Implementation and Sustainability of Microbial Resource Research Infrastructure for 21st Century

Deliverables

Other (3)

1st TNA call

Launch of the first call of the transnational access

Creation of a MIRRI group and events for international/ national representatives providing a forum for the invitation of new mBRCs and discussion with Decision-Makers

Report about the creation of a MIRRI group and a list of events for international/ national representatives providing a forum for the invitation of new mBRCs and discussion with Decision-Makers

MIRRI-CWE Platform – Preliminary version

A version of the Collaborative Work Environment CWE under development will be available inside the consortium for trials

Documents, reports (9)

First report on the new prospect members in MIRRI

Report about the engagement and enlargement of new prospect members at month 15.

Report of CC’s current status and presence of national nodes in European countries

Report on results of survey conducted on CCs’ about the current status and presence of national nodes in European countries (identification of geographical gaps) and if the node is included on the national RI roadmap.

First general annual report

Report summarizing all the data collected during the first year, with indication of possible delays.

First report of the EB and AB

First report of the Advisory Board, and of the Ethical Board.

Outreach and Dissemination Strategy

Report on the operational handbook, guiding the communication activities which aim at creating awareness about IS_MIRRI21 and engaging the stakeholder to take part in the activities of the platform.

Outreach and Dissemination Activities report

Report of the activities implemented under D7.1, measuring their impact (based on the established KPI’s) and providing key information for the update of the strategy in D7.3.

Updated Outreach and Dissemination Strategy

Report describing the outcome of the project concerning the Outreach and Dissemination Strategy. An updated strategy will be presented

Report on modalities for the organisation of an advanced training course for users (selection criteria for trainings and trainees)

Report the “advanced training courses” or “summer schools” for users after compiled using the competences that the IS_MIRRI21 provides as a whole. The target public will be scientists as well as industrials and international organizations using mBRCs services. Report definition of criteria for the selection of trainees, agreement on fees, the production of a set 8 learning modules that can be some of the Units offered in the Specialized EuroMiRC course (see task 5.2). These modules will be supported also by at least 8 webinars related with the topic developed. A transparent system with clear rules for call and selection process of the participants will be established and reported. A system to evaluate trainees so that they can obtain a Continuous Professional Development (CPD) certificate will be put in place under a QC/QA scheme.

Business Model for MIRRI-ERIC

Development of the business model for MIRRI-ERIC

Publications

Peer reviewed articles (20)

Additional file 1 of Microbiome definition re-visited: old concepts and new challenges

Author(s): Berg, Gabriele; Rybakova, Daria; Fischer, Doreen; Cernava, Tomislav; Marie-Christine Champomier Vergès; Charles, Trevor; Xiaoyulong Chen; Cocolin, Luca; Kellye Eversole; Corral, Gema Herrero; Kazou, Maria; Kinkel, Linda; Lange, Lene; Lima, Nelson; Loy, Alexander; Macklin, James A.; Maguin, Emmanuelle; Mauchline, Tim; McClure, Ryan; Mitter, Birgit; Ryan, Matthew; Sarand, Inga; Smidt, Hauke; Schelk
Published in: Microbiome, 1, 2020, ISSN 2049-2618
Publisher: BMC
DOI: 10.6084/m9.figshare.12592671

Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended description of Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996

Author(s): Carmen Infante-Domínguez, Rafael R. de la Haba, Paulina Corral, Cristina Sanchez-Porro, David R. Arahal, Antonio Ventosa
Published in: International Journal of Systematic and Evolutionary Microbiology, 70/3, 2020, Page(s) 1698-1705, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.003956

Collection of VKM Paleofungi

Author(s): Galina Kochkina, Nataliya Ivanushkina, Svetlana Ozerskaya
Published in: Diversity, 13/9, 2021, Page(s) 402, ISSN 1424-2818
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/d13090402

Functional and Healthy Features of Conventional and Non-Conventional Sourdoughs

Author(s): Luciana De Vero, Giovanna Iosca, Maria Gullo, Andrea Pulvirenti
Published in: Applied Sciences, 11/8, 2021, Page(s) 3694, ISSN 2076-3417
Publisher: MDPI
DOI: 10.3390/app11083694

Development of Microbiome Biobanks – Challenges and Opportunities

Author(s): M.J. Ryan, M. Schloter, G. Berg, T. Kostic, L.L. Kinkel, K. Eversole, J.A. Macklin, B. Schelkle, M. Kazou, I. Sarand, B.K. Singh, D. Fischer, E. Maguin, I. Ferrocino, N. Lima, R.S. McClure, T.C. Charles, R.S.C. de Souza, G.S. Kiran, H.L. Krug, J. Taffner, H. Roume, J. Selvin, D. Smith, D. Rybakova, A. Sessitsch
Published in: Trends in Microbiology, 29/2, 2021, Page(s) 89-92, ISSN 0966-842X
Publisher: Elsevier BV
DOI: 10.1016/j.tim.2020.06.009

Specialisation of Yeast Genera in Different Phases of Bee Bread Maturation

Author(s): Roxane Detry, Noa Simon-Delso, Etienne Bruneau and Heide-Marie Daniel
Published in: Microorganisms, Microorganisms 2020, 8(11), 1789, 2020, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms8111789

Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination

Author(s): Mathieu Dupré, Magalie Duchateau, Christian Malosse, Diogo Borges-Lima, Valeria Calvaresi, Isabelle Podglajen, Dominique Clermont, Martial Rey, and Julia Chamot-Rooke
Published in: Journal of Proteome Research, Journal of Proteome Research, 20(1), 202-211, 2021, Page(s) 202-211, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/acs.jproteome.0c00351

New ECCO model documents for Material Deposit and Transfer Agreements in compliance with the Nagoya Protocol

Author(s): Gerard Verkley, Giancarlo Perrone, Mery Piña, Amber Hartman Scholz, Jörg Overmann, Aurora Zuzuarregui, Iolanda Perugini, Benedetta Turchetti, Marijke Hendrickx, Glyn Stacey, Samantha Law, Julie Russell, David Smith, Nelson Lima
Published in: FEMS Microbiology Letters, 367/5, 2020, ISSN 1574-6968
Publisher: OXFORD Academic
DOI: 10.1093/femsle/fnaa044

Mesonia oceanica sp. nov., isolated from oceans during the Tara oceans expedition, with a preference for mesopelagic waters

Author(s): Teresa Lucena, Isabel Sanz-Sáez, David R. Arahal, Silvia G. Acinas, Olga Sánchez, Carlos Pedrós-Alió, Rosa Aznar, María J. Pujalte
Published in: International Journal of Systematic and Evolutionary Microbiology, 70/7, 2020, Page(s) 4329-4338, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.004296

Microbiome definition re-visited: old concepts and new challenges

Author(s): Gabriele Berg, Daria Rybakova, Doreen Fischer, Tomislav Cernava, Marie-Christine Champomier Vergès, Trevor Charles, Xiaoyulong Chen, Luca Cocolin, Kellye Eversole, Gema Herrero Corral, Maria Kazou, Linda Kinkel, Lene Lange, Nelson Lima, Alexander Loy, James A. Macklin, Emmanuelle Maguin, Tim Mauchline, Ryan McClure, Birgit Mitter, Matthew Ryan, Inga Sarand, Hauke Smidt, Bettina Schelkle, Hugo Rou
Published in: Microbiome, 8/1, 2020, ISSN 2049-2618
Publisher: BMC-Springer
DOI: 10.1186/s40168-020-00875-0

Methylobacterium symbioticum sp. nov., a new species isolated from spores of Glomus iranicum var. tenuihypharum

Author(s): Jose Antonio Pascual, Margarita Ros, Jesus Martínez, Francisco Carmona, Antonio Bernabé, Rocío Torres, Teresa Lucena, Rosa Aznar, David R. Arahal, Felix Fernández
Published in: Current Microbiology, 77/9, 2020, Page(s) 2031-2041, ISSN 0343-8651
Publisher: Springer Verlag
DOI: 10.1007/s00284-020-02101-4

Implementation of the Nagoya Protocol within the Collection of Institut Pasteur

Author(s): Raquel Hurtado-Ortiz, Alexandra Hébreu, Evelyne Bégaud, Chantal Bizet-Pinson
Published in: Access Microbiology, Access Microbiology 1.2 (2019), 2019, Page(s) 1-5, ISSN 2516-8290
Publisher: Microbiology Society
DOI: 10.1099/acmi.0.000008

Opinions 97, 98 and 99

Author(s): David R. Arahal
Published in: International Journal of Systematic and Evolutionary Microbiology, 70/2, 2020, Page(s) 1439-1440, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.003921

Preservation, Characterization and Exploitation of Microbial Biodiversity: The Perspective of the Italian Network of Culture Collections

Author(s): Luciana De Vero, Maria Beatrice Boniotti, Marilena Budroni, Pietro Buzzini, Stefano Cassanelli, Roberta Comunian, Maria Gullo, Antonio F. Logrieco, Ilaria Mannazzu, Rosario Musumeci, Iolanda Perugini, Giancarlo Perrone, Andrea Pulvirenti, Paolo Romano, Benedetta Turchetti and Giovanna Cristina Varese
Published in: Microorganisms, Microorganisms 2019, 7(12), 685, 2019, Page(s) 1-18, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms7120685

gcType: a high-quality type strain genome database for microbial phylogenetic and functional research

Author(s): Wenyu Shi, Qinglan Sun, Guomei Fan, Sugawara Hideaki, Ohkuma Moriya, Takashi Itoh, Yuguang Zhou, Man Cai, Song-Gun Kim, Jung-Sook Lee, Ivo Sedlacek, David R Arahal, Teresa Lucena, Hiroko Kawasaki, Lyudmila Evtushenko, Bevan S Weir, Sarah Alexander, Dlauchy Dénes, Somboon Tanasupawat, Lily Eurwilaichitr, Supawadee Ingsriswang, Bruno Gomez-Gil, Manzour H Hazbón, Marco A Riojas, Chatrudee Suwanna
Published in: Nucleic Acids Research, 49/D1, 2020, Page(s) D694-D705, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa957

Diversity and distribution of marine heterotrophic bacteria from a large culture collection

Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós-Alió, Olga Sánchez, Silvia G. Acinas
Published in: BMC Microbiology, 20/1, 2020, ISSN 1471-2180
Publisher: BioMed Central
DOI: 10.1186/s12866-020-01884-7

Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae

Author(s): Teresa Lucena, David R. Arahal, Isabel Sanz-Sáez, Silvia G. Acinas, Olga Sánchez, Rosa Aznar, Carlos Pedrós-Alió, María J. Pujalte
Published in: International Journal of Systematic and Evolutionary Microbiology, 70/2, 2020, Page(s) 1231-1239, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.003906

The Ability of Riboflavin-Overproducing Lactiplantibacillus plantarum Strains to Survive Under Gastrointestinal Conditions

Author(s): Annel M. Hernández-Alcántara, Sandra Pardo, Mari Luz Mohedano, Graciela M. Vignolo, Alejandra de Moreno de LeBlanc, Jean Guy LeBlanc, Rosa Aznar, Paloma López
Published in: Frontiers in Microbiology, 11, 2020, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.591945

Opinions 100, 101 and 102

Author(s): David R. Arahal
Published in: International Journal of Systematic and Evolutionary Microbiology, 70/9, 2020, Page(s) 5177-5181, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.004390

Isolation by Miniaturized Culture Chip of an Antarctic bacterium Aequorivita sp. with antimicrobial and anthelmintic activity

Author(s): Fortunato Palma Esposito,Colin J. Inghamb, Raquel Hurtado-Ortiz, Chantal Bizet, Deniz Tasdemire, Donatella de Pascale
Published in: Biotechnology Reports, 2020, ISSN 2215-017X
Publisher: Elsevier BV
DOI: 10.1016/j.btre.2018.e00281

Other (1)

StrainsApp: el catálogo de microorganismos españoles accesible “on-line”

Author(s): Lidia Rodrigo-Torres, Aurora Zuzuarregui Miró, José Miguel López Coronado, and Rosa Aznar Novella
Published in: SEM@FORO, 69, 2020
Publisher: SEM@FORO

Book chapters (2)

Public perception of microorganisms and microbiology education: a need for enhancing society’s microbiology literacy

Author(s): Graça S. Carvalho and Nelson Lima
Published in: Importance of Microbiology Teaching and Microbial Resource Management for Sustainable Futures, 2022, Page(s) 31-45, ISBN 978-0-12-818272-7
Publisher: Elsevier Inc.
DOI: 10.1016/b978-0-12-818272-7.00006-7

Quality and competence management in microbial biobanks

Author(s): Anabela Martins, Joaquim F. Martins da Silva, Paulo Sampaio and Nelson Lima
Published in: Importance of Microbiology Teaching and Microbial Resource Management for Sustainable Futures, 2022, Page(s) 157-192, ISBN 978-0-12-818272-7
Publisher: Elsevier Inc.
DOI: 10.1016/b978-0-12-818272-7.00009-2