European Network of Fourier-Transform Ion-Cyclotron-Resonance Mass Spectrometry Centers

Deliverables

(conception and realization of interviews, concept videos)

creation of the website page and content

Creation of twitter project account

Course material and school proceedings for the different AUS

Pdf files of the slides from the speakers. Report of the round-tables. Resp: FC-LISB and PRAG. two submissions planned at M18; M43.

Bid for the organization of the 2020 edition of the European FTMS conference (to be done at the 2018 edition)

Bid for the organization of the 2020 edition of the European FTMS conference (to be done at the 2018 edition) (CNRS-LILL – M3)

"Standardized protocols for the more common samples - iteration#2"

The protocol will describe the sample preparation, the tuning of the instrument and the data treatment in a format similar to a Nature protocole article.

Final report of the different End User Schools

The report will cover both the scientific content, the quality of exchanges with the speakers and between participants the quality of the teaching support and the accommodation. Resp: UEF and CNRS-LILL; two submissions planned at M9 and M31

EU_FT-ICR_MS handbook for the proposal submission

The handbook will explain how to submit a project, the mitigation procedure if a project is refused, the sample transportation rules and the ethical guidelines

Data/metadata specification

The Data/metadata specification will include a open file format for allowing expoitation of the TNA (WP1) data by an external user. The Data/metadata specification will include a list of mandatory items and a list of facultative items.

"18-month activity report of the EU_FT-ICR_MS network (Number of proposals, number of experiences.) - Iteration#2"

Number of proposals, number of experiences, number of acknowledgments, number of published papers, ranking of the journals.

Annual activity report of the EU_FT-ICR_MS network (Number of proposals, number of experiences..)

Number of proposals, number of experiences, number of acknowledgments, number of published papers, ranking of the journals.

"Standardized protocols for the more common samples - iteration#1"

The protocol will describe the sample preparation, the tuning of the instrument and the data treatment in a format similar to a Nature protocole article.

Course material and school proceedings for the different EUS

Pdf files of the slides from the speakers. Report of the round-tables. Resp: UEF and CNRS-LILL. two submissions planned at M9; M31.

Round-robin test results

The results of the Round-robin test results will consist of the anonymized results of all centers and of the statistic analysis of the data. Several submissions are planned M6, M12, M24, M36, M48.

Project handbook

internal governance, administrative and financial guidelines on the project management implementation

"Data management plan– Iterations#1 and #2"

The data management plan will be a cookbook giving all the good laboratory practices which will be mandatory for the academic partners for storing and archiving the data from TNA (WP1).

"Data management plan - iteration#3"

The data management plan will be a cookbook giving all the good laboratory practices which will be mandatory for the academic partners for storing and archiving the data from TNA (WP1).

Publications

In-Depth Analysis of Raw Bio-Oil and Its Hydrodeoxygenated Products for a Comprehensive Catalyst Performance Evaluation

Author(s): Idoia Hita, Tomás Cordero-Lanzac, Timo Kekäläinen, Ogechukwu Okafor, José Rodríguez-Mirasol, Tomás Cordero, Javier Bilbao, Janne Jänis, Pedro Castano
Published in: ACS Sustainable Chemistry & Engineering, Issue 8/50, 2020, Page(s) 18433-18445, ISSN 2168-0485
DOI: 10.1021/acssuschemeng.0c05533

Molecular Properties of Bare and Microhydrated Vitamin B5–Calcium Complexes

Author(s): Davide Corinti, Barbara Chiavarino, Debora Scuderi, Caterina Fraschetti, Antonello Filippi, Simonetta Fornarini, Maria Elisa Crestoni
Published in: International Journal of Molecular Sciences, Issue 22/2, 2021, Page(s) 692, ISSN 1422-0067
DOI: 10.3390/ijms22020692

Platinum-Triggered Bond-Cleavage of Pentynoyl Amide and N -Propargyl Handles for Drug-Activation

Author(s): Bruno L. Oliveira, Benjamin J. Stenton, V. B. Unnikrishnan, Cátia Rebelo de Almeida, João Conde, Magda Negrão, Felipe S. S. Schneider, Carlos Cordeiro, Miguel Godinho Ferreira, Giovanni F. Caramori, Josiel B. Domingos, Rita Fior, Gonçalo J. L. Bernardes
Published in: Journal of the American Chemical Society, Issue 142/24, 2020, Page(s) 10869-10880, ISSN 0002-7863
DOI: 10.1021/jacs.0c01622

Investigation of Island/Single-Core- and Archipelago/Multicore-Enriched Asphaltenes and Their Solubility Fractions by Thermal Analysis Coupled with High-Resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Author(s): Anika Neumann, Martha Liliana Chacón-Patiño, Ryan P. Rodgers, Christopher P. Rüger, Ralf Zimmermann
Published in: Energy & Fuels, 2020, ISSN 0887-0624
DOI: 10.1021/acs.energyfuels.0c03751

IR ion spectroscopy in a combined approach with MS/MS and IM-MS to discriminate epimeric anthocyanin glycosides (cyanidin 3-O-glucoside and -galactoside)

Author(s): Davide Corinti, Alessandro Maccelli, Maria Elisa Crestoni, Stefania Cesa, Deborah Quaglio, Bruno Botta, Cinzia Ingallina, Luisa Mannina, Aura Tintaru, Barbara Chiavarino, Simonetta Fornarini
Published in: International Journal of Mass Spectrometry, Issue 444, 2019, Page(s) 116179, ISSN 1387-3806
DOI: 10.1016/j.ijms.2019.116179

Regio- and Stereo-Specific Chemical Depolymerization of High Molecular Weight Polybutadiene and Polyisoprene for Their Analysis by High-Resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Comparison with Pyrolysis-Comprehensive Two-Dimensional Gas Chromatography/Mass Spectrometry, Atmospheric Solid Analysis Probe, Direct Inlet Probe-Atmospheric Pressure Chemical Ionization Mass

Author(s): Ziad Mahmoud, Fabrice Bray, Marie Hubert-Roux, Michel Sablier, Carlos Afonso, Christian Rolando
Published in: Analytical Chemistry, Issue 92/24, 2020, Page(s) 15736-15744, ISSN 0003-2700
DOI: 10.1021/acs.analchem.0c02650

MS-Based Approaches Enable the Structural Characterization of Transcription Factor/DNA Response Element Complex

Author(s): Slavata, Chmelík, Kavan, Filandrová, Fiala, Rosůlek, Mrázek, Kukačka, Vališ, Man, Miller, McIntyre, Fabris, Novák
Published in: Biomolecules, Issue 9/10, 2019, Page(s) 535, ISSN 2218-273X
DOI: 10.3390/biom9100535

Does deamidation affect inhibitory mechanisms towards amyloid protein aggregation?

Author(s): Yuko P. Y. Lam, Cookson K. C. Chiu, Christopher A. Wootton, Ian Hands-Portman, Meng Li, Mark P. Barrow, Peter B. O'Connor
Published in: Chemical Communications, Issue 56/68, 2020, Page(s) 9787-9790, ISSN 1359-7345
DOI: 10.1039/d0cc03548c

Real time monitoring of slow pyrolysis of polyethylene terephthalate (PET) by different mass spectrometric techniques

Author(s): Asma Dhahak, Christoph Grimmer, Anika Neumann, Christopher Rüger, Martin Sklorz, Thorsten Streibel, Ralf Zimmermann, Guillain Mauviel, Valérie Burkle-Vitzthum
Published in: Waste Management, Issue 106, 2020, Page(s) 226-239, ISSN 0956-053X
DOI: 10.1016/j.wasman.2020.03.028

Photoinduced damage of AsLOV2 domain is accompanied by increased singlet oxygen production due to flavin dissociation

Author(s): Martina Petrenčáková, František Filandr, Andrej Hovan, Ghazaleh Yassaghi, Petr Man, Tibor Kožár, Marc-Simon Schwer, Daniel Jancura, Andreas Plückthun, Petr Novák, Pavol Miškovský, Gregor Bánó, Erik Sedlák
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-020-60861-2

PDMS Curing Inhibition on 3D-Printed Molds: Why? Also, How to Avoid It?

Author(s): Bastien Venzac, Shanliang Deng, Ziad Mahmoud, Aufried Lenferink, Aurélie Costa, Fabrice Bray, Cees Otto, Christian Rolando, Séverine Le Gac
Published in: Analytical Chemistry, Issue 93/19, 2021, Page(s) 7180-7187, ISSN 0003-2700
DOI: 10.1021/acs.analchem.0c04944

How to Increase Further the Resolving Power of the Ultrahigh Magnetic Field FT ICR Instruments? The New Concept of the FT ICR Cell–the Open Dynamically Harmonized Cell as a Part of the Vacuum System Wall

Author(s): Evgeny Nikolaev, Anton Lioznov
Published in: Analytical Chemistry, Issue 93/3, 2021, Page(s) 1249-1253, ISSN 0003-2700
DOI: 10.1021/acs.analchem.0c03237

Chemico-Biological Characterization of Torpedino Di Fondi® Tomato Fruits: A Comparison with San Marzano Cultivar at Two Ripeness Stages

Author(s): Cinzia Ingallina, Alessandro Maccelli, Mattia Spano, Giacomo Di Matteo, Antonella Di Sotto, Anna Maria Giusti, Giuliana Vinci, Silvia Di Giacomo, Mattia Rapa, Salvatore Ciano, Caterina Fraschetti, Antonello Filippi, Giovanna Simonetti, Carlos Cordeiro, Marta Sousa Silva, Maria Elisa Crestoni, Anatoly P. Sobolev, Simonetta Fornarini, Luisa Mannina
Published in: Antioxidants, Issue 9/10, 2020, Page(s) 1027, ISSN 2076-3921
DOI: 10.3390/antiox9101027

Evaluation of major historical ICR cell designs using electric field simulations

Author(s): Evgeny Nikolaev, Anton Lioznov
Published in: Mass Spectrometry Reviews, 2020, ISSN 0277-7037
DOI: 10.1002/mas.21671

Mass shift in mass spectrometry imaging: comprehensive analysis and practical corrective workflow

Author(s): Andréa McCann, Sophie Rappe, Raphaël La Rocca, Mathieu Tiquet, Loïc Quinton, Gauthier Eppe, Johann Far, Edwin De Pauw, Christopher Kune
Published in: Analytical and Bioanalytical Chemistry, 2021, ISSN 1618-2642
DOI: 10.1007/s00216-021-03174-1

Phase relationships in two-dimensional mass spectrometry

Author(s): Maria A. van Agthoven, David P. A. Kilgour, Alice M. Lynch, Mark P. Barrow, Tomos E. Morgan, Christopher A. Wootton, Lionel Chiron, Marc-André Delsuc, Peter B. O’Connor
Published in: Journal of The American Society for Mass Spectrometry, Issue 30/12, 2019, Page(s) 2594-2607, ISSN 1044-0305
DOI: 10.1007/s13361-019-02308-1

Determination of the Aggregate Binding Site of Amyloid Protofibrils Using Electron Capture Dissociation Tandem Mass Spectrometry

Author(s): Yuko P. Y. Lam, Christopher A. Wootton, Ian Hands-Portman, Juan Wei, Cookson K. C. Chiu, I. Romero-Canelon, Frederik Lermyte, Mark P. Barrow, Peter B. O’Connor
Published in: Journal of the American Society for Mass Spectrometry, Issue 31/2, 2020, Page(s) 267-276, ISSN 1044-0305
DOI: 10.1021/jasms.9b00053

Integrating metabolomics and targeted gene expression to uncover potential biomarkers of fungal/oomycetes-associated disease susceptibility in grapevine

Author(s): Marisa Maia, António E. N. Ferreira, Rui Nascimento, Filipa Monteiro, Francisco Traquete, Ana P. Marques, Jorge Cunha, José E. Eiras-Dias, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-020-72781-2

Addressing the Molecular Mechanism of Longitudinal Lamin Assembly Using Chimeric Fusions

Author(s): Giel Stalmans, Anastasia V. Lilina, Pieter-Jan Vermeire, Jan Fiala, Petr Novák, Sergei V. Strelkov
Published in: Cells, Issue 9/7, 2020, Page(s) 1633, ISSN 2073-4409
DOI: 10.3390/cells9071633

Chemical Fingerprinting of Conifer Needle Essential Oils and Solvent Extracts by Ultrahigh-Resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Author(s): Omolara O. Mofikoya, Marko Mäkinen, and Janne Jänis
Published in: ACS Omega, 2020, ISSN 1054-1055
DOI: 10.1021/acsomega.0c00901

Zinc Binding to Tau Influences Aggregation Kinetics and Oligomer Distribution.

Author(s): A.P. Carapeto; Cláudio M. Gomes; Vukosava M. Torres; Carlos Cordeiro; Guilherme G. Moreira; Joana S. Cristóvão; Isabelle Landrieu; Mario S. Rodrigues
Published in: International Journal of Molecular Sciences, MDPI, 2019, Issue 10, 2019, ISSN 0000-0000
DOI: 10.3390/ijms20235979

Brain-Sparing Sympathofacilitators Mitigate Obesity without Adverse Cardiovascular Effects

Author(s): Inês Mahú, Andreia Barateiro, Eva Rial-Pensado, Noelia Martinéz-Sánchez, Sandra H. Vaz, Pedro M.S.D. Cal, Benjamin Jenkins, Tiago Rodrigues, Carlos Cordeiro, Miguel F. Costa, Raquel Mendes, Elsa Seixas, Mafalda M.A. Pereira, Nadiya Kubasova, Vitka Gres, Imogen Morris, Carolina Temporão, Marta Olivares, Yolanda Sanz, Albert Koulman, Francisco Corzana, Ana M. Sebastião, Miguel López, Gonçalo
Published in: Cell Metabolism, Issue 31/6, 2020, Page(s) 1120-1135.e7, ISSN 1550-4131
DOI: 10.1016/j.cmet.2020.04.013

Unprecedented Molecular Diversity Revealed in Meteoritic Insoluble Organic Matter: The Paris Meteorite’s Case

Author(s): Grégoire Danger, Alexander Ruf, Julien Maillard, Jasmine Hertzog, Vassilissa Vinogradoff, Philippe Schmitt-Kopplin, Carlos Afonso, Nathalie Carrasco, Isabelle Schmitz-Afonso, Louis Le Sergeant d’Hendecourt, Laurent Remusat
Published in: The Planetary Science Journal, Issue 1/3, 2020, Page(s) 55, ISSN 2632-3338
DOI: 10.3847/psj/abb60f

Quantitation of Thyroid Hormone Binding to Anti-Thyroxine Antibody Fab Fragment by Native Mass Spectrometry

Author(s): Senthil K. Thangaraj, Henri Arola, Antti Tullila, Tarja K. Nevanen, Juha Rouvinen, Janne Jänis
Published in: ACS Omega, Issue 4/20, 2019, Page(s) 18718-18724, ISSN 2470-1343
DOI: 10.1021/acsomega.9b02659

MIND: A Double-Linear Model To Accurately Determine Monoisotopic Precursor Mass in High-Resolution Top-Down Proteomics

Author(s): Frederik Lermyte, Piotr Dittwald, Jürgen Claesen, Geert Baggerman, Frank Sobott, Peter B. O’Connor, Kris Laukens, Jef Hooyberghs, Anna Gambin, Dirk Valkenborg
Published in: Analytical Chemistry, Issue 91/15, 2019, Page(s) 10310-10319, ISSN 0003-2700
DOI: 10.1021/acs.analchem.9b02682

Author(s): Julien Maillard, Isabelle Schmitz-Afonso, Thomas Gautier, Carlos Afonso, Nathalie Carrasco
Published in: Icarus, 2020, Page(s) 114181, ISSN 0019-1035
DOI: 10.1016/j.icarus.2020.114181

l -Cysteine Modified by S-Sulfation: Consequence on Fragmentation Processes Elucidated by Tandem Mass Spectrometry and Chemical Dynamics Simulations

Author(s): Veronica Macaluso, Debora Scuderi, Maria Elisa Crestoni, Simonetta Fornarini, Davide Corinti, Enzo Dalloz, Emilio Martinez-Nunez, William L. Hase, Riccardo Spezia
Published in: The Journal of Physical Chemistry A, Issue 123/17, 2019, Page(s) 3685-3696, ISSN 1089-5639
DOI: 10.1021/acs.jpca.9b01779

Infrared isomer-specific fragmentation for the identification of aminobutyric acid isomers separated by differential mobility spectrometry

Author(s): Yali Wang, Eskander Alhajji, Bernard Rieul, Francis Berthias, Philippe Maître
Published in: International Journal of Mass Spectrometry, Issue 443, 2019, Page(s) 16-21, ISSN 1387-3806
DOI: 10.1016/j.ijms.2019.05.014

Structural investigation of coal humic substances by selective isotopic exchange and high-resolution mass spectrometry

Author(s): Alexander Zherebker, Irina V. Perminova, Yury Kostyukevich, Alexey S. Kononikhin, Oleg Kharybin, Eugene Nikolaev
Published in: Faraday Discussions, Issue 218, 2019, Page(s) 172-190, ISSN 1359-6640
DOI: 10.1039/c9fd00002j

An integrated approach to study novel properties of a MALDI matrix (4-maleicanhydridoproton sponge) for MS imaging analyses

Author(s): Davide Corinti, Maria Elisa Crestoni, Simonetta Fornarini, Maren Pieper, Karsten Niehaus, Marco Giampà
Published in: Analytical and Bioanalytical Chemistry, Issue 411/4, 2019, Page(s) 953-964, ISSN 1618-2642
DOI: 10.1007/s00216-018-1531-7

The C-type lectin-like receptor Nkrp1b: Structural proteomics reveals features affecting protein conformation and interactions

Author(s): Lucie Hernychová, Michal Rosůlek, Alan Kádek, Václav Mareška, Josef Chmelík, Ljubina Adámková, Valéria Grobárová, Ondřej Šebesta, Zdeněk Kukačka, Kristián Skála, Vojtěch Spiwok, Jan Černý, Petr Novák
Published in: Journal of Proteomics, Issue 196, 2019, Page(s) 162-172, ISSN 1874-3919
DOI: 10.1016/j.jprot.2018.11.007

Structural analysis of heavy oil fractions after hydrodenitrogenation by high-resolution tandem mass spectrometry and ion mobility spectrometry

Author(s): Johann Le Maître, Marie Hubert-Roux, Benoît Paupy, Sabrina Marceau, Christopher P. Rüger, Carlos Afonso, Pierre Giusti
Published in: Faraday Discussions, Issue 218, 2019, Page(s) 417-430, ISSN 1359-6640
DOI: 10.1039/c8fd00239h

Structural and functional insights into the unique CBS–CP12 fusion protein family in cyanobacteria

Author(s): Claudia Hackenberg, Johanna Hakanpää, Fei Cai, Svetlana Antonyuk, Caroline Eigner, Sven Meissner, Mikko Laitaoja, Janne Jänis, Cheryl A. Kerfeld, Elke Dittmann, Victor S. Lamzin
Published in: Proceedings of the National Academy of Sciences, Issue 115/27, 2018, Page(s) 7141-7146, ISSN 0027-8424
DOI: 10.1073/pnas.1806668115

Early stage metabolic events associated with the establishment of Vitis vinifera – Plasmopara viticola compatible interaction

Author(s): Rui Nascimento, Marisa Maia, António E.N. Ferreira, Anabela B. Silva, Ana Ponces Freire, Carlos Cordeiro, Marta Sousa Silva, Andreia Figueiredo
Published in: Plant Physiology and Biochemistry, Issue 137, 2019, Page(s) 1-13, ISSN 0981-9428
DOI: 10.1016/j.plaphy.2019.01.026

Screening hydrotreating catalysts for the valorization of a light cycle oil/scrap tires oil blend based on a detailed product analysis

Author(s): Roberto Palos, Timo Kekäläinen, Frank Duodu, Alazne Gutiérrez, José M. Arandes, Janne Jänis, Pedro Castaño
Published in: Applied Catalysis B: Environmental, Issue 256, 2019, Page(s) 117863, ISSN 0926-3373
DOI: 10.1016/j.apcatb.2019.117863

A new optimization strategy for MALDI FTICR MS tissue analysis for untargeted metabolomics using experimental design and data modeling

Author(s): Justine Ferey, Florent Marguet, Annie Laquerrière, Stéphane Marret, Isabelle Schmitz-Afonso, Soumeya Bekri, Carlos Afonso, Abdellah Tebani
Published in: Analytical and Bioanalytical Chemistry, Issue 411/17, 2019, Page(s) 3891-3903, ISSN 1618-2642
DOI: 10.1007/s00216-019-01863-6

Vitis vinifera ‘Pinot noir’ leaves as a source of bioactive nutraceutical compounds

Author(s): Marisa Maia, António E. N. Ferreira, Gonçalo Laureano, Ana Patrícia Marques, Vukosava M. Torres, Anabela Bernardes Silva, Ana Rita Matos, Carlos Cordeiro, Andreia Figueiredo, Marta Sousa Silva
Published in: Food & Function, Issue 10/7, 2019, Page(s) 3822-3827, ISSN 2042-650X
DOI: 10.1039/c8fo02328j

Rapid visualization of chemically related compounds using Kendrick mass defect as a filter in mass spectrometry imaging

Author(s): Christopher Kune, Andrea McCann, Raphael La Rocca, Anthony Arguelles Arias, Mathieu Tiquet, Daan Van Kruining, Pilar Martinez-Martinez, Marc Ongena, Gauthier Eppe, Loïc Quinton, Johann Far, Edwin De Pauw
Published in: Analytical Chemistry, 2019, ISSN 0003-2700
DOI: 10.1021/acs.analchem.9b03333

Uncovering markers for downy mildew resistance in grapevine through mass spectrometry-based metabolomics

Author(s): Marisa Maia, António E. N. Ferreira, Ana P. Marques, Joana Figueiredo, Ana Ponces Freire, Carlos Cordeiro, Andreia Figueiredo, and Marta Sousa Silva
Published in: Revista de Ciências Agrárias, Issue Volume 42, 2018, Page(s) 48-53, ISSN 0871-018X
DOI: 10.19084/rca.17066

Binding Motifs in the Naked Complexes of Target Amino Acids with an Excerpt of Antitumor Active Biomolecule: An Ion Vibrational Spectroscopy Assay

Author(s): Barbara Chiavarino, Rajeev K. Sinha, Maria Elisa Crestoni, Davide Corinti, Antonello Filippi, Caterina Fraschetti, Debora Scuderi, Philippe Maitre, Simonetta Fornarini
Published in: Chemistry – A European Journal, Issue 27/7, 2021, Page(s) 2348-2360, ISSN 0947-6539
DOI: 10.1002/chem.202003555

Molecular Mechanism of LEDGF/p75 Dimerization

Author(s): Magadalena Hořejší Zdeněk Kukačka Petr Novák Michael Kugler Jiří Brynda Jan DeRijck Frauke Christ Zeger Debyser Václav Veverka
Published in: Structure, Issue 28/12, 2020, Page(s) 1288-1299.e7, ISSN 0000-0000
DOI: 10.1016/j.str.2020.08.012

Applications of Infrared Multiple Photon Dissociation (IRMPD) to the Detection of Posttranslational Modifications

Author(s): Philippe Maitre, Debora Scuderi, Davide Corinti, Barbara Chiavarino, Maria Elisa Crestoni, Simonetta Fornarini
Published in: Chemical Reviews, Issue 120/7, 2020, Page(s) 3261-3295, ISSN 0009-2665
DOI: 10.1021/acs.chemrev.9b00395

Motif orientation matters: structural characterization of TEAD1 recognition of genomic DNA

Author(s): Růžena Filandrová, Karel Vališ, Jiří Černý, Josef Chmelík, Lukáš Slavata, Jan Fiala, Michal Rosůlek, Daniel Kavan, Petr Man, Tomáš Chum, Marek Cebecauer, Daniele Fabris, Petr Novák
Published in: Structure, 2020, ISSN 0000-0000
DOI: 10.1016/j.str.2020.11.018

Short-lived intermediates (encounter complexes) in cisplatin ligand exchange elucidated by infrared ion spectroscopy

Author(s): Davide Corinti, Cecilia Coletti, Nazzareno Re, Roberto Paciotti, Philippe Maître, Barbara Chiavarino, Maria Elisa Crestoni, Simonetta Fornarini
Published in: International Journal of Mass Spectrometry, Issue 435, 2019, Page(s) 7-17, ISSN 1387-3806
DOI: 10.1016/j.ijms.2018.10.012

Structural basis of heterotetrameric assembly and disease mutations in the human cis-prenyltransferase complex

Author(s): Michal Lisnyansky Bar-El, Pavla Vaňková, Adva Yeheskel, Luba Simhaev, Hamutal Engel, Petr Man, Yoni Haitin, Moshe Giladi
Published in: Nature Communications, Issue 11/1, 2020, ISSN 2041-1723
DOI: 10.1038/s41467-020-18970-z

A Dynamic Core in Human NQO1 Controls the Functional and Stability Effects of Ligand Binding and Their Communication across the Enzyme Dimer.

Author(s): Eduardo Salido; David J. Timson; Pavla Vankova; Petr Man; Angel L. Pey
Published in: Biomolecules, Issue 5, 2019, ISSN 0000-0000
DOI: 10.20944/preprints201910.0281.v1

Investigation of Aging Processes in Bitumen at the Molecular Level with High-Resolution Fourier-Transform Ion Cyclotron Mass Spectrometry and Two-Dimensional Gas Chromatography Mass Spectrometry

Author(s): Anika Neumann, Uwe Käfer, Thomas Gröger, Thomas Wilharm, Ralf Zimmermann, Christopher P. Rüger
Published in: Energy & Fuels, Issue 34/9, 2020, Page(s) 10641-10654, ISSN 0887-0624
DOI: 10.1021/acs.energyfuels.0c01242

Deciphering the structure of itaconate‐based unsaturated polyester resins by high resolution mass spectrometry

Author(s): Julien Molina, Ziad Mahmoud, Marie Hubert‐Roux, Nathalie Azaroual, Carlos Afonso, Anne‐Sophie Schuller, Christian Rolando
Published in: Polymer International, Issue 69/11, 2020, Page(s) 1140-1151, ISSN 0959-8103
DOI: 10.1002/pi.6049

Solution Condition-Dependent Formation of Gas-Phase Protomers of Alpha-Synuclein in Electrospray Ionization

Author(s): Frederik Lermyte, Alina Theisen, Peter B. O’Connor
Published in: Journal of the American Society for Mass Spectrometry, Issue 32/1, 2021, Page(s) 364-372, ISSN 1044-0305
DOI: 10.1021/jasms.0c00373

Insights into Cisplatin Binding to Uracil and Thiouracils from IRMPD Spectroscopy and Tandem Mass Spectrometry

Author(s): Davide Corinti, Maria Elisa Crestoni, Barbara Chiavarino, Simonetta Fornarini, Debora Scuderi, Jean-Yves Salpin
Published in: Journal of the American Society for Mass Spectrometry, Issue 31/4, 2020, Page(s) 946-960, ISSN 1044-0305
DOI: 10.1021/jasms.0c00006

Structural Analysis of Neutral Nitrogen Compounds Refractory to the Hydrodenitrogenation Process of Heavy Oil Fractions by High-Resolution Tandem Mass Spectrometry and Ion Mobility–Mass Spectrometry

Author(s): Johann Le Maître, Benoit Paupy, Marie Hubert-Roux, Sabrina Marceau, Christopher Rüger, Carlos Afonso, Pierre Giusti
Published in: Energy & Fuels, Issue 34/8, 2020, Page(s) 9328-9338, ISSN 0887-0624
DOI: 10.1021/acs.energyfuels.0c01160

Facile Determination of Phosphorylation Sites in Peptides Using Two-Dimensional Mass Spectrometry

Author(s): Johanna Paris, Tomos E. Morgan, Christopher A. Wootton, Mark P. Barrow, John O’Hara, Peter B. O’Connor
Published in: Analytical Chemistry, Issue 92/10, 2020, Page(s) 6817-6821, ISSN 0003-2700
DOI: 10.1021/acs.analchem.0c00884

Development of hypoallergenic variants of the major horse allergen Equ c 1 for immunotherapy by rational structure based engineering

Author(s): Jaana Haka, Merja H. Niemi, Pekka Mattila, Janne Jänis, Kristiina Takkinen, Juha Rouvinen
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
DOI: 10.1038/s41598-019-56812-1

Early modification of cytochrome c by hydrogen peroxide triggers its fast degradation

Author(s): Nataša Tomášková, Petr Novák, Tibor Kožár, Martina Petrenčáková, Daniel Jancura, Ghazaleh Yassaghi, Petr Man, Erik Sedlák
Published in: International Journal of Biological Macromolecules, Issue 174, 2021, Page(s) 413-423, ISSN 0141-8130
DOI: 10.1016/j.ijbiomac.2021.01.189

Comparison of Silica and Cellulose Stationary Phases to Analyze Bitumen by High-Performance Thin-Layer Chromatography Coupled to Laser Desorption Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Author(s): Oscar Lacroix-Andrivet, Marie Hubert-Roux, Anna Luiza Mendes Siqueira, Yang Bai, Carlos Afonso
Published in: Energy & Fuels, Issue 34/8, 2020, Page(s) 9296-9303, ISSN 0887-0624
DOI: 10.1021/acs.energyfuels.0c00709

Fourier transform ion cyclotron resonance mass spectrometry for the analysis of molecular composition and batch‐to‐batch consistency of plant‐derived polyphenolic ligands developed for biomedical application

Author(s): Alexander Ya. Zherebker, Gleb D. Rukhovich, Oleg N. Kharybin, Elena I. Fedoros, Irina V. Perminova, Evgeny N. Nikolaev
Published in: Rapid Communications in Mass Spectrometry, Issue 34/18, 2020, ISSN 0951-4198
DOI: 10.1002/rcm.8850

Conserved cysteine dioxidation enhances membrane interaction of human Cl − intracellular channel 5

Author(s): Alisa Ferofontov, Pavla Vankova, Petr Man, Moshe Giladi, Yoni Haitin
Published in: The FASEB Journal, Issue 34/8, 2020, Page(s) 9925-9940, ISSN 0892-6638
DOI: 10.1096/fj.202000399r

Thermokinetic Analysis of Protein Subunit Exchange by Variable-Temperature Native Mass Spectrometry

Author(s): Senthil K. Thangaraj, Salman James, Juha Rouvinen, Janne Jänis
Published in: Biochemistry, Issue 58/50, 2019, Page(s) 5025-5029, ISSN 0006-2960
DOI: 10.1021/acs.biochem.9b00911

Influence of cross-linker polarity on selectivity towards lysine side chains

Author(s): Zdeněk Kukačka; Jan Fiala; Petr Novák
Published in: http://www.preprints.org/manuscript/202002.0088/v1, Issue 10, 2020, ISSN 0000-0000
DOI: 10.20944/preprints202002.0088.v1

Nanoemulsions of Satureja montana Essential Oil: Antimicrobial and Antibiofilm Activity against Avian Escherichia coli Strains

Author(s): Federica Rinaldi, Linda Maurizi, Antonietta Lucia Conte, Massimiliano Marazzato, Alessandro Maccelli, Maria Elisa Crestoni, Patrizia Nadia Hanieh, Jacopo Forte, Maria Pia Conte, Carlo Zagaglia, Catia Longhi, Carlotta Marianecci, Maria Grazia Ammendolia, Maria Carafa
Published in: Pharmaceutics, Issue 13/2, 2021, Page(s) 134, ISSN 1999-4923
DOI: 10.3390/pharmaceutics13020134

Phase relationships in two-dimensional mass spectrometry

Author(s): Maria A. van Agthoven; Marc-André Delsuc; Tomos E. Morgan; David P. A. Kilgour; David P. A. Kilgour; Alice M. Lynch; Alice M. Lynch; Peter B. O’Connor; Mark P. Barrow; Christopher A. Wootton; Lionel Chiron
Published in: ISSN: 1044-0305, Issue 9, 2019, ISSN 0000-0000
DOI: 10.1007/s13361-019-02308-1

Comprehensive high resolution mass spectrometric evolved gas analysis in the context of Petroleomics: Analysis of bitumen, heavy crude oils and asphaltenes

Author(s): Christopher P. Rüger, Anika Neumann, Christoph Grimmer, Uwe Käfer, Thomas Gröger, Thorsten Streibel, Martin Sklorz, Ralf Zimmermann
Published in: EFTMS Conference, Issue 23.4. - 27.4.2018, 2018

Comprehensive mass spectrometric evolved gas analysis in the context of petroleomics

Author(s): Christopher P. Rüger, Anika Neumann, Christoph Grimmer, Uwe Käfer, Martin Sklorz, Ralf Zimmermann
Published in: DGMS Conference, Issue 11.3. - 15.3.2018, 2018

Comparison of Xe/Kr atmospheric pressure photo ionisation (APPI) to atmospheric pressure chemical ionisation for the analysis of complex mixtures

Author(s): Anika Neumann, Christopher P. Rüger, Martin Sklorz, Ralf Zimmermann
Published in: DGMS Conference, Issue 11.3. - 15.3.2018, 2018

Comparison of Xe/Kr atmospheric pressure photo ionisation (APPI) to atmospheric pressure chemical ionisation for the analysis of complex petrochemical mixtures

Author(s): Anika Neumann, Christopher P. Rüger, Martin Sklorz, Ralf Zimmermann
Published in: EFTMS Conference, Issue 23.4. - 27.4.2018, 2018

"""Structural investigation of natural organic matter using direct fractionation and selective isotopic labeling coupled to fticr ms"" "

Author(s): """Alexander Zherebker, Yury Kostyukevich, Evgeny Shirshin, Oleg Kharybin, Alexey Kononikhin, Irina V Perminova, Evgeny Nikolaev"" "
Published in: IMSC Conference, Issue 26.08-31.08 2018, 2018

Ion source multiplexing on a single mass spectrometer

Author(s): Yury Kostyukevich, Alexander Zherebker, Evgeny Nikolaev
Published in: IMSC Conference, Issue 26.08-31.08 2018, 2018

Characterization of hydroxymethylbilane synthase and its acute intermittent porphyria associated mutants by Fourier transform ion cyclotron resonance mass spectrometry

Author(s): Janne Jänis, Helene J. Bustad, Juha Kallio, Mikko Laitaoja, Karen Toska, Inari Kursula and Aurora Martinez
Published in: Proceedings of the ASMS conference on Mass Spectrometry, Issue 2018, 2018

A GA for non-uniform sampling harmonic analysis

Author(s): Ulviya Abdulkarimova, Igor Santos Peretta, Anna Ouskova Leonteva, Younes Monjid, Rabih Amhaz, Marc Haegelin, Pierre Collet, Christian Rolando
Published in: Proceedings of the 2020 Genetic and Evolutionary Computation Conference Companion, 2020, Page(s) 253-254
DOI: 10.1145/3377929.3390008

Metabolomics in Crop Research – Current and Emerging Methodologies

Author(s): Sousa Silva, M., Figueiredo, A., Roessner, U., Cordeiro, C.,
Published in: 2019
DOI: 10.3389/978-2-88963-158-2

Software

Metabolinks: a Python package for high-resolution-MS metabolomics data analysis

Author(s): Ferreira, António E.N.; Traquete, Francisco
DOI: 10.5281/zenodo.5336950; 10.5281/zenodo.5336951
Publisher: Zenodo

Metabolinks: a Python package for high-resolution-MS metabolomics data analysis

Author(s): Ferreira, António E.N.; Traquete, Francisco
DOI: oai:zenodo.org:5336951; 10.5281/zenodo.5336951
Publisher: Zenodo

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