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Content archived on 2024-04-30

Three-dimensional molecular structures of proteins deduced from genome sequence data by homology modelling

Objective



The human genome encodes about 100000 different proteins. As a result of genome sequencing projects the sequences of nearly all of these will be known (from cDNAs) by about 1997 or 1998. For only about 500 human proteins are 3D coordinates known, and this number only grows slowly. The imbalance between these two types of knowledge can be reduced considerably by making use of the technique of homology modelling. At the moment, about one in six new eukaryotic sequences can be modelled , and we can therefore confidently estimate that about 20000 models can be built by 1998.
The goals of the project are:
- development of tools to produce reliable structural models of proteins from genetic sequence data using the technique of homology modelling; - improvement of both statistical and physical modelling methods to assure the highest possible quality of the models;
- modelling about 20000 human proteins from genome-derived sequences; - the public availability of these models and the model building tools to European researchers and educators as a service over Internet; - provision of viewing and analysis software for personal computers and workstations to assure the widest possible dissemination of knowledge about three-dimensional structures of human proteins.
The modelling servers will be freely available not only to academic but also to industrial users. One of the servers will guarantee complete confidentiality for those that require it. Synergistic effects are anticipated with other European projects, such as the planned European branch of the PDB, the SRS project of linking databases, and projects aimed at linking human genome databases, such as IGD.

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Coordinator

EUROPEAN MOLECULAR BIOLOGY LABORATORY
EU contribution
No data
Address
Meyerhofstrasse 1
HEIDELBERG
Germany

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Participants (3)

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