DNA sequences from different Gyrodactylus species, populations and forms display variations that can be exploited to develop diagnostic tests that can be perceived as more objective than microscopic examination. In addition, for some species or types, such as G. salaris, G. thymalli, G. teuchis and G. salaris-like G. x, morphological characters may fall within the same range, and therefore alternative methods are required for laboratories that do not have personnel that are skilled and experienced in Gyrodactylus examinations. Sequences from variable region V4 of the small subunit ribosomal RNA (rRNA) gene, the rRNA internal transcribed spcer (ITS) and intergenic spacer (IGS) have been determined and described, along with the methodology used and the clones produced. Variations between most Gyrodactylus species and between G. salaris and G. salaris-like G. x can be demonstrated by restriction enzyme digestion of amplified ITS. Differences between G. salaris and G. thymalli and between different G. salaris populations occur within the IGS.
The degree of variation within the ITS and IGS have been assessed and do not significantly affect the use of these regions of the genome for identification of species and strains, respectively.
An alternative region of the genome has also been examined and appears promising for species discrimination. The exploitation of these results requires molecular biology technology in order to provide objective molecular markers for the different forms of Gyrodactylus examined.