Deliverables
1. Mechanistic models of GCR in BCN/RA
Publications and Open Source software regarding mechanistic B/T cell-based models of GCR in BCN/RA. (M24 and M42) Publication and Open Source software regarding mechanistic molecular network GCR models (M24, M42)
PhD theses and training certificatesPhD theses for 13 ESRsThe Redoxis ESR will not engage in a PhD programmeESR training certificates
1. Dissemination reportsDissemination reports (M24,38,48) This will include information about: -Science Cafes, patient seminars -Education secondary school completed -8 COSMIC Newsletters -Data, software, education material available -(White) paper best practices systems medicine
(White) paper systems medicine trainingBased on experiences with systems medicine training in COSMIC the consortium will write a white paper systems medicine training discussion directions for the future
3. Dissemination reportsDissemination reports M243857This will include information aboutScience Cafes patient seminarsEducation secondary school completed8 COSMIC NewslettersData software education material availableWhite paper best practices systems medicine
2. Dissemination reportsDissemination reports M243848This will include information aboutScience Cafes patient seminarsEducation secondary school completed8 COSMIC NewslettersData software education material availableWhite paper best practices systems medicine
1. Quantitative/single cell/molecular data of the GCR
Publications and Open Access data regarding. Quantitative and temporal data of the normal GCR. (M24) Publications and Open Access data regarding (Single cell) molecular signatures (transcriptomics, ChipSeq, ATACseq). (M24, M42)
COSMIC international conference2. Network workshops, e-learning
The ESRs participate in COSMIC workshops elearning activities local training activities etc Training takes place from M9 to M36ESR can receive prizes from COSMIC for their work M31 M553 annual prizes best publication presentation collaboration 250 euro eachBest expose for layman
Vacancies, Recruitment, Declarations on conformityAdvertise positions; Recruit ESRs. Declarations on conformity.
Supervisory board of COSMICSupervisory Board of COSMIC installed
Publications
Author(s):
Elena Merino Tejero, Danial Lashgari, Rodrigo García-Valiente, Jiaojiao He, Philippe A. Robert, Michael Meyer-Hermann, Jeroen E. J. Guikema, Huub Hoefsloot, Antoine H. C. van Kampen
Published in:
Frontiers in Immunology, Issue 12, 2021, ISSN 1664-3224
Publisher:
Frontiers Media SA
DOI:
10.3389/fimmu.2021.716240
Author(s):
Dornatien C. Anang; Giulia Balzaretti; Antoine van Kampen; Niek de Vries; Paul L. Klarenbeek
Published in:
International Journal of Molecular Sciences, Issue 14220067, 2021, ISSN 1422-0067
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/ijms221910514
Author(s):
Theinmozhi Arulraj, Sebastian C. Binder and Michael Meyer-Hermann
Published in:
Frontiers in Immunology, 2022, ISSN 1664-3224
Publisher:
Lausanne: Frontiers Media S.A.
DOI:
10.3389/fimmu.2022.922318
Author(s):
Theinmozhi Arulraj; Sebastian C. Binder; Philippe A. Robert; Philippe A. Robert; Michael Meyer-Hermann; Michael Meyer-Hermann
Published in:
Frontiers in Immunology, Issue 4, 2021, ISSN 1664-3224
Publisher:
Frontiers Media S.A.
DOI:
10.3389/fimmu.2021.705240
Author(s):
Rinako Nakagawa, Amparo Toboso-Navasa, Marta Schips, George Young, Leena Bhaw-Rosun, Miriam Llorian-Sopena, Probir Chakravarty, Abdul Karim Sesay, George Kassiotis, Michael Meyer-Hermann, Dinis Pedro Calado
Published in:
Proceedings of the National Academy of Sciences, Issue 118/2, 2021, Page(s) e2016425118, ISSN 0027-8424
Publisher:
National Academy of Sciences
DOI:
10.1073/pnas.2016425118
Author(s):
Galigalidou C, Zaragoza-Infante L, Iatrou A, Chatzidimitriou A, Stamatopoulos K, Agathangelidis A.
Published in:
Frontiers in Oncology, Issue 11:769612, 2021, ISSN 2234-943X
Publisher:
Frontiers Media S. A.
DOI:
10.3389/fonc.2021.769612
Author(s):
Andreas Dräger; Tomáš Helikar; Matteo Barberis; Matteo Barberis; Marc R. Birtwistle; Laurence Calzone; Claudine Chaouiya; Claudine Chaouiya; Jan Hasenauer; Jonathan R. Karr; Anna Niarakis; Anna Niarakis; María Rodríguez Martínez; Julio Saez-Rodriguez; Juilee Thakar
Published in:
Bioinformatics, Issue 10, 2020, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btab229
Author(s):
Aurélien Pélissier, Youcef Akrout, Katharina Jahn , Jack Kuipers , Ulf Klein , Niko Beerenwinkel, María Rodríguez Martínez
Published in:
Cells, Issue 9/6, 2020, Page(s) 1448, ISSN 2073-4409
Publisher:
MDPI
DOI:
10.3390/cells9061448
Author(s):
Valentin Junet, Judith Farrés, José M Mas, Xavier Daura
Published in:
Bioinformatics, 2021, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btab105
Author(s):
Katerina Gemenetzi, Andreas Agathangelidis, Laura Zaragoza-Infante, Electra Sofou, Maria Papaioannou, Anastasia Chatzidimitriou, Kostas Stamatopoulos
Published in:
Frontiers in Oncology, Issue 10, 2020, ISSN 2234-943X
Publisher:
Frontiers Media S. A.
DOI:
10.3389/fonc.2020.00067
Author(s):
Theinmozhi Arulraj, Sebastian C. Binder, Philippe A. Robert, Michael Meyer-Hermann
Published in:
Frontiers in Immunology, Issue 10, 2019, ISSN 1664-3224
Publisher:
Frontiers Media SA
DOI:
10.3389/fimmu.2019.02116
Author(s):
Guillem Jorba, Joaquim Aguirre-Plans, Valentin Junet, Cristina Segú-Vergés, José Luis Ruiz, Albert Pujol, Narcís Fernández-Fuentes, José Manuel Mas, Baldo Oliva
Published in:
PLOS ONE, Issue 15/2, 2020, Page(s) e0228926, ISSN 1932-6203
Publisher:
Public Library of Science
DOI:
10.1371/journal.pone.0228926
Author(s):
Elena Merino Tejero, Qirong Mao, Danial Lashgari, Rodrigo García-Valiente, Philippe A. Robert, Michael Meyer-Hermann, María Rodríguez Martínez, Jeroen E. J. Guikema, Huub H. C. Hoefsloot and Antoine H. C. van Kampen
Published in:
Frontiers in Systems Biology, Issue 2, 2022, ISSN 2674-0702
Publisher:
Frontiers SA
DOI:
10.3389/fsysb.2022.864690
Author(s):
Theinmozhi Arulraj, Sebastian C. Binder, Michael Meyer-Hermann
Published in:
The Journal of Immunology, Issue 206/7, 2021, Page(s) 1436-1442, ISSN 0022-1767
Publisher:
American Association of Immunologists
DOI:
10.4049/jimmunol.2001355
Author(s):
Merino Tejero, E., D. Lashgari, R. Garcia-Valiente, X. Gao, F. Crauste, P. A. Robert, M. Meyer-Hermann, M. R. Martinez, S. M. van Ham, J. E. J. Guikema, H. Hoefsloot, and A. H. C. van Kampen
Published in:
Frontiers in Immunology, Issue 11, 2022, Page(s) 620716., ISSN 1664-3224
Publisher:
Frontiers Media SA
DOI:
10.3389/fimmu.2020.620716
Author(s):
Laura Zaragoza-Infante, Andreas Agathangelidis, Maria Papaioannou, Anastasia Chatzidimitriou, Kostas Stamatopoulos
Published in:
Annals of Lymphoma, Issue 4, 2020, Page(s) 10-10, ISSN 2616-2695
Publisher:
AME Publishing Company
DOI:
10.21037/aol-20-18
Author(s):
José Ramón Gutiérrez-Casares, Javier Quintero, Guillem Jorba, Valentin Junet, Vicente Martínez, Tamara Pozo-Rubio, Baldomero Oliva, Xavier Daura, José Manuel Mas, Carmen Montoto
Published in:
Frontiers in Psychiatry, Issue 12, 2021, ISSN 1664-0640
Publisher:
Frontiers Research Foundation
DOI:
10.3389/fpsyt.2021.741170
Author(s):
Anang DC, Ramwadhdoebe TH, Hähnlein JS, van Kuijk B, Smits N, van Lienden KP, Maas M, Gerlag DM, Tak PP, de Vries N, van Baarsen LGM.
Published in:
Cells., Issue 11(7), 2022, Page(s) 1104, ISSN 2073-4409
Publisher:
MDPI
DOI:
10.3390/cells11071104
Author(s):
Juhee Pae, Jonatan Ersching, Tiago B.R. Castro, Marta Schips, Luka Mesin, Samuel J. Allon, Jose Ordovas-Montanes, Coraline Mlynarczyk, Ari Melnick, Alejo Efeyan, Alex K. Shalek, Michael Meyer-Hermann, Gabriel D. Victora
Published in:
Journal of Experimental Medicine, Issue 218/4, 2021, ISSN 0022-1007
Publisher:
Rockefeller University Press
DOI:
10.1084/jem.20201699
Author(s):
Philippe A. Robert, Theinmozhi Arulraj, Michael Meyer-Hermann
Published in:
iScience, Issue 24/9, 2021, Page(s) 102979, ISSN 2589-0042
Publisher:
Elsevier
DOI:
10.1016/j.isci.2021.102979
Author(s):
Danial Lashgari; Elena Merino Tejero; Michael Meyer-Hermann; Mathieu A. F. Claireaux; Marit J. van Gils; Huub C. J. Hoefsloot; Antoine H. C. van Kampen
Published in:
PLoS computational biology, Issue 18;6, 2022, Page(s) 5, ISSN 1553-734X
Publisher:
Public Library of Science
DOI:
10.1371/journal.pcbi.1010168
Author(s):
Laura Zaragoza-Infante, Valentin Junet, Nikos Pechlivanis, Styliani-Christina Fragkouli, Serovpe Amprachamian, Triantafyllia Koletsa, Anastasia Chatzidimitriou, Maria Papaioannou, Kostas Stamatopoulos, Andreas Agathangelidis, Fotis Psomopoulos
Published in:
Briefings in Bioinformatics, bbac349,, 2022, ISSN 1467-5463
Publisher:
Oxford University Press
DOI:
10.1093/bib/bbac349
Author(s):
Theinmozhi Arulraj, Sebastian C Binder, Michael Meyer-Hermann
Published in:
Cells, Issue 10(7):1736, 2021, ISSN 2073-4409
Publisher:
MDPI
DOI:
10.3390/cells10071736
Author(s):
Junet, Valentin; Daura, Xavier
Published in:
Bioinformatics, Issue 7, 2021, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btab687
Author(s):
Sahamoddin Khailaie, Tanmay Mitra, Arnab Bandyopadhyay, Marta Schips, Pietro Mascheroni, Patrizio Vanella, Berit Lange, Sebastian C. Binder, Michael Meyer-Hermann
Published in:
BMC Medicine, Issue 19/1, 2021, ISSN 1741-7015
Publisher:
BioMed Central
DOI:
10.1186/s12916-020-01884-4
Author(s):
Jorba, Guillem; Aguirre-Plans, Joaquim; Junet, Valentin; Segú-Vergés, Cristina; Ruiz, José Luis; Pujol, Albert; Fernandez-Fuentes, Narcis; Mas, José Manuel; Oliva, Baldo
Published in:
bioRxiv, Issue 1, 2019
Publisher:
Cold Spring Harbor
DOI:
10.1101/625889
Author(s):
Mahnoush Bahjat; Maria Stratigopoulou; Bas Pilzecker; Tijmen P. van Dam; Simon Mobach; Richard J. Bende; Carel J.M. van Noesel; Heinz Jacobs; Jeroen E.J. Guikema
Published in:
bioXrive, Issue 1, 2020
Publisher:
Cold Spring Harbor Laboratory
DOI:
10.1101/2020.01.30.926964
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