Single Molecule Analytical Raman Tools based on DNA nanostructures

Project Information

SMART-DNA

Grant agreement ID: 772752

DOI 10.3030/772752

Project closed

EC signature date 15 January 2018

Start date 1 April 2018

End date 31 March 2023

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 996 476,00

EU contribution € 1 996 476,00

Coordinated by

UNIVERSITAET POTSDAM
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (25)

Lab-on-a-DNA origami: nanoengineered single-molecule platforms

Author(s): Sergio Kogikoski; João Ameixa; Amr Mostafa; Ilko Bald
Published in: Chemical Communications, Issue 59, 2023, Page(s) 4726, ISSN 1359-7345
Publisher: Royal Society of Chemistry
DOI: 10.1039/d3cc00718a

Spatial Separation of Plasmonic Hot-Electron Generation and a Hydrodehalogenation Reaction Center Using a DNA Wire

Author(s): Sergio Kogikoski Jr., Anushree Dutta, Ilko Bald
Published in: ACS Nano, Issue 15, 2021, Page(s) 20562, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.1c09176

A Versatile DNA Origami-Based Plasmonic Nanoantenna for Label-Free Single-Molecule Surface-Enhanced Raman Spectroscopy

Author(s): Kosti Tapio, Amr Mostafa, Yuya Kanehira, Antonio Suma, Anushree Dutta, Ilko Bald
Published in: ACS Nano, Issue 15/4, 2021, Page(s) 7065-7077, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.1c00188

Plasmonic reactivity of halogen thiophenols on gold nanoparticles studied by SERS and XPS

Author(s): Robin Schürmann, Anushree Dutta, Kenny Ebel, Kosti Tapio, Aleksandar R. Milosavljević, Ilko Bald
Published in: Journal of Chemical Physics, Issue 157, 2022, Page(s) 084708, ISSN 0021-9606
Publisher: American Institute of Physics
DOI: 10.1063/5.0098110

The electronic structure of the metal–organic interface of isolated ligand coated gold nanoparticles

Author(s): Robin Schürmann; Evgenii Titov; Kenny Ebel; Sergio Kogikoski; Amr Mostafa; Peter Saalfrank; Aleksandar R. Milosavljević; Ilko Bald
Published in: Nanoscale Advances, Issue 4, 2022, Page(s) 1599, ISSN 2516-0230
Publisher: RSC
DOI: 10.1039/d1na00737h

Influence of Different Salts on the G-Quadruplex Structure Formed from the Reversed Human Telomeric DNA Sequence

Author(s): Lydia Olejko, Anushree Dutta, Kosar Shahsavar, Ilko Bald
Published in: International Journal of Molecular Sciences, Issue 23, 2022, Page(s) 12206, ISSN 1000-9035
Publisher: mdpi
DOI: 10.3390/ijms232012206

The potential of DNA origami to build multifunctional materials

Author(s): Kosti Tapio, Ilko Bald
Published in: Multifunctional Materials, Issue 3/3, 2020, Page(s) 032001, ISSN 2399-7532
Publisher: IOP Publishing
DOI: 10.1088/2399-7532/ab80d5

Quantum Yield of DNA Strand Breaks under Photoexcitation of a Molecular Ruby

Author(s): Cui Wang; Kenny Ebel; Katja Heinze; Ute Resch‐Genger; Ilko Bald
Published in: Chemistry - A European Journal, Issue 29, 2023, Page(s) e202203719, ISSN 0947-6539
Publisher: John Wiley & Sons Ltd.
DOI: 10.1002/chem.202203719

The Role of Structural Flexibility in Plasmon-Driven Coupling Reactions: Kinetic Limitations in the Dimerization of Nitro-Benzenes

Author(s): Wouter Koopman; Evgenii Titov; Radwan M. Sarhan; Radwan M. Sarhan; Tina Gaebel; Robin Schürmann; Amr Mostafa; Sergio Kogikoski; Alexandar R. Milosavljevic; Felix Stete; Ferenc Liebig; Clemens N. Z. Schmitt; Joachim Koetz; Ilko Bald; Peter Saalfrank; Matias Bargheer; Matias Bargheer
Published in: Advanced Materials Interfaces, Issue 8, 2021, Page(s) 2101344, ISSN 0935-9648
Publisher: United Nations Industrial Developement Organization
DOI: 10.1002/admi.202101344

Plasmon mediated decomposition of brominated nucleobases on silver nanoparticles – A surface enhanced Raman scattering (SERS) study

Author(s): Anushree Dutta, Robin Schürmann, Ilko Bald
Published in: The European Physical Journal D, Issue 74/1, 2020, ISSN 1434-6060
Publisher: Springer Verlag
DOI: 10.1140/epjd/e2019-100115-1

Length and Energy Dependence of Low-Energy Electron-Induced Strand Breaks in Poly(A) DNA

Author(s): Kenny Ebel, Ilko Bald
Published in: International Journal of Molecular Sciences, Issue 21/1, 2020, Page(s) 111, ISSN 1422-0067
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms21010111

Colloidal black gold with broadband absorption for plasmon-assisted crosslinking of thiolated diazonium compound

Author(s): Radwan M. Sarhan; Sergio Kogikoski Jr; Robin M. Schürmann; Yuhang Zhao; Andreas Krause; Bernd Schmidt; Ilko Bald; Yan Lu
Published in: The Journal of Physical Chemistry C, Issue 127, 2023, Page(s) 10051-10061, ISSN 1932-7447
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcc.3c00067

Kinetics and Mechanism of Plasmon-Driven Dehalogenation Reaction of Brominated Purine Nucleobases on Ag and Au.

Author(s): Anushree Dutta; Robin Schürmann; Sergio Kogikoski; Niclas S. Mueller; Stephanie Reich; Ilko Bald
Published in: ACS Catalysis, Issue 11, 2021, Page(s) 8370, ISSN 2155-5435
Publisher: American Chemical Society
DOI: 10.1021/acscatal.1c01851

Poly-N-isopropylacrylamide colloidal arrays as templates for droplet-assisted fabrication of plasmonic nanostructure patterns

Author(s): Ruth Fabiola Balderas‐Valadez; Alessandro Nagel; Yuya Kanehira; Ilko Bald; Claudia Pacholski
Published in: Advanced Materials Technologies, Issue 24, 2023, Page(s) 2201717, ISSN 2365-709X
Publisher: Wiley
DOI: 10.26434/chemrxiv-2022-5382g

Interaction of 4-nitrothiophenol with low energy electrons: Implications for plasmon mediated reactions

Author(s): Robin Schürmann, Thomas F. M. Luxford, Ivo S. Vinklárek, Jaroslav Kočišek, Mateusz Zawadzki, Ilko Bald
Published in: The Journal of Chemical Physics, Issue 153/10, 2020, Page(s) 104303, ISSN 0021-9606
Publisher: American Institute of Physics
DOI: 10.1063/5.0018784

Raman Enhancement of Nanoparticle Dimers Self-Assembled Using DNA Origami Nanotriangles

Author(s): Sergio Kogikoski, Kosti Tapio, Robert Edler von Zander, Peter Saalfrank, Ilko Bald
Published in: Molecules, Issue 26/6, 2021, Page(s) 1684, ISSN 1420-3049
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules26061684

Amorphous Carbon Generation as a Photocatalytic Reaction on DNA-Assembled Gold and Silver Nanostructures

Author(s): Christian Heck, Yuya Kanehira, Janina Kneipp, Ilko Bald
Published in: Molecules, Issue 24/12, 2019, Page(s) 2324, ISSN 1420-3049
Publisher: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/molecules24122324

A new reporter design based on DNA origami nanostructures for quantification of short oligonucleotides using microbeads

Author(s): Youngeun Choi, Carsten Schmidt, Philip Tinnefeld, Ilko Bald, Stefan Rödiger
Published in: Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-019-41136-x

Role of Valence Band States and Plasmonic Enhancement in Electron-Transfer-Induced Transformation of Nitrothiophenol

Author(s): Robin Schürmann, Kenny Ebel, Christophe Nicolas, Aleksandar R. Milosavljević, Ilko Bald
Published in: The Journal of Physical Chemistry Letters, Issue 10/11, 2019, Page(s) 3153-3158, ISSN 1948-7185
Publisher: American Chemical Society
DOI: 10.1021/acs.jpclett.9b00848

Analytical epigenetics: single-molecule optical detection of DNA and histone modifications

Author(s): Christian Heck, Yael Michaeli, Ilko Bald, Yuval Ebenstein
Published in: Current Opinion in Biotechnology, Issue 55, 2019, Page(s) 151-158, ISSN 0958-1669
Publisher: Elsevier BV
DOI: 10.1016/j.copbio.2018.09.006

Folding DNA into origami nanostructures enhances resistance to ionizing radiation.

Author(s): Leo Sala; Agnes Zerolová; Alvaro Rodriguez; Dan Reimitz; Marie Davídková; Kenny Ebel; Ilko Bald; Jaroslav Kočišek
Published in: Nanoscale, Issue 13, 2021, Page(s) 11197, ISSN 2040-3364
Publisher: Royal Society of Chemistry
DOI: 10.1039/d1nr02013g

Experimental and Theoretical Studies of Dissociative Electron Attachment to Metabolites Oxaloacetic and Citric Acids

Author(s): J. Kopyra, P. Wierzbicka, A. Tulwin, G. Thiam, I. Bald, F. Rabilloud and H. Abdoul-Carime
Published in: International Journal of Molecular Sciences, Issue 22, 2021, Page(s) 7676, ISSN 1000-9035
Publisher: mdpi
DOI: 10.3390/ijms22147676

Microscopic Understanding of Reaction Rates Observed in Plasmon Chemistry of Nanoparticle–Ligand Systems

Author(s): Robin Schürmann; Alessandro Nagel; Sabrina Juergensen; Anisha Pathak; Stephanie Reich; Claudia Pacholski; Ilko Bald
Published in: The Journal of Physical Chemistry C, Issue 126, 2022, Page(s) 5333, ISSN 1932-7447
Publisher: American Chemical Society
DOI: 10.1021/acs.jpcc.2c00278

Low-Energy (5–20 eV) Electron-Induced Single and Double Strand Breaks in Well-Defined DNA Sequences

Author(s): Kenny Ebel; Ilko Bald
Published in: The Journal of Physical Chemistry Letters, Issue 13, 2022, Page(s) 4871, ISSN 1948-7185
Publisher: American Chemical Society
DOI: 10.1021/acs.jpclett.2c00684

Molecular states and spin crossover of hemin studied by DNA origami enabled single-molecule surface-enhanced Raman scattering

Author(s): Anushree Dutta; Kosti Tapio; Antonio Suma; Amr Mostafa; Yuya Kanehira; Vincenzo Carnevale; Giovanni Bussi; Ilko Bald
Published in: Nanoscale, Issue 14, 2022, Page(s) 16467, ISSN 2040-3364
Publisher: Royal Society of Chemistry
DOI: 10.1039/d2nr03664a