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BioNetIllustration: User centric illustrations of biological networks

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Publications

Overlap-free labeling of clustered networks based on Voronoi tessellation

Author(s): Hsiang-Yun Wu, Shigeo Takahashi, Rie Ishida
Published in: Journal of Visual Languages & Computing, Issue Volume 44, 2017, ISSN 1045-926X
DOI: 10.1016/j.jvlc.2017.09.008

Exploring the limits of complexity: A survey of empirical studies on graph visualisation

Author(s): Vahan Yoghourdjian, Daniel Archambault, Stephan Diehl, Tim Dwyer, Karsten Klein, Helen C. Purchase, Hsiang-Yun Wu
Published in: Visual Informatics, Issue 2/4, 2018, Page(s) 264-282, ISSN 2468-502X
DOI: 10.1016/j.visinf.2018.12.006

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments

Author(s): David Kouril, Ladislav Cmolik, Barbora Kozlikova, Hslanc-Yun Wu, Graham Johnson, David S. Goodsell, Arthur Olson, M. Eduard Groller, Ivan Viola
Published in: IEEE Transactions on Visualization and Computer Graphics, Issue 25/1, 2019, Page(s) 977-986, ISSN 1077-2626
DOI: 10.1109/tvcg.2018.2864491

Optimizing Stepwise Animation in Dynamic Set Diagrams

Author(s): Kazuyo Mizuno, Hsiang‐Yun Wu, Shigeo Takahashi, Takeo Igarashi
Published in: Computer Graphics Forum, Issue 38/3, 2019, Page(s) 13-24, ISSN 0167-7055
DOI: 10.1111/cgf.13668

Metabopolis: scalable network layout for biological pathway diagrams in urban map style

Author(s): Hsiang-Yun Wu, Martin Nöllenburg, Filipa L. Sousa, Ivan Viola
Published in: BMC Bioinformatics, Issue 20/1, 2019, ISSN 1471-2105
DOI: 10.1186/s12859-019-2779-4

Lost in Translation: Alignment of Mental Representations for Visual Analytics

Author(s): Daniel Archambault, Jessie Kennedy, Tatiana von Landesberger, Mark McCann, Fintan McGee, Benjamin Renoust, Hsiang-Yun Wu
Published in: Reimagining the Mental Map and Drawing Stability (NII Shonan Meeting Seminar 127), 2018

Mapifying the Genome

Author(s): Radu Jianu, Martin Krzywinski, Luana Micallef, Hsiang-Yun Wu
Published in: Scalable Set Visualizations (Dagstuhl Seminar 17332), 2018

From Cells to Atoms - Biological Information Visualization (in Chinese)

Author(s): Hsiang-Yun Wu, Haichao Miao, Ivan Viola
Published in: 2019

A Visual Comparison of Hand-Drawn and Machine-Generated Human Metabolic Pathways

Author(s): Hsiang-Yun Wu, Martin Nöllenburg, Ivan Viola
Published in: 2019

Graph Models for Biological Pathway Visualization: State of the Art and Future Challenges

Author(s): Hsiang-Yun Wu, Martin No ̈llenburg, Ivan Viola
Published in: 2019

A Survey on Computing Schematic Network Maps: The Challenge to Interactivity

Author(s): Hsiang-Yun Wu, Benjamin Niedermann, Shigeo Takahashi, Martin Nöllenburg
Published in: The 2nd Schematic Mapping Workshop, 2019

Interactive Exploded Views for Molecular Structures

Author(s): Maximillian Sbardellati, Haichao Miao, Hsiang-Yun Wu, Meister Eduard Gröller, Ivan Barisic, Ivan Viola
Published in: Proceedings of the 9th Eurographics Workshop on Visual Computing for Biology and Medicine, 2019

The Travel of a Metabolite

Author(s): Hsiang-Yun Wu, Martin Nöllenburg, Ivan Viola
Published in: PacificVis 2018 Data Story Telling Contest, 2019