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Contextualizing biomolecular circuit models for synthetic biology

Deliverables

Data Management Plan

We will provide a plan for dissemination the data and models generated and used within CONSYN

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Publications

Cell-Free Prototyping of AND-Logic Gates Based on Heterogeneous RNA Activators

Author(s): François-Xavier Lehr, Maleen Hanst, Marc Vogel, Jennifer Kremer, H. Ulrich Göringer, Beatrix Suess, Heinz Koeppl
Published in: ACS Synthetic Biology, Issue 8/9, 2019, Page(s) 2163-2173, ISSN 2161-5063
DOI: 10.1021/acssynbio.9b00238

Context in synthetic biology: Memory effects of environments with mono-molecular reactions

Author(s): Johannes Falk, Leo Bronstein, Maleen Hanst, Barbara Drossel, Heinz Koeppl
Published in: The Journal of Chemical Physics, Issue 150/2, 2019, Page(s) 024106, ISSN 0021-9606
DOI: 10.1063/1.5053816

Hybrid master equation for jump-diffusion approximation of biomolecular reaction networks

Author(s): Altintan Derya Koeppl Heinz
Published in: BIT Numerical Mathematics, 2019, ISSN 1572-9125

Moment-Based Variational Inference for Markov Jump Processes

Author(s): Christian Wildner, Heinz Koeppl
Published in: Proceedings of the 36th International Conference on Machine Learning, 2019

Scalable Structure Learning of Continuous-Time Bayesian Networks from Incomplete Data

Author(s): Dominik Lindner, Michael Schmidt, Heinz Koeppl
Published in: 2019

Maximizing information gain for the characterization of biomolecular circuits

Author(s): Tim Prangemeier, Christian Wildner, Maleen Hanst, Heinz Koeppl
Published in: Proceedings of the 5th ACM International Conference on Nanoscale Computing and Communication - NANOCOM '18, 2018, Page(s) 1-6
DOI: 10.1145/3233188.3233217