CORDIS - EU research results
CORDIS

Implementation and Sustainability of Microbial Resource Research Infrastructure for 21st Century

Deliverables

1st TNA call

Launch of the first call of the transnational access

Creation of a MIRRI group and events for international/ national representatives providing a forum for the invitation of new mBRCs and discussion with Decision-Makers

Report about the creation of a MIRRI group and a list of events for international/ national representatives providing a forum for the invitation of new mBRCs and discussion with Decision-Makers

MIRRI-CWE Platform – Preliminary version

A version of the Collaborative Work Environment CWE under development will be available inside the consortium for trials

Curriculum and teaching methods for the Specialized EuroMiRC course

Report the implementation of a Specialization course including the structure and syllabus A transparent system with clear rules for call and selection process of the participants will be established and follow the QCQA procedures that the HEI have put in place for their accreditation systems

Second report of the EB and AB

Second year report of the Advisory Board and of the Ethical Board

First report on the new prospect members in MIRRI

Report about the engagement and enlargement of new prospect members at month 15.

Report on technical and scientific achievements of the Transnational access

Report on the technical and scientific achievements of the Transnational access including a summary of the applications and the activities that were chosen for access

Report of CC’s current status and presence of national nodes in European countries

Report on results of survey conducted on CCs’ about the current status and presence of national nodes in European countries (identification of geographical gaps) and if the node is included on the national RI roadmap.

First general annual report

Report summarizing all the data collected during the first year, with indication of possible delays.

First report of the EB and AB

First report of the Advisory Board, and of the Ethical Board.

Report on the feasibility of the implementation of ISO 20387 in MIRRI partner mBRCs

The feasibility of implementing common standards eg ISO 9001 ISO 17025 ISO 20387 etc from MIRRI Partner Charter and MIRRI Policies will be examined The report developed by the ISMIRRI21 experts will compile a checklist with the requirements of this ISO 20387 standard The complete selfevaluation will be done visiting these mBRCs by a team of 2 experts From the result of the internal audits gap analysis for each mBRC audited will be reported Key issues will be listed and possible solutions discussed Report on achievements of two workshops on to present and explain the new ISO 203872018 standard for biobanks and how reach appropriate levels of harmonization quality management and the challenge of implementing quality management under given available capacity and budgets of the individual partner mBRCs

Business plan for MIRRI-ERIC

Report of the business plan for MIRRIERIC

Second general annual report

Report summarizing all the data collected during the second year with indication of possible delays Comprehensive discussion of the main achievements and indication of what is foreseen for the last year

Outreach and Dissemination Strategy

Report on the operational handbook, guiding the communication activities which aim at creating awareness about IS_MIRRI21 and engaging the stakeholder to take part in the activities of the platform.

Report on the effect of implementing the MIRRI Policy and Best Practice on ABS on trust and use of mBRC services by stakeholders

Report of the results with recommendations to improve compliant services and foster trust from the team of ABS experts from the ISMIRRI21 mBRC partners after interviews of selected stakeholders about their experiences with deposit and ordering of materials from MIRRI mBRCs and the procedures that these collections use concerning ABS relevant data material transfer agreements etc

Outreach and Dissemination Activities report

Report of the activities implemented under D7.1, measuring their impact (based on the established KPI’s) and providing key information for the update of the strategy in D7.3.

Guidance document on implementing Biorisk management in MIRRI mBRCs

Together with the expert cluster the ISMIRRI21 partners will deliver a guidance document for the MIRRIERIC community and beyond that supplements the code of conduct and could for example help to clarify definitions to avoid the misconceptions that exist with regard to legal definitions or provide a more detailed guideline for risk assessment and developments in bioethics

Updated Outreach and Dissemination Strategy

Report describing the outcome of the project concerning the Outreach and Dissemination Strategy. An updated strategy will be presented

Report on modalities for the organisation of an advanced training course for users (selection criteria for trainings and trainees)

Report the “advanced training courses” or “summer schools” for users after compiled using the competences that the IS_MIRRI21 provides as a whole. The target public will be scientists as well as industrials and international organizations using mBRCs services. Report definition of criteria for the selection of trainees, agreement on fees, the production of a set 8 learning modules that can be some of the Units offered in the Specialized EuroMiRC course (see task 5.2). These modules will be supported also by at least 8 webinars related with the topic developed. A transparent system with clear rules for call and selection process of the participants will be established and reported. A system to evaluate trainees so that they can obtain a Continuous Professional Development (CPD) certificate will be put in place under a QC/QA scheme.

Business Model for MIRRI-ERIC

Development of the business model for MIRRI-ERIC

Publications

Additional file 1 of Microbiome definition re-visited: old concepts and new challenges

Author(s): Berg, Gabriele; Rybakova, Daria; Fischer, Doreen; Cernava, Tomislav; Marie-Christine Champomier Vergès; Charles, Trevor; Xiaoyulong Chen; Cocolin, Luca; Kellye Eversole; Corral, Gema Herrero; Kazou, Maria; Kinkel, Linda; Lange, Lene; Lima, Nelson; Loy, Alexander; Macklin, James A.; Maguin, Emmanuelle; Mauchline, Tim; McClure, Ryan; Mitter, Birgit; Ryan, Matthew; Sarand, Inga; Smidt, Hauke; Schelk
Published in: Microbiome, Issue 1, 2020, ISSN 2049-2618
Publisher: BMC
DOI: 10.6084/m9.figshare.12592671

Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended description of Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996

Author(s): Carmen Infante-Domínguez, Rafael R. de la Haba, Paulina Corral, Cristina Sanchez-Porro, David R. Arahal, Antonio Ventosa
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 70/3, 2020, Page(s) 1698-1705, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.003956

Collection of VKM Paleofungi

Author(s): Galina Kochkina, Nataliya Ivanushkina, Svetlana Ozerskaya
Published in: Diversity, Issue 13/9, 2021, Page(s) 402, ISSN 1424-2818
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/d13090402

Functional and Healthy Features of Conventional and Non-Conventional Sourdoughs

Author(s): Luciana De Vero, Giovanna Iosca, Maria Gullo, Andrea Pulvirenti
Published in: Applied Sciences, Issue 11/8, 2021, Page(s) 3694, ISSN 2076-3417
Publisher: MDPI
DOI: 10.3390/app11083694

Development of Microbiome Biobanks – Challenges and Opportunities

Author(s): M.J. Ryan, M. Schloter, G. Berg, T. Kostic, L.L. Kinkel, K. Eversole, J.A. Macklin, B. Schelkle, M. Kazou, I. Sarand, B.K. Singh, D. Fischer, E. Maguin, I. Ferrocino, N. Lima, R.S. McClure, T.C. Charles, R.S.C. de Souza, G.S. Kiran, H.L. Krug, J. Taffner, H. Roume, J. Selvin, D. Smith, D. Rybakova, A. Sessitsch
Published in: Trends in Microbiology, Issue 29/2, 2021, Page(s) 89-92, ISSN 0966-842X
Publisher: Elsevier BV
DOI: 10.1016/j.tim.2020.06.009

Specialisation of Yeast Genera in Different Phases of Bee Bread Maturation

Author(s): Roxane Detry, Noa Simon-Delso, Etienne Bruneau and Heide-Marie Daniel
Published in: Microorganisms, Issue Microorganisms 2020, 8(11), 1789, 2020, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms8111789

Optimization of a Top-Down Proteomics Platform for Closely Related Pathogenic Bacterial Discrimination

Author(s): Mathieu Dupré, Magalie Duchateau, Christian Malosse, Diogo Borges-Lima, Valeria Calvaresi, Isabelle Podglajen, Dominique Clermont, Martial Rey, and Julia Chamot-Rooke
Published in: Journal of Proteome Research, Issue Journal of Proteome Research, 20(1), 202-211, 2021, Page(s) 202-211, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/acs.jproteome.0c00351

New ECCO model documents for Material Deposit and Transfer Agreements in compliance with the Nagoya Protocol

Author(s): Gerard Verkley, Giancarlo Perrone, Mery Piña, Amber Hartman Scholz, Jörg Overmann, Aurora Zuzuarregui, Iolanda Perugini, Benedetta Turchetti, Marijke Hendrickx, Glyn Stacey, Samantha Law, Julie Russell, David Smith, Nelson Lima
Published in: FEMS Microbiology Letters, Issue 367/5, 2020, ISSN 1574-6968
Publisher: OXFORD Academic
DOI: 10.1093/femsle/fnaa044

Mesonia oceanica sp. nov., isolated from oceans during the Tara oceans expedition, with a preference for mesopelagic waters

Author(s): Teresa Lucena, Isabel Sanz-Sáez, David R. Arahal, Silvia G. Acinas, Olga Sánchez, Carlos Pedrós-Alió, Rosa Aznar, María J. Pujalte
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 70/7, 2020, Page(s) 4329-4338, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.004296

Microbiome definition re-visited: old concepts and new challenges

Author(s): Gabriele Berg, Daria Rybakova, Doreen Fischer, Tomislav Cernava, Marie-Christine Champomier Vergès, Trevor Charles, Xiaoyulong Chen, Luca Cocolin, Kellye Eversole, Gema Herrero Corral, Maria Kazou, Linda Kinkel, Lene Lange, Nelson Lima, Alexander Loy, James A. Macklin, Emmanuelle Maguin, Tim Mauchline, Ryan McClure, Birgit Mitter, Matthew Ryan, Inga Sarand, Hauke Smidt, Bettina Schelkle, Hugo Rou
Published in: Microbiome, Issue 8/1, 2020, ISSN 2049-2618
Publisher: BMC-Springer
DOI: 10.1186/s40168-020-00875-0

Methylobacterium symbioticum sp. nov., a new species isolated from spores of Glomus iranicum var. tenuihypharum

Author(s): Jose Antonio Pascual, Margarita Ros, Jesus Martínez, Francisco Carmona, Antonio Bernabé, Rocío Torres, Teresa Lucena, Rosa Aznar, David R. Arahal, Felix Fernández
Published in: Current Microbiology, Issue 77/9, 2020, Page(s) 2031-2041, ISSN 0343-8651
Publisher: Springer Verlag
DOI: 10.1007/s00284-020-02101-4

Depiction of the In Vitro and Genomic Basis of Resistance to Hop and High Hydrostatic Pressure of Lactiplantibacillus plantarum Isolated from Spoiled Beer

Author(s): Joanna Bucka-Kolendo, Despoina Eugenia Kiousi, Adrian Wojtczak, Agapi I. Doulgeraki, Alex Galanis, and Barbara Sokołowska
Published in: Genes, Issue 14(9), 2023, Page(s) 1710, ISSN 2073-4425
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes14091710

Implementation of the Nagoya Protocol within the Collection of Institut Pasteur

Author(s): Raquel Hurtado-Ortiz, Alexandra Hébreu, Evelyne Bégaud, Chantal Bizet-Pinson
Published in: Access Microbiology, Issue Access Microbiology 1.2 (2019), 2019, Page(s) 1-5, ISSN 2516-8290
Publisher: Microbiology Society
DOI: 10.1099/acmi.0.000008

Opinions 97, 98 and 99

Author(s): David R. Arahal
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 70/2, 2020, Page(s) 1439-1440, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.003921

Preservation, Characterization and Exploitation of Microbial Biodiversity: The Perspective of the Italian Network of Culture Collections

Author(s): Luciana De Vero, Maria Beatrice Boniotti, Marilena Budroni, Pietro Buzzini, Stefano Cassanelli, Roberta Comunian, Maria Gullo, Antonio F. Logrieco, Ilaria Mannazzu, Rosario Musumeci, Iolanda Perugini, Giancarlo Perrone, Andrea Pulvirenti, Paolo Romano, Benedetta Turchetti and Giovanna Cristina Varese
Published in: Microorganisms, Issue Microorganisms 2019, 7(12), 685, 2019, Page(s) 1-18, ISSN 2076-2607
Publisher: MDPI
DOI: 10.3390/microorganisms7120685

Impact of high hydrostatic pressure on the single nucleotide polymorphism of stress-related dnaK, hrcA, and ctsR in the Lactobacillus strains

Author(s): Joanna Bucka-Kolendo and Barbara Sokołowska
Published in: Quality Assurance and Safety of Crops & Foods, Issue 14.4, 2022, Page(s) 54-66, ISSN 1757-837X
Publisher: CODON Publications

gcType: a high-quality type strain genome database for microbial phylogenetic and functional research

Author(s): Wenyu Shi, Qinglan Sun, Guomei Fan, Sugawara Hideaki, Ohkuma Moriya, Takashi Itoh, Yuguang Zhou, Man Cai, Song-Gun Kim, Jung-Sook Lee, Ivo Sedlacek, David R Arahal, Teresa Lucena, Hiroko Kawasaki, Lyudmila Evtushenko, Bevan S Weir, Sarah Alexander, Dlauchy Dénes, Somboon Tanasupawat, Lily Eurwilaichitr, Supawadee Ingsriswang, Bruno Gomez-Gil, Manzour H Hazbón, Marco A Riojas, Chatrudee Suwanna
Published in: Nucleic Acids Research, Issue 49/D1, 2020, Page(s) D694-D705, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa957

Diversity and distribution of marine heterotrophic bacteria from a large culture collection

Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós-Alió, Olga Sánchez, Silvia G. Acinas
Published in: BMC Microbiology, Issue 20/1, 2020, ISSN 1471-2180
Publisher: BioMed Central
DOI: 10.1186/s12866-020-01884-7

Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae

Author(s): Teresa Lucena, David R. Arahal, Isabel Sanz-Sáez, Silvia G. Acinas, Olga Sánchez, Rosa Aznar, Carlos Pedrós-Alió, María J. Pujalte
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 70/2, 2020, Page(s) 1231-1239, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.003906

The Ability of Riboflavin-Overproducing Lactiplantibacillus plantarum Strains to Survive Under Gastrointestinal Conditions

Author(s): Annel M. Hernández-Alcántara, Sandra Pardo, Mari Luz Mohedano, Graciela M. Vignolo, Alejandra de Moreno de LeBlanc, Jean Guy LeBlanc, Rosa Aznar, Paloma López
Published in: Frontiers in Microbiology, Issue 11, 2020, ISSN 1664-302X
Publisher: Frontiers Media
DOI: 10.3389/fmicb.2020.591945

Opinions 100, 101 and 102

Author(s): David R. Arahal
Published in: International Journal of Systematic and Evolutionary Microbiology, Issue 70/9, 2020, Page(s) 5177-5181, ISSN 1466-5026
Publisher: Society for General Microbiology
DOI: 10.1099/ijsem.0.004390

Isolation by Miniaturized Culture Chip of an Antarctic bacterium Aequorivita sp. with antimicrobial and anthelmintic activity

Author(s): Fortunato Palma Esposito,Colin J. Inghamb, Raquel Hurtado-Ortiz, Chantal Bizet, Deniz Tasdemire, Donatella de Pascale
Published in: Biotechnology Reports, 2020, ISSN 2215-017X
Publisher: Elsevier BV
DOI: 10.1016/j.btre.2018.e00281

Microbial Resource Research Infrastructure for the 21st Century: usability analysis of the Collaborative Working Environment

Author(s): Iara Margolis, Lidia Rodrigo-Torres, Ana Mackay, Ana Faria, Anna Poli, Luis Almeida, Valeria Prigione, Antonio Vara, Adriana Chiarelli, Luís Soares, Rosa Aznar, Emanuel Sousa
Published in: AHFE (2023) International Conference, Issue 110, 2023
Publisher: AHFE International
DOI: 10.54941/ahfe1003176

15th International Conference on Culture Collections: Exploiting Microbial Resources to Support Social Wellbeing

Author(s): Editors: Nelson Lima Carla Santos Célia Soares Manuel G. Silva Ana João Ferreira Ricardo Meirelles Cruz Authors: Participants in the Conference
Published in: ICCC15 International Conference on Culture Collections, 2023, ISBN 978-972-97916-6-6
Publisher: MUM - Micoteca da Universidade do Minho

How Can Microbial Resources Contribute to a Sustainable Agriculture and Food Security?

Author(s): Ricardo M. Cruz; Nelson Lima
Published in: Aplicações e perspectivas para a agricultura do futuro: anais do V Simpósio de Microbiologia Agrícola, 2023, ISBN 978-65-87391-51-9
Publisher: Piracicaba, SP

StrainsApp: el catálogo de microorganismos españoles accesible “on-line”

Author(s): Lidia Rodrigo-Torres, Aurora Zuzuarregui Miró, José Miguel López Coronado, and Rosa Aznar Novella
Published in: SEM@FORO, Issue 69, 2020
Publisher: SEM@FORO

Public perception of microorganisms and microbiology education: a need for enhancing society’s microbiology literacy

Author(s): Graça S. Carvalho and Nelson Lima
Published in: Importance of Microbiology Teaching and Microbial Resource Management for Sustainable Futures, 2022, Page(s) 31-45, ISBN 978-0-12-818272-7
Publisher: Elsevier Inc.
DOI: 10.1016/b978-0-12-818272-7.00006-7

Quality and competence management in microbial biobanks

Author(s): Anabela Martins, Joaquim F. Martins da Silva, Paulo Sampaio and Nelson Lima
Published in: Importance of Microbiology Teaching and Microbial Resource Management for Sustainable Futures, 2022, Page(s) 157-192, ISBN 978-0-12-818272-7
Publisher: Elsevier Inc.
DOI: 10.1016/b978-0-12-818272-7.00009-2

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