Publisher: cell press
DOI: 10.1016/j.isci.2020.100830

Enhanced DNA repair through droplet formation and p53 oscillations.

Author(s): Mathias S. Heltberg; Alessandra Lucchetti; Feng-Shu Hsieh; Duy Pham Minh Nguyen; Sheng-hong Chen; Mogens H. Jensen
Published in: Crossref, Issue 185, 2022, Page(s) 4394-4408.e10, ISSN 1097-4172
Publisher: Cell Press
DOI: 10.1016/j.cell.2022.10.004

Social contagion in a world with asymmetric influence

Author(s): G. S. Halvorsen; B. N. Pedersen; Kim Sneppen
Published in: Physical Review E, Issue 103, 2020, Page(s) 2, ISSN 1898-2395
Publisher: American Physical Society
DOI: 10.1103/physreve.103.022303

Nematic Defects from Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks

Author(s): Kirkegaard, Julius B.; Nielsen, Bjarke F.; Trusina, Ala; Sneppen, Kim
Published in: Journal of the Royal Society Interface, Issue 16, 2019, Page(s) 20190517, ISSN 1742-5662
Publisher: The Royal Society (United Kingdom)
DOI: 10.6084/m9.figshare.9970610.v1

The uneasy coexistence of predators and pathogens

Author(s): Eilersen, Andreas; Sneppen, Kim
Published in: Eilersen, K. Sneppen, 2020 , ' The uneasy coexistence of predators and pathogens ' , The European Physical Journal E: Soft Matter and Biological Physics , vol. 43 , no. 7 , 42 . https://doi.org/10.1140/epje/i2020-11966-7, Issue Eur. Phys. J. E 43, 2020, Page(s) 42, ISSN 1292-895X
Publisher: epj
DOI: 10.1101/721506

Emergence of networks of shared restriction-modification systems in phage–bacteria ecosystems

Author(s): Rasmus Skytte Eriksen; Nitish Malhotra; Aswin Sai Narain Seshasayee; Kim Sneppen; Sandeep Krishna
Published in: Crossref, Issue 47, 2022, Page(s) 38, ISSN 0973-7138
Publisher: springer
DOI: 10.1007/s12038-022-00274-7

Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development

Author(s): Xiaochan Xu, Philip Allan Seymour, Kim Sneppen, Ala Trusina, Anuska la Rosa Egeskov-Madsen, Mette Christine Jørgensen, Mogens Høgh Jensen, Palle Serup
Published in: Nature Communications, Issue 14, 2023, Page(s) 348, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-023-35963-w

Differences in social activity increase efficiency of contact tracing

Author(s): Bjarke Frost Nielsen, Kim Sneppen, Lone Simonsen, Joachim Mathiesen
Published in: Eur. Phys. J. B, Issue 94, 209, 2021, ISSN 1434-6028
Publisher: Springer Verlag
DOI: 10.1140/epjb/s10051-021-00222-8