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CLoud ARtificial Intelligence For pathologY

Deliverables

ESRs definition and advertisement

Definition of the different ESRs profiles and advertisements

Report on network‐wide training events_v2

Report including the network training events carried out in the period

Metadata standardization strategy and database

Collection of a substantial reference and anonymized data set of WSIs for a subset of cancer types and subsequent annotation with clinically relevant multidisciplinary information Description of metadata to be included as part of the reference dataset Description of metadata standardization strategy

Report on network‐wide training events_v1

Report including the network training events carried out in the period

CLARIFY repositories for open access

Definition of CLARIFYs open access policies and procedures to store and preserve CLARIFYs data in selected repositories

Recruitment completion

List of the recruited ESRs

WSI preprocessing and standardization protocol

Description of WSI preprocessing algorithms and standardization protocol to be used

Publications

DID-eFed: Facilitating Federated Learning as a Service with Decentralized Identities

Author(s): Jiahui Geng; Neel Kanwal; Martin Gilje Jaatun; Chunming Rong
Published in: Proceedings of EASE 2021: Evaluation and Assessment in Software Engineering, Issue June 21–23, 2021, 2021, Page(s) 329–335, ISBN 978-1-4503-9053-8
Publisher: ACM
DOI: 10.1145/3463274.3463352

FAIR-Cells: an interactive tool for enabling the FAIRness of code fragments in Jupyter notebooks

Author(s): Kruijer W., Wang Y., Koulouzis S., Li N., Bianchi R., Zhao Z.
Published in: Proceedings of the International Conference of High-Performance Computing and Simulation (HPCS) (2020), 2021
Publisher: IEEE

Optimized Federated Learning on Class-biased Distributed Data Sources

Author(s): Yongli Mou, Jiahui Geng, Sascha Welten, Chunming Rong, Stefan Decker, and Oya Beyan
Published in: Proceedings of European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD 2021), 2021
Publisher: Springer

Detection and Localization of Melanoma Skin Cancer in Histopathological Whole Slide Images

Author(s): Kanwal, Neel; Amundsen, Roger; Hardardottir, Helga; Tomasetti, Luca; Undersrud, Erling Sandoy; Janssen, Emiel A. M.; Engan, Kjersti
Published in: Proceedings of European Signal Processing Conference (EUSIPCO), Issue 31, 2023, ISBN 978-9-4645-9360-0
Publisher: European Association for Signal and Image Processing
DOI: 10.23919/eusipco58844.2023.10290087

Decentralized workflow management on software defined infrastructures

Author(s): Yuandou Wang; Zhiming Zhao
Published in: Proceedings of 2020 IEEE World Congress on Services (SERVICES), Issue 18-23 Oct. 2020, 2020, ISBN 978-1-7281-8204-9
Publisher: IEEE
DOI: 10.1109/services48979.2020.00059

Combining Attention-Based Multiple Instance Learning and Gaussian Processes for CT Hemorrhage Detection

Author(s): Wu Y., Schmidt A., Hernández-Sánchez E., Molina R., Katsaggelos A.K.
Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2021., 2021, ISBN 978-3-030-87195-6
Publisher: Springer Nature
DOI: 10.1007/978-3-030-87196-3_54

Artificial intelligence in computational pathology – challenges and future directions

Author(s): Sandra Morales; Kjersti Engan; Valery Naranjo
Published in: Digital Signal Processing, Issue 103196, 2021, ISSN 1051-2004
Publisher: Academic Press
DOI: 10.1016/j.dsp.2021.103196

An Attention-based Weakly Supervised framework for Spitzoid Melanocytic Lesion Diagnosis in WSI

Author(s): del Amor, Rocío; Launet, Laëtitia; Colomer, Adrián; Moscardó, Anaïs; Mosquera-Zamudio, Andrés; Monteagudo, Carlos; Naranjo, Valery
Published in: Artificial Intelligence in Medicine, Issue Volume 121, November 2021, 102197, 2021, ISSN 0933-3657
Publisher: Elsevier BV
DOI: 10.1016/j.artmed.2021.102197

A Deep Embedded Refined Clustering Approach for Breast Cancer Distinction based on DNA Methylation

Author(s): Rocío del Amor; Adrián Colomer; Carlos Monteagudo; Valery Naranjo
Published in: Neural Computing and Applications, 2021, ISSN 0941-0643
Publisher: Springer Verlag
DOI: 10.1007/s00521-021-06357-0

Artificial intelligence in computational pathology – challenges and future directions

Author(s): Sandra Morales; Kjersti Engan; Valery Naranjo
Published in: Digital Signal Processing, Issue Volume 119, December 2021, 103196, 2021, ISSN 1051-2004
Publisher: Academic Press
DOI: 10.1016/j.dsp.2021.103196

A Deep Embedded Refined Clustering Approach for Breast Cancer Distinction based on DNA Methylation

Author(s): Rocío del Amor; Adrián Colomer; Carlos Monteagudo; Valery Naranjo
Published in: Neural Computing and Applications, 2021, ISSN 0941-0643
Publisher: Springer Verlag
DOI: 10.1007/s00521-021-06357-0

The Devil is in the Details: Whole Slide Image Acquisition and Processing for Artifacts Detection, Color Variation, and Data Augmentation: A Review

Author(s): Neel Kanwal; Fernando Perez-Bueno; Arne Schmidt; Kjersti Engan; Rafael Molina
Published in: IEEE Access, Issue volume: 10, 2022, Page(s) 58821 - 58844, ISSN 2169-3536
Publisher: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2022.3176091

An Attention-based Weakly Supervised framework for Spitzoid Melanocytic Lesion Diagnosis in WSI

Author(s): del Amor, Rocío; Launet, Laëtitia; Colomer, Adrián; Moscardó, Anaïs; Mosquera-Zamudio, Andrés; Monteagudo, Carlos; Naranjo, Valery
Published in: Artificial Intelligence in Medicine, Issue 102197, 2021, ISSN 0933-3657
Publisher: Elsevier BV
DOI: 10.1016/j.artmed.2021.102197

Efficient Cancer Classification by Coupling Semi Supervised and Multiple Instance Learning

Author(s): Arne Schmidt, Julio Silva-Rodríguez, Valery Naranjo, Rafael Molina
Published in: IEEE Access, 2022, ISSN 2169-3536
Publisher: Institute of Electrical and Electronics Engineers Inc.
DOI: 10.1109/access.2022.3143345

Artificial Intelligence in Digital Pathology for Bladder Cancer: Hype or Hope? A Systematic Review

Author(s): Farbod Khoraminia,Saul Fuster, Neel Kanwal, Mitchell Olislagers,Kjersti Engan,Geert J. L. H. van Leenders, Andrew P. Stubbs, Farhan Akram, Tahlita C. M. Zuiverloon
Published in: Cancers, Issue Volume 15, Issue 18, 2023, ISSN 2072-6694
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/cancers15184518

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