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HPC/Exascale Centre of Excellence in Personalised Medicine - PerMedCoE

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Publications

Patient-specific Boolean models of signalling networks guide personalised treatments

Author(s): Arnau Montagud, Jonas Béal, Luis Tobalina, Pauline Traynard, Vigneshwari Subramanian, Bence Szalai, Róbert Alföldi, László Puskás, Alfonso Valencia, Emmanuel Barillot, Julio Saez-Rodriguez, Laurence Calzone
Published in: Computational and Systems Biology, 2022, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/elife.72626

COBREXA.jl: constraint-based reconstruction and exascale analysis

Author(s): Miroslav Kratochvíl, Laurent Heirendt, St Elmo Wilken, Taneli Pusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst, Venkata P Satagopam, Oliver Ebenhöh, Reinhard Schneider, Christophe Trefois, Wei Gu
Published in: Bioinformatics, Volume 38, Issue 4, 15 February 2022, 2021, Page(s) 1171–1172, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btab782

BioFVM-X: an MPI+OpenMP 3-D simulator for biological systems

Author(s): Saxena, Gaurav; Ponce De Leon, Miguel; Montagud, Arnau; Vicente Dorca, David; Valencia, Alfonso
Published in: Part of the Lecture Notes in Computer Science book series (LNCS, volume 12881), 1, 2021, ISBN 978-3-030-85633-5
Publisher: Springer
DOI: 10.1007/978-3-030-85633-5_18