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Molecular Signaling in Health and Disease - Interdisciplinary Centre of Excellence

Publications

Landscape of functional interactions of human processive ribonucleases revealed by high-throughput siRNA screenings

Author(s): Anna Hojka-Osinska; Aleksander Chlebowski; Joanna Grochowska; Ewelina P. Owczarek; Kamila Affek; Kamila Kłosowska-Kosicka; Roman J. Szczesny; Andrzej Dziembowski
Published in: iScience, Vol 24, Iss 9, Pp 103036- (2021), Issue 2, 2021, ISSN 2589-0042
DOI: 10.1016/j.isci.2021.103036

Three-layered control of mRNA poly(A) tail synthesis in <i>Saccharomyces cerevisiae</i>

Author(s): Matti Turtola; M. Cemre Manav; Ananthanarayanan Kumar; Agnieszka Tudek; Seweryn Mroczek; Paweł S. Krawczyk; Andrzej Dziembowski; Manfred Schmid; Lori A. Passmore; Ana Casañal; Torben Heick Jensen
Published in: Genes & Development, Issue 2, 2021, ISSN 1549-5477
DOI: 10.1101/gad.348634.121

SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments

Author(s): Paweł Piątkowski, Jagoda Jabłońska, Adriana Żyła, Dorota Niedziałek, Dorota Matelska, Elżbieta Jankowska, Tomasz Waleń, Wayne K. Dawson, Janusz M. Bujnicki
Published in: Nucleic Acids Research, Issue 45/16, 2017, Page(s) e150-e150, ISSN 0305-1048
DOI: 10.1093/nar/gkx631

Retro-translocation of mitochondrial intermembrane space proteins

Author(s): Piotr Bragoszewski, Michal Wasilewski, Paulina Sakowska, Agnieszka Gornicka, Lena Böttinger, Jian Qiu, Nils Wiedemann, Agnieszka Chacinska
Published in: Proceedings of the National Academy of Sciences, Issue 112/25, 2015, Page(s) 7713-7718, ISSN 0027-8424
DOI: 10.1073/pnas.1504615112

On the role of steric clashes in methylation control of restriction endonuclease activity

Author(s): Karolina Mierzejewska, Matthias Bochtler, Honorata Czapinska
Published in: Nucleic Acids Research, Issue 44/1, 2016, Page(s) 485-495, ISSN 0305-1048
DOI: 10.1093/nar/gkv1341

Redundans: an assembly pipeline for highly heterozygous genomes

Author(s): Leszek P. Pryszcz, Toni Gabaldón
Published in: Nucleic Acids Research, Issue 44/12, 2016, Page(s) e113-e113, ISSN 0305-1048
DOI: 10.1093/nar/gkw294

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints

Author(s): Marcin Magnus, Michał J. Boniecki, Wayne Dawson, Janusz M. Bujnicki
Published in: Nucleic Acids Research, Issue 44/W1, 2016, Page(s) W315-W319, ISSN 0305-1048
DOI: 10.1093/nar/gkw279

Coordination between the polymerase and RNase H activity of HIV-1 reverse transcriptase

Author(s): Małgorzata Figiel, Miroslav Krepl, Jarosław Poznański, Agnieszka Gołąb, Jiří Šponer, Marcin Nowotny
Published in: Nucleic Acids Research, 2017, Page(s) gkx004, ISSN 0305-1048
DOI: 10.1093/nar/gkx004

Modeling of ribonucleic acid-ligand interactions

Author(s): Filip Stefaniak, Ewa I. Chudyk, Michael Bodkin, Wayne K. Dawson, Janusz M. Bujnicki
Published in: Wiley Interdisciplinary Reviews: Computational Molecular Science, Issue 5/6, 2015, Page(s) 425-439, ISSN 1759-0876
DOI: 10.1002/wcms.1226

Chatty Mitochondria: Keeping Balance in Cellular Protein Homeostasis

Author(s): Ulrike Topf, Lidia Wrobel, Agnieszka Chacinska
Published in: Trends in Cell Biology, Issue 26/8, 2016, Page(s) 577-586, ISSN 0962-8924
DOI: 10.1016/j.tcb.2016.03.002

Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol

Author(s): Lidia Wrobel, Ulrike Topf, Piotr Bragoszewski, Sebastian Wiese, Malgorzata E. Sztolsztener, Silke Oeljeklaus, Aksana Varabyova, Maciej Lirski, Piotr Chroscicki, Seweryn Mroczek, Elzbieta Januszewicz, Andrzej Dziembowski, Marta Koblowska, Bettina Warscheid, Agnieszka Chacinska
Published in: Nature, Issue 524/7566, 2015, Page(s) 485-488, ISSN 0028-0836
DOI: 10.1038/nature14951

NPDock: a web server for protein–nucleic acid docking

Author(s): Irina Tuszynska, Marcin Magnus, Katarzyna Jonak, Wayne Dawson, Janusz M. Bujnicki
Published in: Nucleic Acids Research, Issue 43/W1, 2015, Page(s) W425-W430, ISSN 0305-1048
DOI: 10.1093/nar/gkv493

Sequence-specific cleavage of dsRNA by Mini-III RNase

Author(s): Dawid Głów, Dariusz Pianka, Agata A. Sulej, Łukasz P. Kozłowski, Justyna Czarnecka, Grzegorz Chojnowski, Krzysztof J. Skowronek, Janusz M. Bujnicki
Published in: Nucleic Acids Research, Issue 43/5, 2015, Page(s) 2864-2873, ISSN 0305-1048
DOI: 10.1093/nar/gkv009

Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae

Author(s): Agnieszka Tudek; Katarzyna Matylla-Kulińska; Pawel S Krawczyk; Torben Heick Jensen; Andrzej Dziembowski; Rafal Tomecki; Matti Turtola; Seweryn Mroczek
Published in: Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021), Issue 1, 2021, ISSN 2041-1723
DOI: 10.1038/s41467-021-25251-w