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Knowledge based design of complex synthetic microbial communities for plant protection

Deliverables

Data Management Plan

All relevant sequencing data will be deposited at the ENA European Nucleotide Archive EMBLEBI and will be publicly available upon paper publication or after 60 months latest Assembled genomes and genome data including annotations will be deposited within the EuPathDBAll customized code for data analysis will be regularly deposited and updated at githubAll data analyses and interpretation will be made available through publication in open access journals as far as possible and permitted by the type of analyses

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Publications

Distinct Phyllosphere Microbiome of Wild Tomato Species in Central Peru Upon Dysbiosis

Author(s): Paul Runge, Freddy Ventura, Eric Kemen, Remco Stam
Published in: Microbial Ecology, 2021, ISSN 0095-3628
Publisher: Springer Verlag
DOI: 10.21203/rs.3.rs-648608/v1

Predicting Lifestyle from Positive Selection Data and Genome Properties in Oomycetes

Author(s): Daniel Gómez-Pérez, Eric Kemen
Published in: Pathogens, 2021, ISSN 2076-0817
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/pathogens10070807

The Leaf Microbiome of Arabidopsis Displays Reproducible Dynamics and Patterns throughout the Growing Season

Author(s): Juliana Almario, Maryam Mahmoudi, Samuel Kroll, Mathew Agler, Aleksandra Placzek, Alfredo Mari, Eric Kemen
Published in: mBio, 2022, ISSN 2161-2129
Publisher: American Society for Microbiology
DOI: 10.1128/mbio.02825-21

Topic: Shaping the leaf microbiota: plant-microbe-microbe interactions

Author(s): Vasvi Chaudhry, Paul Runge, Priyamedha Sengupta, Gunther Doehlemann, Jane E Parker, Eric Kemen
Published in: Journal of Experimental Botany, 2020, ISSN 0022-0957
Publisher: Oxford University Press
DOI: 10.1093/jxb/eraa417

Life on leaves : uncovering temporal dynamics in Arabidopsis’ leaf microbiota

Author(s): Juliana Almario, Maryam Mahmudi, Samuel Kroll, Mathew Agler, Aleksandra Placzek, Alfredo Mari, Eric Kemen
Published in: bioRxiv, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.07.06.450897