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Structural and Functional Architectures of Multi-Kingdom Microbial Consortia Colonizing Plant Roots


Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations

Author(s): Paloma Durán, Thomas James Ellis, Thorsten Thiergart, Jon Ågren, Stéphane Hacquard
Published in: New Phytologist, Issue 0028646X, 2022, Page(s) 608-621, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.18357

Microbial Systems Ecology to Understand Cross-Feeding in Microbiomes

Author(s): Victor Mataigne, Nathan Vannier, Philippe Vandenkoornhuyse and Stéphane Hacquard
Published in: Frontiers in Microbiology, Issue 12, 2021, Page(s) 780469, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2021.780469

Multi-genome metabolic modeling predicts functional inter-dependencies in the Arabidopsis root microbiome

Author(s): Victor Mataigne, Nathan Vannier, Philippe Vandenkoornhuyse, Stéphane Hacquard
Published in: Microbiome, Issue 217, 2022, ISSN 2049-2618
Publisher: Springer Nature
DOI: 10.1186/s40168-022-01383-z

Cofunctioning of bacterial exometabolites drives root microbiota establishment

Author(s): Felix Getzke, M. Amine Hassani, Max Crüsemann, Milena Malisic, Pengfan Zhang, Yuji Ishigaki, Nils Böhringer, Alicia Jiménez Fernández, Lei Wang, Jana Ordon, Ka-Wai Ma, Thorsten Thiergart, Christopher J. Harbort, Hidde Wesseler, Shingo Miyauchi, Ruben Garrido-Oter, Ken Shirasu, Till F. Schäberle, Stéphane Hacquard, and Paul Schulze-Lefert
Published in: PNAS, Issue 120, 2023, Page(s) 2221508120, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2221508120

Genetic determinants of endophytism in the Arabidopsis root mycobiome

Author(s): Fantin Mesny, Shingo Miyauchi, Thorsten Thiergart, Brigitte Pickel, Lea Atanasova, Magnus Karlsson, Bruno Hüttel, Kerrie W Barry, Sajeet Haridas, Cindy Chen, Diane Bauer, William Andreopoulos, Jasmyn Pangilinan, Kurt LaButti, Robert Riley, Anna Lipzen, Alicia Clum, Elodie Drula, Bernard Henrissat, Annegret Kohler, Igor V Grigoriev, Francis M Martin, Stéphane Hacquard
Published in: Nature Communications, Issue 12/1, 2021, Page(s) 7227, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-27479-y

Microbiota-root-shoot-environment axis and stress tolerance in plants

Author(s): Shiji Hou, Katarzyna W Wolinska, Stéphane Hacquard
Published in: Current Opinion in Plant Biology, Issue 62, 2021, ISSN 1369-5266
Publisher: Elsevier BV
DOI: 10.1016/j.pbi.2021.102028

A microbiota–root–shoot circuit favours Arabidopsis growth over defence under suboptimal light

Author(s): Shiji Hou, Thorsten Thiergart, Nathan Vannier, Fantin Mesny, Jörg Ziegler, Brigitte Pickel, Stéphane Hacquard
Published in: Nature Plants, Issue 7/8, 2021, Page(s) 1078–1092, ISSN 2055-0278
Publisher: Springer Nature
DOI: 10.1038/s41477-021-00956-4

Microbial interactions within the plant holobiont

Author(s): M. Amine Hassani, Paloma Durán, Stéphane Hacquard
Published in: Microbiome, Issue 6/1, 2018, ISSN 2049-2618
Publisher: microbiomejournal
DOI: 10.1186/s40168-018-0445-0

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

Author(s): Paloma Durán, Thorsten Thiergart, Ruben Garrido-Oter, Matthew Agler, Eric Kemen, Paul Schulze-Lefert, Stéphane Hacquard
Published in: Cell, Issue 175/4, 2018, Page(s) 973-983.e14, ISSN 0092-8674
Publisher: Cell Press
DOI: 10.1016/j.cell.2018.10.020

Bacterial–fungal interactions: ecology, mechanisms and challenges

Author(s): Aurélie Deveau, Gregory Bonito, Jessie Uehling, Mathieu Paoletti, Matthias Becker, Saskia Bindschedler, Stéphane Hacquard, Vincent Hervé, Jessy Labbé, Olga A Lastovetsky, Sophie Mieszkin, Larry J Millet, Balázs Vajna, Pilar Junier, Paola Bonfante, Bastiaan P Krom, Stefan Olsson, Jan Dirk van Elsas, Lukas Y Wick
Published in: FEMS Microbiology Reviews, Issue 42/3, 2018, Page(s) 335-352, ISSN 1574-6976
Publisher: FEMS Microbiology Review
DOI: 10.1093/femsre/fuy008

Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

Author(s): Thorsten Thiergart, Paloma Durán, Thomas Ellis, Nathan Vannier, Ruben Garrido-Oter, Eric Kemen, Fabrice Roux, Carlos Alonso-Blanco, Jon Ågren, Paul Schulze-Lefert, Stéphane Hacquard
Published in: Nature Ecology & Evolution, Issue 4/1, 2020, Page(s) 122-131, ISSN 2397-334X
Publisher: Springer
DOI: 10.1038/s41559-019-1063-3

Contribution of bacterial-fungal balance to plant and animal health

Author(s): Felix Getzke, Thorsten Thiergart, Stéphane Hacquard
Published in: Current Opinion in Microbiology, Issue 49, 2019, Page(s) 66-72, ISSN 1369-5274
Publisher: Elsevier BV
DOI: 10.1016/j.mib.2019.10.009

Microbiota-mediated disease resistance in plants

Author(s): Nathan Vannier, Matthew Agler, Stéphane Hacquard
Published in: PLOS Pathogens, Issue 15/6, 2019, Page(s) e1007740, ISSN 1553-7374
Publisher: Public Library of Science
DOI: 10.1371/journal.ppat.1007740

Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots

Author(s): Katarzyna W Wolinska, Nathan Vannier, Thorsten Thiergart, Brigitte Pickel, Sjoerd Gremmen, Anna Piasecka, Mariola Piślewska-Bednarek , Ryohei Thomas Nakano, Youssef Belkhadir, Paweł Bednarek, Stéphane Hacquard
Published in: PNAS, Issue 118/49, 2021, Page(s) e2111521118, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2111521118

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