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Ancient genomic reconstruction of convergent evolution to agriculture

Deliverables

Data Management Plan

1. Deposit research data needed to validate the results presented in scientific publications, including associated metadata, in the repository as soon as possible. Also other data (for instance data not directly attributable to a publication, or raw data), including associated metadata, should be deposited. 2. Take measures to enable any third party to access, mine, exploit, reproduce and disseminate (free of charge for any user) this research data, for instance by attaching a Creative Commons Attribution Licence (CC BY) to the data deposited, or by waiving all interests associated to copyright and database protection using the CC0 tool. 3. Provide information via the chosen repository about the tools available in order for the researchers to validate the results, e.g. specialised software or software code, algorithms and analysis protocols. Where possible, these tools or instruments should be provided.

Publications

Origins and genetic legacy of prehistoric dogs

Author(s): Anders Bergström, Laurent Frantz, Ryan Schmidt, Erik Ersmark, Ophelie Lebrasseur, Linus Girdland-Flink, Audrey T. Lin, Jan Storå, Karl-Göran Sjögren, David Anthony, Ekaterina Antipina, Sarieh Amiri, Guy Bar-Oz, Vladimir I. Bazaliiskii, Jelena Bulatović, Dorcas Brown, Alberto Carmagnini, Tom Davy, Sergey Fedorov, Ivana Fiore, Deirdre Fulton, Mietje Germonpré, James Haile, Evan K. Irving-Pease
Published in: Science, Issue 370/6516, 2020, Page(s) 557-564, ISSN 0036-8075
DOI: 10.1126/science.aba9572

An Ancient Baboon Genome Demonstrates Long-Term Population Continuity in Southern Africa

Author(s): Iain Mathieson, Federico Abascal, Lasse Vinner, Pontus Skoglund, Cristina Pomilla, Peter Mitchell, Charles Arthur, Deepti Gurdasani, Eske Willerslev, Manj S Sandhu, Genevieve Dewar
Published in: Genome Biology and Evolution, Issue 12/4, 2020, Page(s) 407-412, ISSN 1759-6653
DOI: 10.1093/gbe/evaa019

Inferring Population Histories for Ancient Genomes Using Genome-Wide Genealogies

Author(s): Leo Speidel, Lara Cassidy, Robert W Davies, Garrett Hellenthal, Pontus Skoglund, Simon R Myers
Published in: Molecular Biology and Evolution, 2021, ISSN 0737-4038
DOI: 10.1093/molbev/msab174

Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry

Author(s): Mateja Hajdinjak, Fabrizio Mafessoni, Laurits Skov, Benjamin Vernot, Alexander Hübner, Qiaomei Fu, Elena Essel, Sarah Nagel, Birgit Nickel, Julia Richter, Oana Teodora Moldovan, Silviu Constantin, Elena Endarova, Nikolay Zahariev, Rosen Spasov, Frido Welker, Geoff M. Smith, Virginie Sinet-Mathiot, Lindsey Paskulin, Helen Fewlass, Sahra Talamo, Zeljko Rezek, Svoboda Sirakova, Nikolay Sirakov, Shan
Published in: Nature, Issue 592/7853, 2021, Page(s) 253-257, ISSN 0028-0836
DOI: 10.1038/s41586-021-03335-3

Ancient DNA analysis

Author(s): Ludovic Orlando, Robin Allaby, Pontus Skoglund, Clio Der Sarkissian, Philipp W. Stockhammer, María C. Ávila-Arcos, Qiaomei Fu, Johannes Krause, Eske Willerslev, Anne C. Stone, Christina Warinner
Published in: Nature Reviews Methods Primers, Issue 1/1, 2021, ISSN 2662-8449
DOI: 10.1038/s43586-020-00011-0

Origins of modern human ancestry

Author(s): Anders Bergström, Chris Stringer, Mateja Hajdinjak, Eleanor M. L. Scerri, Pontus Skoglund
Published in: Nature, Issue 590/7845, 2021, Page(s) 229-237, ISSN 0028-0836
DOI: 10.1038/s41586-021-03244-5