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Atomic precision materials engineering

Publications

ab initio description of bonding for transmission electron microscopy.

Author(s): Jacob Madsen; Timothy J. Pennycook; Toma Susi
Published in: Ultramicroscopy, Issue 231, 2021, Page(s) 113253, ISSN 0304-3991
Publisher: Elsevier BV
DOI: 10.1016/j.ultramic.2021.113253

Tailoring Electronic and Magnetic Properties of Graphene by Phosphorus Doping

Author(s): Rostislav Langer; Piotr Błoński; Christoph Hofer; Petr Lazar; Kimmo Mustonen; Jannik C. Meyer; Toma Susi; Michal Otyepka
Published in: ACS Applied Materials and Interfaces, Issue 12, 2020, Page(s) 34074–34085, ISSN 1944-8244
Publisher: American Chemical Society
DOI: 10.1021/acsami.0c07564

Mechanism of Electron-Beam Manipulation of Single-Dopant Atoms in Silicon.

Author(s): Alexander Markevich; Bethany M. Hudak; Jacob Madsen; Jiaming Song; Paul C. Snijders; Andrew R. Lupini; Toma Susi
Published in: Journal of Physical Chemistry C, Issue 125 / 29, 2021, Page(s) 16041–16048, ISSN 1932-7447
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcc.1c03549

Indirect measurement of the carbon adatom migration barrier on graphene

Author(s): Andreas Postl; Pit Pascal Patrick Hilgert; Alexander Markevich; Jacob Madsen; Kimmo Mustonen; Jani Kotakoski; Toma Susi
Published in: Carbon, Issue 196, 2022, Page(s) 596-601, ISSN 0008-6223
Publisher: Pergamon Press Ltd.
DOI: 10.1016/j.carbon.2022.05.039

The abTEM code: transmission electron microscopy from first principles

Author(s): Jacob Madsen; Toma Susi
Published in: Open Research Europe, Issue 1, 2021, Page(s) 24, ISSN 2732-5121
Publisher: F1000 Research Limited on behalf of the European Commission
DOI: 10.12688/openreseurope.13015.1

Atomic-Level Structural Engineering of Graphene on a Mesoscopic Scale.

Author(s): Alberto Trentino; Jacob Madsen; Andreas Mittelberger; Clemens Mangler; Toma Susi; Kimmo Mustonen; Jani Kotakoski
Published in: Nano Letters, Issue 21 / 12, 2021, Page(s) 5179–5185, ISSN 1530-6984
Publisher: American Chemical Society
DOI: 10.1021/acs.nanolett.1c01214

Towards Exotic Layered Materials: 2D Cuprous Iodide

Author(s): Kimmo Mustonen; Christoph Hofer; Peter Kotrusz; Alexander Markevich; Martin Hulman; Clemens Mangler; Toma Susi; Timothy J. Pennycook; Karol Hricovini; Christine M. Richter; Jannik C. Meyer; Jani Kotakoski; Viera Skákalová
Published in: Advanced Materials, Issue 34 / 9, 2021, Page(s) 2106922, ISSN 1613-6810
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/adma.202106922

Two-step implantation of gold into graphene

Author(s): Alberto Trentino; Kenichiro Mizohata; Georg Zagler; Manuel Längle; Kimmo Mustonen; Toma Susi; Jani Kotakoski; E Harriet Åhlgren
Published in: 2D Materials, Issue 9, 2022, Page(s) 025011, ISSN 2053-1583
Publisher: IOP Publishing
DOI: 10.1088/2053-1583/ac4e9c

Step-By-Step Atomic Insights into Structural Reordering from 2D to 3D MoS2

Author(s): Heena Inani; Dong Hoon Shin; Jacob Madsen; Hyun Jeong Jeong; Min Hee Kwon; Niall McEvoy; Toma Susi; Clemens Mangler; Sangwook Lee; Kimmo Mustonen; Jani Kotakoski
Published in: Advanced Functional Materials, Issue 31 / 13, 2021, Page(s) 2008395, ISSN 1613-6810
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/adfm.202008395

Beam-driven Dynamics of Aluminium Dopants in Graphene.

Author(s): Georg Zagler; Maximilian Stecher; Alberto Trentino; Fabian Kraft; Cong Su; Andreas Postl; Manuel Längle; Christian Pesenhofer; Clemens Mangler; E Harriet Åhlgren; Alexander Markevich; Alex Zettl; Jani Kotakoski; Toma Susi; Kimmo Mustonen
Published in: 2D Materials, Issue 9, 2022, Page(s) 035009, ISSN 2053-1583
Publisher: IOP Publishing
DOI: 10.1088/2053-1583/ac6c30

Deep learning for electron and scanning probe microscopy: From materials design to atomic fabrication

Author(s): Sergei V. Kalinin; Maxim Ziatdinov; Steven R. Spurgeon; Colin Ophus; Eric A. Stach; Toma Susi; Josh Agar; John Randall
Published in: MRS Bulletin, Issue 47, 2022, Page(s) 931-939, ISSN 0883-7694
Publisher: Materials Research Society
DOI: 10.1557/s43577-022-00413-3

Graphene Lattices with Embedded Transition-Metal Atoms and Tunable Magnetic Anisotropy Energy: Implications for Spintronic Devices

Author(s): Rostislav Langer; Kimmo Mustonen; Alexander Markevich; Michal Otyepka; Toma Susi; Piotr Błoński
Published in: 2574-0970, Issue 5, 2022, Page(s) 1562–1573, ISSN 2574-0970
Publisher: American Chemical Society
DOI: 10.1021/acsanm.1c04309

Electron-Beam Manipulation of Silicon Dopants in Graphene

Author(s): Mukesh Tripathi, Andreas Mittelberger, Nicholas A. Pike, Clemens Mangler, Jannik C. Meyer, Matthieu J. Verstraete, Jani Kotakoski, Toma Susi
Published in: Nano Letters, Issue 18/8, 2018, Page(s) 5319-5323, ISSN 1530-6984
Publisher: American Chemical Society
DOI: 10.1021/acs.nanolett.8b02406

Efficient first principles simulation of electron scattering factors for transmission electron microscopy

Author(s): Toma Susi, Jacob Madsen, Ursula Ludacka, Jens Jørgen Mortensen, Timothy J. Pennycook, Zhongbo Lee, Jani Kotakoski, Ute Kaiser, Jannik C. Meyer
Published in: Ultramicroscopy, Issue 197, 2019, Page(s) 16-22, ISSN 0304-3991
Publisher: Elsevier BV
DOI: 10.1016/j.ultramic.2018.11.002

Atomic-Scale Deformations at the Interface of a Mixed-Dimensional van der Waals Heterostructure

Author(s): Kimmo Mustonen, Aqeel Hussain, Christoph Hofer, Mohammad R. A. Monazam, Rasim Mirzayev, Kenan Elibol, Patrik Laiho, Clemens Mangler, Hua Jiang, Toma Susi, Esko I. Kauppinen, Jani Kotakoski, Jannik C. Meyer
Published in: ACS Nano, Issue 12/8, 2018, Page(s) 8512-8519, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.8b04050

Atomic-Scale in Situ Observations of Crystallization and Restructuring Processes in Two-Dimensional MoS 2 Films

Author(s): Bernhard C. Bayer, Reinhard Kaindl, Mohammad Reza Ahmadpour Monazam, Toma Susi, Jani Kotakoski, Tushar Gupta, Dominik Eder, Wolfgang Waldhauser, Jannik C. Meyer
Published in: ACS Nano, Issue 12/8, 2018, Page(s) 8758-8769, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.8b04945

Silicon Substitution in Nanotubes and Graphene via Intermittent Vacancies

Author(s): Heena Inani, Kimmo Mustonen, Alexander Markevich, Er-Xiong Ding, Mukesh Tripathi, Aqeel Hussain, Clemens Mangler, Esko I. Kauppinen, Toma Susi, Jani Kotakoski
Published in: The Journal of Physical Chemistry C, Issue 123 (20), 2019, Page(s) 13136-13140, ISSN 1932-7447
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcc.9b01894

Electron‐Beam Manipulation of Silicon Impurities in Single‐Walled Carbon Nanotubes

Author(s): Kimmo Mustonen, Alexander Markevich, Mukesh Tripathi, Heena Inani, Er‐Xiong Ding, Aqeel Hussain, Clemens Mangler, Esko I. Kauppinen, Jani Kotakoski, Toma Susi
Published in: Advanced Functional Materials, Issue 29/52, 2019, Page(s) 1901327, ISSN 1616-301X
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/adfm.201901327

Intrinsic core level photoemission of suspended monolayer graphene

Author(s): Toma Susi, Mattia Scardamaglia, Kimmo Mustonen, Mukesh Tripathi, Andreas Mittelberger, Mohamed Al-Hada, Matteo Amati, Hikmet Sezen, Patrick Zeller, Ask H. Larsen, Clemens Mangler, Jannik C. Meyer, Luca Gregoratti, Carla Bittencourt, Jani Kotakoski
Published in: Physical Review Materials, Issue 2/7, 2018, Page(s) 074005, ISSN 2475-9953
Publisher: American Physical Society
DOI: 10.1103/PhysRevMaterials.2.074005

Influence of temperature on the displacement threshold energy in graphene

Author(s): Alexandru Ionut Chirita Mihaila, Toma Susi, Jani Kotakoski
Published in: Scientific Reports, Issue 9/1, 2019, Page(s) 12981, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-49565-4

Zigzag sp 2 Carbon Chains Passing through an sp 3 Framework: A Driving Force toward Room-Temperature Ferromagnetic Graphene

Author(s): Jiří Tuček, Kateřina Holá, Giorgio Zoppellaro, Piotr Błoński, Rostislav Langer, Miroslav Medved’, Toma Susi, Michal Otyepka, Radek Zbořil
Published in: ACS Nano, Issue 12/12, 2018, Page(s) 12847-12859, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.8b08052

Engineering single-atom dynamics with electron irradiation

Author(s): Cong Su, Mukesh Tripathi, Qing-Bo Yan, Zegao Wang, Zihan Zhang, Christoph Hofer, Haozhe Wang, Leonardo Basile, Gang Su, Mingdong Dong, Jannik C. Meyer, Jani Kotakoski, Jing Kong, Juan-Carlos Idrobo, Toma Susi, Ju Li
Published in: Science Advances, Issue 5/5, 2019, Page(s) eaav2252, ISSN 2375-2548
Publisher: American Association for the Advancement of Science
DOI: 10.1126/sciadv.aav2252

Direct imaging of light-element impurities in graphene reveals triple-coordinated oxygen

Author(s): Christoph Hofer, Viera Skákalová, Tobias Görlich, Mukesh Tripathi, Andreas Mittelberger, Clemens Mangler, Mohammad Reza Ahmadpour Monazam, Toma Susi, Jani Kotakoski, Jannik C. Meyer
Published in: Nature Communications, Issue 10/1, 2019, Page(s) 4570, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-12537-3

Microwave Energy Drives “On–Off–On” Spin‐Switch Behavior in Nitrogen‐Doped Graphene

Author(s): Giorgio Zoppellaro, Aristides Bakandritsos, Jiří Tuček, Piotr Błoński, Toma Susi, Petr Lazar, Zdeněk Bad'ura, Tomáš Steklý, Ariana Opletalová, Michal Otyepka, Radek Zbořil
Published in: Advanced Materials, Issue 31/37, 2019, Page(s) 1902587, ISSN 0935-9648
Publisher: United Nations Industrial Developement Organization
DOI: 10.1002/adma.201902587

Quantifying transmission electron microscopy irradiation effects using two-dimensional materials

Author(s): Toma Susi, Jannik C. Meyer, Jani Kotakoski
Published in: Nature Reviews Physics, Issue 1/6, 2019, Page(s) 397-405, ISSN 2522-5820
Publisher: Springer Nature
DOI: 10.1038/s42254-019-0058-y

Identifying and manipulating single atoms with scanning transmission electron microscopy

Author(s): Toma Susi
Published in: Chemical Communications, Issue 58, 2022, Page(s) 12274-12285, ISSN 1359-7345
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2cc04807h

Chemistry at graphene edges in the electron microscope

Author(s): Gregor T. Leuthner; Toma Susi; Clemens Mangler; Jannik C. Meyer; Jani Kotakoski
Published in: 2D Materials, Issue 8, 2021, Page(s) 035023, ISSN 2053-1583
Publisher: Institute of Physics Publishing
DOI: 10.1088/2053-1583/abf624

Accurate computational prediction of core-electron binding energies in carbon-based materials: A machine-learning model combining density-functional theory and $\boldsymbol{GW}$

Author(s): Dorothea Golze; Markus Hirvensalo; Patricia Hernández-León; Anja Aarva; Jarkko Etula; Toma Susi; Patrick Rinke; Tomi Laurila; Miguel A. Caro
Published in: Chemistry of Materials, Issue 34, 2022, Page(s) 6240–6254, ISSN 0897-4756
Publisher: American Chemical Society
DOI: 10.1021/acs.chemmater.1c04279

Interferometric 4D-STEM for Lattice Distortion and Interlayer Spacing Measurements in Bilayer and Trilayer Two-dimensional Materials

Author(s): Zachman, Michael J; Madsen, Jacob; Zhang, Xiang; Ajayan, Pulickel M; Susi, Toma; Chi, Miaofang
Published in: Small, Issue 17 / 28, 2021, Page(s) 2170142, ISSN 1613-6810
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/smll.202170142

Single Indium Atoms and Few-Atom Indium Clusters Anchored onto Graphene via Silicon Heteroatoms.

Author(s): Kenan Elibol; Kenan Elibol; Clemens Mangler; David D. O'Regan; Kimmo Mustonen; Dominik Eder; Jannik C. Meyer; Jannik C. Meyer; Jani Kotakoski; Richard G. Hobbs; Toma Susi; Bernhard C. Bayer; Bernhard C. Bayer
Published in: ACS Nano, Issue 15 / 9, 2021, Page(s) 14373–14383, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.1c03535

Three-dimensional <i>ab initio</i> description of vibration-assisted electron knock-on displacements in graphene

Author(s): Alexandru Chirita; Alexander Markevich; Mukesh Tripathi; Nicholas A. Pike; Matthieu J. Verstraete; Jani Kotakoski; Toma Susi
Published in: Physical Review B, Issue 105, 2022, Page(s) 235419, ISSN 2469-9950
Publisher: American Physical Society
DOI: 10.1103/physrevb.105.235419

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