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Preparation for EMPHASIS: European Infrastructure for multi-scale Plant Phenomics and Simulation for food security in a changing climate

Deliverables

Link with other information systems

Integration of EMPHASIS into general e-infrastructures (European and national level)

Data policy rules

Data policy rules

Map of data practices

Map of current data management organisation and storage in national infrastructures

Mapping of training activities

Mapping of training activities related to different aspects of plant phenotyping

Criteria for life cycle assessment

Criteria and processes for life cycle of research infrastructure within different pillars of research infrastructure categories from EMPHASIS processes

Report on current and future user demands

Report on current and future user demands based on mapping of existing user demands of access to different infrastructure categories and access modes

Report on operations for selection of host country for EMPHASIS central hub and potential services

Selection procedure for the host country of the hub and the services

Trend document

Forsight study and trend analysis to evaluate future developments of sensors user demand user diversity etc

Report on an integrated business plan

Report on an integrated business plan for EMPHASIS including Infrastructure design user demand einfrastructure financial processes legal framework governance communication strategy

Analysis of imaging approaches

Mapping and gapping analysis of imaging approaches in different PPI

Report on user orientation towards services

Report on the orientation of users towars different service scenarios that may be provided within EMPHASIS

Governance framework including roles and responsibilities for the implementation phase

Report on operational processes of EMPHASIS for the implementation phase

Gap analysis

Gap analysis including first ideas to overcome these in i) controlled environment/ high throughput phenotyping ii) intensive, highly equipped and semi-controlled field sites, iii) lean field phenotyping sites, iv) modelling platforms.

Governance and Statutes for the EMPHASIS Operational Phase

Define Statutes ruling the governance and other procedures in EMPHASIS

Criteria list for user demand

Criteria list for user demands in different infrastructure pillars and access modes

Mapping: list of existing/upcoming infrastructures

Mapping: list of existing/upcoming infrastructures in i) controlled environment/ high throughput phenotyping ii) intensive, highly equipped and semi-controlled field sites, iii) lean field phenotyping sites, iv) modelling platforms.

Criteria list for infrastructure

List of criteria defing different categories of infrastructure i) controlled environment/ high throughput phenotyping ii) intensive, highly equipped and semi-controlled field sites, iii) lean field phenotyping sites, iv) modelling platforms

Strategy: Data Management Plan

Strategy (Data Management Plan) for a European Plant Phenotyping Information System

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Publications

Opportunities and Limitations of Crop Phenotyping in Southern European Countries

Author(s): Joaquim Miguel Costa, Jorge Marques da Silva, Carla Pinheiro, Matilde Barón, Photini Mylona, Mauro Centritto, Matthew Haworth, Francesco Loreto, Baris Uzilday, Ismail Turkan, Maria Margarida Oliveira
Published in: Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
DOI: 10.3389/fpls.2019.01125

Phenotyping: New Windows into the Plant for Breeders

Author(s): Michelle Watt, Fabio Fiorani, Björn Usadel, Uwe Rascher, Onno Muller, Ulrich Schurr
Published in: Annual Review of Plant Biology, Issue 71/1, 2020, Page(s) 689-712, ISSN 1543-5008
DOI: 10.1146/annurev-arplant-042916-041124

Current status of the multinational Arabidopsis community

Author(s): Geraint Parry, Nicholas J. Provart, Siobhan M. Brady, Baris Uzilday, Keith Adams, Wagner Araújo, Sébastien Aubourg, Sacha Baginsky, Erica Bakker, Katja Bärenfaller, Jacqui Batley, Mike Beale, Mark Beilstein, Youssef Belkhadir, Gregor Mendel, Tanya Berardini, Joy Bergelson, Francisca Blanco‐Herrera, Siobhan Brady, Hans‐Peter Braun, Steve Briggs, Lynette Brownfield, Maura Cardarelli, Marcos C
Published in: Plant Direct, Issue 4/7, 2020, ISSN 2475-4455
DOI: 10.1002/pld3.248

European infrastructures for sustainable agriculture

Author(s): Jacques Roy, François Tardieu, Michèle Tixier-Boichard, Ulrich Schurr
Published in: Nature Plants, Issue 3/10, 2017, Page(s) 756-758, ISSN 2055-0278
DOI: 10.1038/s41477-017-0027-3

Plant Phenotyping Research Trends, a Science Mapping Approach

Author(s): Corrado Costa, Ulrich Schurr, Francesco Loreto, Paolo Menesatti, Sebastien Carpentier
Published in: Frontiers in Plant Science, Issue 9, 2019, ISSN 1664-462X
DOI: 10.3389/fpls.2018.01933

The Phenotyping Dilemma—The Challenges of a Diversified Phenotyping Community

Author(s): Eva Rosenqvist, Dominik K. Großkinsky, Carl-Otto Ottosen, Rick van de Zedde
Published in: Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X
DOI: 10.3389/fpls.2019.00163

Plant Phenotyping: Past, Present, and Future

Author(s): Roland Pieruschka, Uli Schurr
Published in: Plant Phenomics, Issue 2019, 2019, Page(s) 1-6, ISSN 2643-6515
DOI: 10.34133/2019/7507131

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Author(s): Evangelia A. Papoutsoglou, Daniel Faria, Daniel Arend, Elizabeth Arnaud, Ioannis N. Athanasiadis, Inês Chaves, Frederik Coppens, Guillaume Cornut, Bruno V. Costa, Hanna Ćwiek‐Kupczyńska, Bert Droesbeke, Richard Finkers, Kristina Gruden, Astrid Junker, Graham J. King, Paweł Krajewski, Matthias Lange, Marie‐Angélique Laporte, Célia Michotey, Markus Oppermann, Richard Ostler, Hendrik Poorte
Published in: New Phytologist, Issue 227/1, 2020, Page(s) 260-273, ISSN 0028-646X
DOI: 10.1111/nph.16544

Integrating plant phenotyping community in Europe

Author(s): Pieruschka, Roland
Published in: COST Action, Novi Sad, Serbia, 2017-09-29 - 2017-09-30, Issue 1, 2017, Page(s) 13

From Bench to Bountiful Harvests Multinational Arabidopsis Steering Committee (MASC) Annual Report 2018/2019

Author(s): The Multinational Arabidopsis Steering Committee
Published in: MASC Annual Report, 2019, Page(s) 32-33

Data management challenges for artificial intelligence in plant and agricultural research

Author(s): Hugh F. Williamson, Julia Brettschneider, Mario Caccamo, Robert P. Davey, Carole Goble, Paul J. Kersey, Sean May, Richard J. Morris, Richard Ostler, Tony Pridmore, Chris Rawlings, David Studholme, Sotirios A. Tsaftaris, Sabina Leonelli
Published in: F1000Research, Issue 10, 2021, Page(s) 324, ISSN 2046-1402
DOI: 10.12688/f1000research.52204.1