Deliverables
Link to the event website with programme and slidesLead Beneficiary ElixirHub
D2.4 FAIR Cookbook - Public VersionThe FAIR Cookbook and four initial recipes will be released in a public repository on GitHub Throughout the rest of the project the Cookbook will be updated with new recipes as they become available
D3.5 Provide IMI FAIR Data CatalogueProvide a link to the IMI FAIR data catalogue for IMI data in scope supporting data discovery at high level and where IMI FAIRification progress and metrics can be publicly indicated
D1.3 The first 15 IMI data sets selected and available for inclusion in WP2 - 4 processesA list of the 15 IMI data sets presented and minuted at the monthly Managing Board meeting
D4.1 Description of the objective evaluation criteria for the application reviewThe objective evaluation criteria for the application review will be definedThe criteria will include a description of how equal treatment of all applications will be ensured for those receiving public funding
D2.1 FAIR CookbookThis is the final document in the form of recipes containing guidance on how to use a stack of standards metrics and related services to FAIRify datasets
D2.6 FAIR-CMMA report outlining the outputs of the FAIRCMM work including the final version of the FAIRCMM maturation steps and indicators
D3.7 A FAIRification guidance tool for IMIThe guidance tool will allow users to make a selection of both community and project delivered tools and processes for specific FAIRification use cases
D4.3 FAIRplus Fellowship ProgrammeA link to the documentation of the completed Fellowship Programme including its structure training modules incentives and legal framework
D1.2 Selection criteria and guidelines for data sources from IMI projects and EFPIA internal databasesReport describing criteria including underlying rationale with respect to ELSI scientific impact societal impact ease of access etc Scope will include specific information on pilot data sets In criteria setting the societal impact of pilot data sets will be determined with respect to EU priorities see above and the contribution to the goal of 23 of data sets being of high societal impact will be determined
D2.5 FAIR-CMM - Alpha VersionA simple deliverable report as a method to disseminate the FAIRCMM
D5.8 FAIRplus overview of the scientific publicationsCollective view of the scientific publications generated during the project time frameLead ELIXIR Hub
D4.4 Report on Policy-maker engagement strategyCompletion and publication of report
D3.6 Provide a technical feasibility reportProvide a technical feasibility report with an exemplar for each data type outlining local remote and cloudbased options for FAIRification hosting including security options as well as existing solutions Lead EMBLEBI
D5.4 KPI DashboardLink to the FAIRplus lightweight Dashboard that will build on current resourcesLead ELIXIR Hub
D5.3 FAIRplus Handbook and project monitoringLink to the initial version of the project handbook including guidelines ie Governance communication and assets as well as project performance indicators Lead ELIXIR Hub
D3.1 First phase Exemplar IMI projects FAIRifiedA list of data available from Exemplar IMI projects according to FAIR principles from IMI catalogue indicating level of FAIRLead EMBLEBI
D3.8 Sustainability White PaperLink to the sustainability white paperLead ELIXIR Hub
D4.5 Use case dissemination packageComplete package comprising three convincing use cases demonstrating the scientific value of FAIRification in a convincing manner appealing to both researchers and research support staff
D1.1 First 3 data sets from Pilot selected and availableA list of the selected pilots presented and minuted at the monthly Managing Board meeting
D3.3 Report on IMI projects for data types and current technical solutionsReport on IMI projects for data types and current technical solutions detailing phasing of implementationLead EMBLEBI
D5.7 FAIRplus Handbook and project monitoringUpdate of the FAIRplus Handbook focusing on lessons learntLead ELIXIR Hub
D5.5 Sustainability PlanConsolidated sustainability plan that will incorporate inputs of all participants and specific work carried out by other WPsLead EMBLEBI
D3.2 IMI FAIR Metrics PublicationPublication on generation of FAIR metrics and example applicationLead EMBLEBI
D.2.2 BYOD GuidelinesThis is the final document encompassing best practice for organising BYODs as well as explaining how to FAIRify specific data types for different maturation levels
D5.1 Website, project governance and communication assets and guidelines availableD51 Website project governance and communication assets and guidelines availableWebsite project governance and communication assets and guidelines are availableLead ELIXIR Hub
Publications
Author(s):
Tseng, Yun-Yun; Scollen, Serena; Hurst, Hannah; Taverner, Ellie; Sansone, Susanna-Assunta
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7447947
Author(s):
Welter, Danielle; Rocca-Serra, Philippe; Grouès, Valentin; Sallam, Nirmeen; Ancien, François; Shabani, Abetare; Asariardakani, Saeideh; Alper, Pinar; Ghosh, Soumyabrata; Burdett, Tony; Sansone, Susanna-Assunta; Gu, Wei; Satagopam, Venkata
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7157284
Author(s):
Hurst, Hannah; Peeters, Paul; Scollen, Serena; Taverner, Ellie; Pérez Sitjà, Xènia; Xu, Fuqi; Burdett, Tony; Rocca-Serra, Philippe; Juty, Nick; Emam, Ibrahim; Strubel, Jolanda; Splendiani, Andrea
Published in:
Issue 3, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.5789380
Author(s):
Boiten, Jan-Willem; Bonora, Daniela; Boutsma, Erwin; Custers, Ilse; Duyndam, Alexander; Gadiya, Yojana; Gribbon, Philip; Juty, Nick
Published in:
2023
Publisher:
Zenodo
DOI:
10.5281/zenodo.7639819
Author(s):
Welter, Danielle, Juty, Nick, Rocca-Serra, Philippe, Xu, Fuqi, Henderson, David, Gu, Wei, Strubel, Jolanda, Giessmann, Robert T., Emam, Ibrahim, Gadiya, Yojana, Abbassi-Daloii, Tooba, Alharbi, Ebtisam, Gray, Alasdair J.G., Courtot, Melanie, Gribbon, Philip, Ioannidis, Vassilios, Reilly, Dorothy S., Lynch, Nick, Boiten, Jan-Willem, Satagopam, Venkata; Goble, Carole; Sansone, Susanna-Assunta; Burde
Published in:
2023
Publisher:
Zenodo
DOI:
10.5281/zenodo.7702124
Author(s):
Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Gu, Wei; Welter, Danielle; Abbassi Daloii, Tooba; Portell-Silva, Laura
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6783563
Author(s):
Beyan, Oya; Emam, Ibrahim; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Juty, Nick; Alharbi, Ebtisam; Wood, Colin; Henderson, David; Burdett, Tony; Konopko, Melissa
Published in:
Issue 1, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.5040592
Author(s):
Xu, Fuqi; Burdett, Tony; Lynch, Nick; Gribbon, Philip; Henderson, David
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6821509
Author(s):
Willighagen, Egon
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7316412
Author(s):
Juty, Nick; Courtot, Melanie; Burdett, Tony; Goble, Carole; Gray, Alasdair; Evelo, Chris; Willighagen, Egon; Nunes, Nuno; Rocca-Serra, Philippe; Batista, Dominique; Sansone, Susanna-Assunta; Kohler, Manfred; Welter, Danielle; Imam, Ibrahim; Gribbon, Philip
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6806341
Author(s):
Engkvist, Ola; Gribbon, Philip; Ioannidis, Vassilios; Kohler, Manfred; Henderson, David; Zaliani, Andrea; Witt, Gesa; Reilly, Dorothy
Published in:
Issue 2, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.4428746
Author(s):
Philippe Rocca-Serra; Wei Gu; Vassilios Ioannidis; Tooba Abbassi Daloii; Salvador Capella-Gutierrez; Ishwar Chandramouliswaran; Andrea Splendiani; Tony Burdett; Robert T. Giessmann; David Henderson; Dominique Batista; Allyson Lister; Ibrahim Emam; Yojana Gadiya; Lucas Giovanni; Egon Willighagen; Chris Evelo; Alasdair J. G. Gray; Philip Gribbon; Nick Juty; Danielle Welter; Karsten Quast; Paul Peete
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7156792
Author(s):
Custers, Ilse; Boutsma, Erwin; Boiten, Jan-Willem; Duyndam, Alexander; Xu, Fuqi; Juty, Nick; Gribbon, Philip
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7441699
Author(s):
Blackshaw, James; Boutsma, Erwin; Edfeldt, Kristina; Edwards, Aled; Emam, Ibrahim; Felix, Eloy; Ferreira, Lucas Martins; Gaulton, Anna; Giessmann, Robert; Hartley, Matthew; Juty, Nick; Knapp, Stefan; Leach, Andrew; Marsden, Brian; Mendez, David; Montel, Florian; Mueller-Knapp, Susanne; Reilly, Dorothy; Rocca-Serra, Philippe; Sarakans, Ugis; Tjaden, Amelie
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7270761
Author(s):
Welter, Danielle; Juty, Nick; Rocca-Serra, Philippe; Xu, Fuqi; Henderson, David; Gu, Wei; Strubel, Jolanda; Giessmann, Robert T.; Emam, Ibrahim; Gadiya, Yojana; Abbassi-Daloii, Tooba; Alharbi, Ebtisam; Gray, Alasdair J.G.; Courtot, Melanie; Gribbon, Philip; Ioannidis, Vassilios; Reilly, Dorothy S.; Lynch, Nick; Boiten, Jan-Willem; Satagopam, Venkata; Goble, Carole; Sansone, Susanna-Assunta; Burdet
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7157066
Author(s):
Hurst, Hannah; Peeters, Paul
Published in:
Issue 1, 2019
Publisher:
Zenodo
DOI:
10.5281/zenodo.2653565
Author(s):
Pippow, Andreas; Kroh, Franziska; Boiten, Jan-Willem; Mabile, Laurence
Published in:
Issue 1, 2019
Publisher:
Zenodo
DOI:
10.5281/zenodo.3465652
Author(s):
Pippow, Andreas; Kroh, Franziska
Published in:
Issue 1, 2020
Publisher:
Zenodo
DOI:
10.5281/zenodo.3935396
Author(s):
Gribbon, Philip; Gu, Wei; Sanz, Ferran; Ioannidis, Vassilios; Engkvist, Ola; Henderson, David; Reilly, Dorothy; Rocca-Serra, Philippe; Zaliani, Andrea; Witt, Gesa; Kohler, Manfred; Giessmann, Robert
Published in:
Issue 1, 2019
Publisher:
Zenodo
DOI:
10.5281/zenodo.3596024
Author(s):
Lauer, Katharina
Published in:
Issue 1, 2020
Publisher:
Zenodo
DOI:
10.5281/zenodo.3691769
Author(s):
Burdett, Tony; Courtot, Mélanie; Xu, Fuqi; Gu, Wei; Satagopam, Venkata; Juty, Nick; Beyan, Oya; Ronzano, Francesco; Furlong, Laura; Emam, Ibrahim; Goble, Carole; Giessmann, Robert; Lynch, Nick
Published in:
Issue 1, 2019
Publisher:
Zenodo
DOI:
10.5281/zenodo.3587397
Author(s):
Duyndam, Alexander; Smith, Andrew; Boiten, Jan-Willem
Published in:
Issue 1, 2020
Publisher:
Zenodo
DOI:
10.5281/zenodo.3733199
Author(s):
Hurst, Hannah; Peeters, Paul; Scollen, Serena; Coutts, Nikki
Published in:
Issue 1, 2019
Publisher:
Zenodo
DOI:
10.5281/zenodo.3585509
Author(s):
Velek, Premysl; Hurst, Hannah; Cook, Martin; Burdett, Tony; Gu, Wei; Courtot, Melanie; Rocca-Serra, Philippe; Henderson, David
Published in:
Issue 1, 2020
Publisher:
Zenodo
DOI:
10.5281/zenodo.3964434
Author(s):
Philippe Rocca-Serra; Robert Giessmann; Andrea Splendiani; Jan-Willem Boiten; Melanie Courtot; Tony Burdett; Fuqi Xu; Susanna-Assunta Sansone
Published in:
Issue 1, 2020
Publisher:
Zenodo
DOI:
10.5281/zenodo.3924476
Author(s):
Gribbon, Philip; Gu, Wei; Sanz, Ferran; Ioannidis, Vassilios; Kohler, Manfred; Zaliani, Andrea; Henderson, David; Reilly, Dorothy; Rocca-Serra, Philippe
Published in:
Issue 1, 2019
Publisher:
Zenodo
DOI:
10.5281/zenodo.3274229
Author(s):
Emam, Ibrahim; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Portell-Silva, Laura; Gadiya, Yojana; Welter, Danielle; Juty, Nick; Abbassi-Daloii, Tooba
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7464523
Author(s):
Manuel Pastor; Gómez-Tamayo, José Carlos; Sanz, Ferran
Published in:
Issue 1, 2021
Publisher:
Springer Nature
DOI:
10.6084/m9.figshare.14450922.v1
Author(s):
Lynch, Nick; Williams-Jones, Bryn
Published in:
Issue March 21, 2022, 2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6373694
Author(s):
Burdett, Tony; Xu, Fuqi; Courtot, M��lanie; Juty, Nick
Published in:
Issue 1, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.4428633
Author(s):
Boutsma, Erwin; Custers, Ilse; Boiten, Jan-Willem; Gribbon, Philip; Arrazuria, Rakel; Gadiya, Yojana; Hansen, Jon Ulf
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6685799
Author(s):
Satagopam, Venkata; Welter, Danielle; Gu, Wei; Grouès, Valentin; Rocca-Serra, Philippe
Published in:
Issue 3, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.5788626
Author(s):
Burdett, Tony; Xu, Fuqi; Gu, Wei; Juty, Nick; Emam, Ibrahim; Boiten, Jan-Willem; Rocca-Serra, Philippe
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6856874
Author(s):
Lynch, Nick; Willams-Jones, Bryn; Scollen, Serena; Burdett, Tony; van Vlijmen, Herman
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6385121
Author(s):
Burdett, Tony; Courtot, M��lanie; Xu, Fuqi; Juty, Nick; Strubel, Jolanda; Gu, Wei; Welter, Danielle; Quast, Karsten; Reilly, Dorothy
Published in:
Issue 3, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.4428721
Author(s):
Scollen, Serena; Lynch, Nick; Williams-Jones, Bryn; Hurst, Hannah; Peeters, Paul; Sansone, Susanna; Rocca-Serra, Philippe; Delfin, Alejandra; Cambon-Thomsen, Anne; Emam, Ibrahim; Juty, Nick; Pippow, Andreas; Beyan, Oya
Published in:
Issue 3, 2020
Publisher:
Zenodo
DOI:
10.5281/zenodo.4354651
Author(s):
Boiten, Jan-Willem; Custers, Ilse; Duyndam, Alexander; Gribbon, Philip; Juty, Nick; Welter, Danielle; Boutsma, Erwin; Peelen, Sjaak
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6685729
Author(s):
Custers, Ilse; Weitenberg, Edmar; Duyndam, Alexander; Boiten, Jan-Willem; Pérez Sitjà, Xènia; Willighagen, Egon; Ronzano, Francesco; Giessmann, Robert; Juty, Nick; Ioannidis, Vassilios; Emam, Ibrahim; Rocca-Serra, Philippe
Published in:
Issue 1, 2021
Publisher:
Zenodo
DOI:
10.5281/zenodo.5786674
Author(s):
Boutsma, Erwin; Boiten, Jan-Willem; Custers, Ilse; Duyndam, Alexander; Tseng, Yun-Yun
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6799039
Author(s):
Soumyabrata, Ghosh; Balaur Irina-Afrodita; Rommes Basile; Rege Kavita; Ćwiek-Kupczyńska Hanna; Wei, Gu; Schneider Reinhard; Satagopam
Published in:
Issue 1, 2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7102574
Author(s):
Alharbi, Ebtisam, Juty, Nick, Jay, Caroline, & Goble, Carole
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.6942268
Author(s):
Rodríguez-Espigares, I., Torrens-Fontanals, M., Tiemann
Published in:
Nature Methods, 2020, ISSN 1548-7091
Publisher:
Nature Publishing Group
DOI:
10.1038/s41592-020-0884-y
Author(s):
Manuel Bernal-Llinares, Javier Ferrer-Gómez, Nick Juty, Carole Goble, Sarala M Wimalaratne, Henning Hermjakob
Published in:
Bioinformatics, 2021, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btaa864
Author(s):
Angela Leis; Francesco Ronzano; Miguel Angel Mayer; Laura I. Furlong; Ferran Sanz
Published in:
Journal of Medical Internet Research, Issue 1, 2020, ISSN 1438-8871
Publisher:
Journal of medical Internet Research
DOI:
10.2196/20920
Author(s):
Manuel Pastor; José Carlos Gómez-Tamayo; Ferran Sanz
Published in:
Journal of Cheminformatics, Vol 13, Iss 1, Pp 1-15 (2021), Issue 2, 2021, ISSN 1758-2946
Publisher:
Chemistry Central
DOI:
10.21203/rs.3.rs-107430/v1
Author(s):
Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, Mohamed Yahia, Clement Jonquet, Laurent Dollé, Daniel Jacob, Daniele Bailo, Elena Bravo, Sophie Gachet, Hannah Gunderman, Jean-Eudes Hollebecq, Vassilios Ioannidis, Yvan Le Bras, Emilie Lerigoleur, Anne Cambon-Thomsen
Published in:
Data Science Journal, Issue 19, 2020, ISSN 1683-1470
Publisher:
Committee on Data for Science and Technology (CODATA) International Council for Science (ICSU)
DOI:
10.5334/dsj-2020-032
Author(s):
Philippe Rocca-Serra, Susanna-Assunta Sansone
Published in:
Scientific Data, Issue 6/1, 2019, ISSN 2052-4463
Publisher:
Scientific Data
DOI:
10.1038/s41597-019-0286-0
Author(s):
Mark D. Wilkinson, Michel Dumontier, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Mario Prieto, Dominique Batista, Peter McQuilton, Tobias Kuhn, Philippe Rocca-Serra, Mercѐ Crosas, Erik Schultes
Published in:
Scientific Data, Issue 6/1, 2019, ISSN 2052-4463
Publisher:
Nature
DOI:
10.1038/s41597-019-0184-5
Author(s):
Anna-Lena Lamprecht, Leyla Garcia, Mateusz Kuzak, Carlos Martinez, Ricardo Arcila, Eva Martin Del Pico, Victoria Dominguez Del Angel, Stephanie van de Sandt, Jon Ison, Paula Andrea Martinez, Peter McQuilton, Alfonso Valencia, Jennifer Harrow, Fotis Psomopoulos, Josep Ll. Gelpi, Neil Chue Hong, Carole Goble, Salvador Capella-Gutierrez
Published in:
Data Science, Issue 3/1, 2020, Page(s) 37-59, ISSN 2451-8492
Publisher:
IOS Press
DOI:
10.3233/ds-190026
Author(s):
Annika Jacobsen, Ricardo de Miranda Azevedo, Nick Juty, Dominique Batista, Simon Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. Evelo, Carole Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina Hettne, Jaap Heringa, Rob W.W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias K
Published in:
Data Intelligence, Issue 2/1-2, 2020, Page(s) 10-29, ISSN 2641-435X
Publisher:
The MIT Press Journals
DOI:
10.1162/dint_r_00024
Author(s):
Ebtisam Alharbi, Yojana Gadiya, David Henderson, Andrea Zaliani, Alejandra Delfin-Rossaro, Anne Cambon-Thomsen, Manfred Kohler, Gesa Witt, Danielle Welter, Nick Juty, Caroline Jay, Ola Engkvist, Carole Goble, Dorothy S. Reilly, Venkata Satagopam, Vassilios Ioannidis, Wei Gu, Philip Gribbon
Published in:
Drug Discovery Today, Issue Volume 27, Issue 8, 2022, Page(s) 2080-2085, ISSN 1359-6446
Publisher:
Elsevier BV
DOI:
10.1016/j.drudis.2022.05.010
Author(s):
Yojana Gadiya; Rakel Arrazuria; Jon Ulf Hansen; Danielle Welter; Fuqi Xu; Philippe Rocca-Serra; Nick Juty; Philip Gribbon
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7187941
Author(s):
Rocca-Serra, Philippe
Published in:
Issue 1, 2020
Publisher:
Zenodo
DOI:
10.5281/zenodo.4133822
Author(s):
Goble, Carole; Alharbi, Ebtisam; Juty, Nick; Jay, Caroline; Skeva, Rigina
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.7267881
Author(s):
Anne, Cambon-Thomsen; Laurence, Mabile; Mogens, Thomsen; Romain, David
Published in:
https://hal.archives-ouvertes.fr/hal-02310949, Issue 1, 2019
Publisher:
Zenodo
DOI:
10.5281/zenodo.3479151
Author(s):
Strubel, Jolanda
Published in:
2022
Publisher:
Zenodo
DOI:
10.5281/zenodo.5913819
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