Single Molecule Analytical Raman Tools based on DNA nanostructures

Project Information

SMART-DNA

Grant agreement ID: 772752

DOI 10.3030/772752

Project closed

EC signature date 15 January 2018

Start date 1 April 2018

End date 31 March 2023

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 996 476,00

EU contribution € 1 996 476,00

Coordinated by

UNIVERSITAET POTSDAM
Germany

Publications

Peer reviewed articles (25)

Lab-on-a-DNA origami: nanoengineered single-molecule platforms

Author(s): Sergio Kogikoski; João Ameixa; Amr Mostafa; Ilko Bald
Published in: Chemical Communications, Issue 59, 2023, Page(s) 4726, ISSN 1359-7345
Publisher: Royal Society of Chemistry
DOI: 10.1039/d3cc00718a

Spatial Separation of Plasmonic Hot-Electron Generation and a Hydrodehalogenation Reaction Center Using a DNA Wire

Author(s): Sergio Kogikoski Jr., Anushree Dutta, Ilko Bald
Published in: ACS Nano, Issue 15, 2021, Page(s) 20562, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.1c09176

A Versatile DNA Origami-Based Plasmonic Nanoantenna for Label-Free Single-Molecule Surface-Enhanced Raman Spectroscopy

Author(s): Kosti Tapio, Amr Mostafa, Yuya Kanehira, Antonio Suma, Anushree Dutta, Ilko Bald
Published in: ACS Nano, Issue 15/4, 2021, Page(s) 7065-7077, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.1c00188

Plasmonic reactivity of halogen thiophenols on gold nanoparticles studied by SERS and XPS

Author(s): Robin Schürmann, Anushree Dutta, Kenny Ebel, Kosti Tapio, Aleksandar R. Milosavljević, Ilko Bald
Published in: Journal of Chemical Physics, Issue 157, 2022, Page(s) 084708, ISSN 0021-9606
Publisher: American Institute of Physics
DOI: 10.1063/5.0098110

The electronic structure of the metal–organic interface of isolated ligand coated gold nanoparticles

Author(s): Robin Schürmann; Evgenii Titov; Kenny Ebel; Sergio Kogikoski; Amr Mostafa; Peter Saalfrank; Aleksandar R. Milosavljević; Ilko Bald
Published in: Nanoscale Advances, Issue 4, 2022, Page(s) 1599, ISSN 2516-0230
Publisher: RSC
DOI: 10.1039/d1na00737h

Influence of Different Salts on the G-Quadruplex Structure Formed from the Reversed Human Telomeric DNA Sequence

Author(s): Lydia Olejko, Anushree Dutta, Kosar Shahsavar, Ilko Bald
Published in: International Journal of Molecular Sciences, Issue 23, 2022, Page(s) 12206, ISSN 1000-9035
Publisher: mdpi
DOI: 10.3390/ijms232012206

The potential of DNA origami to build multifunctional materials

Author(s): Kosti Tapio, Ilko Bald
Published in: Multifunctional Materials, Issue 3/3, 2020, Page(s) 032001, ISSN 2399-7532
Publisher: IOP Publishing
DOI: 10.1088/2399-7532/ab80d5

Quantum Yield of DNA Strand Breaks under Photoexcitation of a Molecular Ruby

Author(s): Cui Wang; Kenny Ebel; Katja Heinze; Ute Resch‐Genger; Ilko Bald
Published in: Chemistry - A European Journal, Issue 29, 2023, Page(s) e202203719, ISSN 0947-6539
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/chem.202203719

The Role of Structural Flexibility in Plasmon-Driven Coupling Reactions: Kinetic Limitations in the Dimerization of Nitro-Benzenes

Author(s): Wouter Koopman; Evgenii Titov; Radwan M. Sarhan; Radwan M. Sarhan; Tina Gaebel; Robin Schürmann; Amr Mostafa; Sergio Kogikoski; Alexandar R. Milosavljevic; Felix Stete; Ferenc Liebig; Clemens N. Z. Schmitt; Joachim Koetz; Ilko Bald; Peter Saalfrank; Matias Bargheer; Matias Bargheer
Published in: Advanced Materials Interfaces, Issue 8, 2021, Page(s) 2101344, ISSN 0935-9648
Publisher: United Nations Industrial Developement Organization
DOI: 10.1002/admi.202101344

Plasmon mediated decomposition of brominated nucleobases on silver nanoparticles – A surface enhanced Raman scattering (SERS) study

Author(s): Anushree Dutta, Robin Schürmann, Ilko Bald
Published in: The European Physical Journal D, Issue 74/1, 2020, ISSN 1434-6060
Publisher: Springer Verlag
DOI: 10.1140/epjd/e2019-100115-1

Length and Energy Dependence of Low-Energy Electron-Induced Strand Breaks in Poly(A) DNA

Author(s): Kenny Ebel, Ilko Bald
Published in: International Journal of Molecular Sciences, Issue 21/1, 2020, Page(s) 111, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21010111

Colloidal black gold with broadband absorption for plasmon-assisted crosslinking of thiolated diazonium compound

Author(s): Radwan M. Sarhan; Sergio Kogikoski Jr; Robin M. Schürmann; Yuhang Zhao; Andreas Krause; Bernd Schmidt; Ilko Bald; Yan Lu
Published in: The Journal of Physical Chemistry C, Issue 127, 2023, Page(s) 10051-10061, ISSN 1932-7447
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcc.3c00067

Kinetics and Mechanism of Plasmon-Driven Dehalogenation Reaction of Brominated Purine Nucleobases on Ag and Au.

Author(s): Anushree Dutta; Robin Schürmann; Sergio Kogikoski; Niclas S. Mueller; Stephanie Reich; Ilko Bald
Published in: ACS Catalysis, Issue 11, 2021, Page(s) 8370, ISSN 2155-5435
Publisher: American Chemical Society
DOI: 10.1021/acscatal.1c01851

Poly-N-isopropylacrylamide colloidal arrays as templates for droplet-assisted fabrication of plasmonic nanostructure patterns

Author(s): Ruth Fabiola Balderas‐Valadez; Alessandro Nagel; Yuya Kanehira; Ilko Bald; Claudia Pacholski
Published in: Advanced Materials Technologies, Issue 24, 2023, Page(s) 2201717, ISSN 2365-709X
Publisher: Wiley
DOI: 10.26434/chemrxiv-2022-5382g

Interaction of 4-nitrothiophenol with low energy electrons: Implications for plasmon mediated reactions

Author(s): Robin Schürmann, Thomas F. M. Luxford, Ivo S. Vinklárek, Jaroslav Kočišek, Mateusz Zawadzki, Ilko Bald
Published in: The Journal of Chemical Physics, Issue 153/10, 2020, Page(s) 104303, ISSN 0021-9606
Publisher: American Institute of Physics
DOI: 10.1063/5.0018784

Raman Enhancement of Nanoparticle Dimers Self-Assembled Using DNA Origami Nanotriangles

Author(s): Sergio Kogikoski, Kosti Tapio, Robert Edler von Zander, Peter Saalfrank, Ilko Bald
Published in: Molecules, Issue 26/6, 2021, Page(s) 1684, ISSN 1420-3049
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26061684

Amorphous Carbon Generation as a Photocatalytic Reaction on DNA-Assembled Gold and Silver Nanostructures

Author(s): Christian Heck, Yuya Kanehira, Janina Kneipp, Ilko Bald
Published in: Molecules, Issue 24/12, 2019, Page(s) 2324, ISSN 1420-3049
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules24122324

A new reporter design based on DNA origami nanostructures for quantification of short oligonucleotides using microbeads

Author(s): Youngeun Choi, Carsten Schmidt, Philip Tinnefeld, Ilko Bald, Stefan Rödiger
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-41136-x

Role of Valence Band States and Plasmonic Enhancement in Electron-Transfer-Induced Transformation of Nitrothiophenol

Author(s): Robin Schürmann, Kenny Ebel, Christophe Nicolas, Aleksandar R. Milosavljević, Ilko Bald
Published in: The Journal of Physical Chemistry Letters, Issue 10/11, 2019, Page(s) 3153-3158, ISSN 1948-7185
Publisher: American Chemical Society
DOI: 10.1021/acs.jpclett.9b00848

Analytical epigenetics: single-molecule optical detection of DNA and histone modifications

Author(s): Christian Heck, Yael Michaeli, Ilko Bald, Yuval Ebenstein
Published in: Current Opinion in Biotechnology, Issue 55, 2019, Page(s) 151-158, ISSN 0958-1669
Publisher: Elsevier BV
DOI: 10.1016/j.copbio.2018.09.006

Folding DNA into origami nanostructures enhances resistance to ionizing radiation.

Author(s): Leo Sala; Agnes Zerolová; Alvaro Rodriguez; Dan Reimitz; Marie Davídková; Kenny Ebel; Ilko Bald; Jaroslav Kočišek
Published in: Nanoscale, Issue 13, 2021, Page(s) 11197, ISSN 2040-3364
Publisher: Royal Society of Chemistry
DOI: 10.1039/d1nr02013g

Experimental and Theoretical Studies of Dissociative Electron Attachment to Metabolites Oxaloacetic and Citric Acids

Author(s): J. Kopyra, P. Wierzbicka, A. Tulwin, G. Thiam, I. Bald, F. Rabilloud and H. Abdoul-Carime
Published in: International Journal of Molecular Sciences, Issue 22, 2021, Page(s) 7676, ISSN 1000-9035
Publisher: mdpi
DOI: 10.3390/ijms22147676

Microscopic Understanding of Reaction Rates Observed in Plasmon Chemistry of Nanoparticle–Ligand Systems

Author(s): Robin Schürmann; Alessandro Nagel; Sabrina Juergensen; Anisha Pathak; Stephanie Reich; Claudia Pacholski; Ilko Bald
Published in: The Journal of Physical Chemistry C, Issue 126, 2022, Page(s) 5333, ISSN 1932-7447
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcc.2c00278

Low-Energy (5–20 eV) Electron-Induced Single and Double Strand Breaks in Well-Defined DNA Sequences

Author(s): Kenny Ebel; Ilko Bald
Published in: The Journal of Physical Chemistry Letters, Issue 13, 2022, Page(s) 4871, ISSN 1948-7185
Publisher: American Chemical Society
DOI: 10.1021/acs.jpclett.2c00684

Molecular states and spin crossover of hemin studied by DNA origami enabled single-molecule surface-enhanced Raman scattering

Author(s): Anushree Dutta; Kosti Tapio; Antonio Suma; Amr Mostafa; Yuya Kanehira; Vincenzo Carnevale; Giovanni Bussi; Ilko Bald
Published in: Nanoscale, Issue 14, 2022, Page(s) 16467, ISSN 2040-3364
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2nr03664a