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Visual Exploration and Sampling Toolkit for Extreme Computing

Deliverables

System Architecture Requirements

Report on system architecture requirements from VESTEC use-cases and sensor data.

Mosquito Diseases Model

Report on Mosquitoborne diseases model and on the spatiotemporal risks of mosquitoborne diseases Storyboard for use case execution

Topological Proxies

Software library and documentation for the in-situ computation of topological proxies

Updated Design Document

Updated design document of the VESTEC system architecture after user feedback

Initial Design Document

Initial design document of the VESTEC system architecture.

Use Case 2 Evaluation

Report on the mosquito and infection control model and the evaluation of control measures

System Tuning Plan

This report will describe the current state of overall system performance the status of any system improvements made since M24 and a final roadmap for system improvements

Forest Fire Simulation Specification

Report about forest fire simulation system specifications. Storyboard for use case execution.

Data Sampling

Software library and documentation for the insitu topologydriven data sampling of raw simulation data

System Performance

This final report will describe the final status of the VESTEC system control and data assimilation software and will discuss final performance analysis results

Dissemination Report 1

This deliverable will present VESTEC dissemination, standardization, and collaboration activities, and it will include an update of the dissemination plan.

Dissemination Report 3

This deliverable will present VESTEC dissemination standardization and collaboration activities and it will include an update of the dissemination plan

Use Case 1 Evaluation

Report about forest fire simulation system implementation and the evaluation results of the use case 2 execution

Dissemination Report 2

This deliverable will present VESTEC dissemination standardization and collaboration activities and it will include an update of the dissemination plan

Final Exploitation and Innovation Report

Final report describing the approaches for RTD results exploitation performed so far and planned for the future including a clear strategy for innovations

Space Weather Model

Report on space weather model Storyboard for use case execution

Rendering of Geometrical Features

Software library and documentation for the insitu rendering of combined volumetric and geometrical features

Distances between Topological Proxies

Software library and documentation for the insitu estimation of distances between topological proxies

Spatial Mosquito Abundance Model

Report on Spatial mosquito abundance model

System Integration and Performance

This report will describe the approach to overall VESTEC integration testing the status and performance of VESTEC system testing to date and a roadmap for anticipated future developments at system level

Initial Exploitation and Innovation Plan

First report about potential approaches to exploit the foreseen RTD results and the innovation strategy.

Best-Practice Report

Bestpractices in sensor data integration in applications for prediction

Dissemination Plan

This deliverable describes the dissemination plan including target audiences and activities

Use Case 3 Evaluation

Report on the implemented models and results of the space weather forecasting use case execution

Proceedings of the Final Workshop

Presentations training material slides etc of the final workshop will be collected in proceedings

User Interfaces 2

Software application with graphical user interfaces for the execution of use case 2

Explorative Visualization

Software application and report on explorative visualization of the sampled dataset

Sensor Data Assimilation

This report will describe the implementation and use of the VESTEC sensor data assimilation software. It will include a roadmap for any anticipated future developments.

Video Streams

Software library and report on remote insitu rendering of massive data

Forest Fire Simulation System

Software deliverable of the fire simulation system

Clustering of Topological Proxies

Software library and documentation for the insitu statistical clustering of topological proxies

User Interfaces 1

Software application with graphical user interfaces for the execution of use case 1

Topological Visualization

Software application and report about the visualization of topological data extracted

System Control

This software report will describe the implementation and use of the overall VESTEC system control software It will include a roadmap for any anticipated future developments

Heterogenous Visualization

Software application and report on heterogeneous data visualization for the use cases.

User Interfaces 3

Software application with graphical user interfaces for the execution of use case 3

Data Management Plan

Description of kind of datasets to be generated and how to provide and exploit them.

Project Website

Project website and project logo will be established to show the work of the project. It will focus on giving a clear message of the project’s achievements and act as a repository of information on VESTEC.

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Publications

Statistical Parameter Selection for Clustering Persistence Diagrams

Author(s): Max Kontak, Jules Vidal, Julien Tierny
Published in: 2019 IEEE/ACM HPC for Urgent Decision Making (UrgentHPC), 2019, Page(s) 7-12, ISBN 978-1-7281-5995-9
Publisher: IEEE
DOI: 10.1109/UrgentHPC49580.2019.00007

The Technologies Required for Fusing HPC and Real-Time Data to Support Urgent Computing

Author(s): Gordon Gibb, Rupert Nash, Nick Brown, Bianca Prodan
Published in: 2019 IEEE/ACM HPC for Urgent Decision Making (UrgentHPC), 2019, Page(s) 24-34, ISBN 978-1-7281-5995-9
Publisher: IEEE
DOI: 10.1109/urgenthpc49580.2019.00009

Topological Analysis of High Velocity Turbulent Flow

Author(s): Thibault Bridel-Bertomeu, Benjamin Fovet, Julien Tierny, Fabien Vivodtzev
Published in: 2019 IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV), 2019, Page(s) 87-88, ISBN 978-1-7281-2605-0
Publisher: IEEE
DOI: 10.1109/ldav48142.2019.8944351

An Overview of the Topology ToolKit

Author(s): Bin Masood, Talha; Budin, Joseph; Falk, Martin; Favelier, Guillaume; Garth, Christoph; Gueunet, Charles; Guillou, Pierre; Hofmann, Lutz; Hristov, Petar; Kamakshidasan, Adhitya; Kappe, Christopher; Klacansky, Pavol; Laurin, Patrick; Levine, Joshua,; Lukasczyk, Jonas; Sakurai, Daisuke; Soler, Maxime; Steneteg, Peter; Tierny, Julien; Usher, Will; Vidal, Jules; Wozniak, Michal
Published in: 8th Workshop on Topological Methods in Visualization (TopoInVis 2019), June 16-19, Nykoping, Sweden, 4, 2019
Publisher: In-Press

Task-based Augmented Reeb Graphs with Dynamic ST-Trees

Author(s): Gueunet, Charles; Fortin, Pierre; Jomier, Julien; Tierny, Julien
Published in: Eurographics Symposium on Parallel Graphics and Visualization, Jun 2019, Porto, Portugal, 3, 2019, ISBN 978-3-03868-079-6
Publisher: The Eurographics Association
DOI: 10.2312/pgv.20191107

Ranking Viscous Finger Simulations to an Acquired Ground Truth with Topology-Aware Matchings

Author(s): Maxime Soler, Martin Petitfrere, Gilles Darche, Melanie Plainchault, Bruno Conche, Julien Tierny
Published in: 2019 IEEE 9th Symposium on Large Data Analysis and Visualization (LDAV), 2019, Page(s) 62-72, ISBN 978-1-7281-2605-0
Publisher: IEEE
DOI: 10.1109/ldav48142.2019.8944365

Stochastic decision trigger modelling to assess the probability of wildland fire impact

Author(s): J. Ramirez, S. Monedero, C.A. Silva, A. Cardil
Published in: Science of The Total Environment, 694, 2019, Page(s) 133505, ISSN 0048-9697
Publisher: Elsevier BV
DOI: 10.1016/j.scitotenv.2019.07.311

Progressive Wasserstein Barycenters of Persistence Diagrams

Author(s): Jules Vidal, Joseph Budin, Julien Tierny
Published in: IEEE Transactions on Visualization and Computer Graphics, 2020, Page(s) 1-1, ISSN 1077-2626
Publisher: Institute of Electrical and Electronics Engineers
DOI: 10.1109/TVCG.2019.2934256

A Topological Data Analysis perspective on noncovalent interactions in relativistic calculations

Author(s): Małgorzata Olejniczak, André Severo Pereira Gomes, Julien Tierny
Published in: International Journal of Quantum Chemistry, 120/8, 2019, ISSN 0020-7608
Publisher: John Wiley & Sons Inc.
DOI: 10.1002/qua.26133

Spatial modes for transmission of chikungunya virus during a large chikungunya outbreak in Italy: a modeling analysis

Author(s): Guzzetta G, Vairo F, Mammone A, Lanini S, Poletti P, Manica M, Rosa R, Caputo B, Solimini A, Torre AD, Scognamiglio P.
Published in: BMC medicine, (2020) 18:226, 2020, Page(s) 0-1, ISSN 1741-7015
Publisher: BioMed Central
DOI: 10.1186/s12916-020-01674-y

The Role of Interactive Super-Computing in Using HPC for Urgent Decision Making

Author(s): Nick Brown, Rupert Nash, Gordon Gibb, Bianca Prodan, Max Kontak, Vyacheslav Olshevsky, Wei Der Chien
Published in: High Performance Computing - ISC High Performance 2019 International Workshops, Frankfurt, Germany, June 16-20, 2019, Revised Selected Papers, 11887, 2019, Page(s) 528-540, ISBN 978-3-030-34355-2
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-34356-9_40

Topological Data Analysis Made Easy with the Topology ToolKit, A Sequel

Author(s): Falk, Martin; Garth, Christoph; Gueunet, Charles; Levine, Joshua,; Lukasczyk, Jonas; Tierny, Julien; Vidal, Jules
Published in: IEEE Visualization Conference, Tutorials, Oct. 19-25, Vancouver, Canada, 1, 2019
Publisher: IEEE