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FAIRplus

Deliverables

D4.2 First FAIR Innovation and SME event

○ Link to the event website with programme and slides. Lead Beneficiary: Elixir-Hub

D2.4 FAIR Cookbook - Public Version

○ The FAIR Cookbook and four initial recipes will be released in a public repository on GitHub. Throughout the rest of the project the Cookbook will be updated with new recipes as they become available.

D3.5 Provide IMI FAIR Data Catalogue

Provide a link to the IMI FAIR data catalogue for IMI data in scope supporting data discovery at high level and where IMI FAIRification progress and metrics can be publicly indicated

D1.3 The first 15 IMI data sets selected and available for inclusion in WP2 - 4 processes

○ A list of the 15 IMI data sets presented and minuted at the monthly Managing Board meeting.

D4.1 Description of the objective evaluation criteria for the application review

○ The objective evaluation criteria for the application review will be defined.The criteria will include a description of how equal treatment of all applications will be ensured for those receiving public funding.

D4.3 FAIRplus Fellowship Programme

○ A link to the documentation of the completed Fellowship Programme including its structure, training modules, incentives, and legal framework.

D1.2 Selection criteria and guidelines for data sources from IMI projects and EFPIA internal databases

○ Report describing criteria including underlying rationale with respect to ELSI, scientific impact, societal impact, ease of access etc. Scope will include specific information on pilot data sets. In criteria setting, the societal impact of pilot data sets will be determined with respect to EU priorities (see above) and the contribution to the goal of 2/3 of data sets being of high societal impact will be determined.

D2.5 FAIR-CMM - Alpha Version

A simple deliverable report as a method to disseminate the FAIR-CMM

D4.4 Report on Policy-maker engagement strategy

○ Completion and publication of report.

D5.4 KPI Dashboard

○ Link to the FAIRplus light-weight Dashboard that will build on current resources. Lead: ELIXIR Hub

D5.3 FAIRplus Handbook and project monitoring

○ Link to the initial version of the project handbook including guidelines (i.e. Governance, communication) and assets as well as project performance indicators. Lead: ELIXIR Hub

D3.1 First phase Exemplar IMI projects FAIRified

○ A list of data available from Exemplar IMI projects according to FAIR principles from IMI catalogue indicating level of FAIR. Lead: EMBL-EBI

D1.1 First 3 data sets from Pilot selected and available

○ A list of the selected pilots presented and minuted at the monthly Managing Board meeting

D3.3 Report on IMI projects for data types and current technical solutions

○ Report on IMI projects for data types and current technical solutions detailing phasing of implementation. Lead: EMBL-EBI

D5.7 FAIRplus Handbook and project monitoring

Update of the FAIRplus Handbook focusing on lessons learntLead ELIXIR Hub

D5.5 Sustainability Plan

○ Consolidated sustainability plan that will incorporate inputs of all participants and specific work carried out by other WPs. Lead: EMBL-EBI

D3.2 IMI FAIR Metrics Publication

○ Publication on generation of FAIR metrics and example application. Lead: EMBL-EBI

D5.1 Website, project governance and communication assets and guidelines available

D5.1 Website, project governance and communication assets and guidelines available. ○ Website, project governance and communication assets and guidelines are available. Lead: ELIXIR Hub

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Publications

Flame: an open source framework for model development, hosting, and usage in production environments

Author(s): Manuel Pastor; José Carlos Gómez-Tamayo; Ferran Sanz
Published in: Journal of Cheminformatics, Vol 13, Iss 1, Pp 1-15 (2021), 2, 2021, ISSN 1758-2946
Publisher: Chemistry Central
DOI: 10.21203/rs.3.rs-107430/v1

Evaluating Behavioral and Linguistic Changes During Drug Treatment for Depression Using Tweets in Spanish: Pairwise Comparison Study.

Author(s): Angela Leis; Francesco Ronzano; Miguel Angel Mayer; Laura I. Furlong; Ferran Sanz
Published in: Journal of Medical Internet Research, 1, 2020, ISSN 1438-8871
Publisher: Journal of medical Internet Research
DOI: 10.2196/20920

Flame: an open source framework for model development, hosting, and usage in production environments

Author(s): Manuel Pastor; José Carlos Gómez-Tamayo; Ferran Sanz
Published in: Journal of Cheminformatics, Vol 13, Iss 1, Pp 1-15 (2021), 2, 2021, ISSN 1758-2946
Publisher: Chemistry Central
DOI: 10.21203/rs.3.rs-107430/v1

FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles

Author(s): Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, Mohamed Yahia, Clement Jonquet, Laurent Dollé, Daniel Jacob, Daniele Bailo, Elena Bravo, Sophie Gachet, Hannah Gunderman, Jean-Eudes Hollebecq, Vassilios Ioannidis, Yvan Le Bras, Emilie Lerigoleur, Anne Cambon-Thomsen
Published in: Data Science Journal, 19, 2020, ISSN 1683-1470
Publisher: Committee on Data for Science and Technology (CODATA) International Council for Science (ICSU)
DOI: 10.5334/dsj-2020-032

Experiment design driven FAIRification of omics data matrices, an exemplar

Author(s): Philippe Rocca-Serra, Susanna-Assunta Sansone
Published in: Scientific Data, 6/1, 2019, ISSN 2052-4463
Publisher: Scientific Data
DOI: 10.1038/s41597-019-0286-0

Evaluating FAIR maturity through a scalable, automated, community-governed framework

Author(s): Mark D. Wilkinson, Michel Dumontier, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Mario Prieto, Dominique Batista, Peter McQuilton, Tobias Kuhn, Philippe Rocca-Serra, Mercѐ Crosas, Erik Schultes
Published in: Scientific Data, 6/1, 2019, ISSN 2052-4463
Publisher: Nature
DOI: 10.1038/s41597-019-0184-5

Towards FAIR principles for research software

Author(s): Anna-Lena Lamprecht, Leyla Garcia, Mateusz Kuzak, Carlos Martinez, Ricardo Arcila, Eva Martin Del Pico, Victoria Dominguez Del Angel, Stephanie van de Sandt, Jon Ison, Paula Andrea Martinez, Peter McQuilton, Alfonso Valencia, Jennifer Harrow, Fotis Psomopoulos, Josep Ll. Gelpi, Neil Chue Hong, Carole Goble, Salvador Capella-Gutierrez
Published in: Data Science, 3/1, 2020, Page(s) 37-59, ISSN 2451-8492
Publisher: IOS Press
DOI: 10.3233/ds-190026

FAIR Principles: Interpretations and Implementation Considerations

Author(s): Annika Jacobsen, Ricardo de Miranda Azevedo, Nick Juty, Dominique Batista, Simon Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. Evelo, Carole Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina Hettne, Jaap Heringa, Rob W.W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias K
Published in: Data Intelligence, 2/1-2, 2020, Page(s) 10-29, ISSN 2641-435X
Publisher: The MIT Press Journals
DOI: 10.1162/dint_r_00024

D5.7 FAIRplus Handbook and project monitoring

Author(s): Hurst, Hannah; Peeters, Paul; Scollen, Serena; Taverner, Ellie; Pérez Sitjà, Xènia; Xu, Fuqi; Burdett, Tony; Rocca-Serra, Philippe; Juty, Nick; Emam, Ibrahim; Strubel, Jolanda; Splendiani, Andrea
Published in: 3, 2021
Publisher: Zenodo
DOI: 10.5281/zenodo.5789380

D2.5 FAIRplus FAIR Data Maturity Framework

Author(s): Beyan, Oya; Emam, Ibrahim; Rocca-Serra, Philippe; Sansone, Susanna-Assunta; Juty, Nick; Alharbi, Ebtisam; Wood, Colin; Henderson, David; Burdett, Tony; Konopko, Melissa
Published in: 1, 2021
Publisher: Zenodo
DOI: 10.5281/zenodo.5040592

Additional file 2 of Flame: an open source framework for model development, hosting, and usage in production environments

Author(s): Manuel Pastor; Gómez-Tamayo, José Carlos; Sanz, Ferran
Published in: 1, 2021
Publisher: Springer Nature
DOI: 10.6084/m9.figshare.14450922.v1

FAIRplus: D1.3 The first 15 IMI data sets selected and available for inclusion in WP 2 - 4 processes

Author(s): Engkvist, Ola; Gribbon, Philip; Ioannidis, Vassilios; Kohler, Manfred; Henderson, David; Zaliani, Andrea; Witt, Gesa; Reilly, Dorothy
Published in: 2, 2021
Publisher: Zenodo
DOI: 10.5281/zenodo.4428746

FAIRplus: D5.01 Website, project governance and communication assets and guidelines available

Author(s): Hurst, Hannah; Peeters, Paul
Published in: 1, 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.2653565

FAIRplus: D4.01 Description of the objective evaluation criteria for the application review

Author(s): Pippow, Andreas; Kroh, Franziska; Boiten, Jan-Willem; Mabile, Laurence
Published in: 1, 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3465652

FAIRplus D4.3 - FAIRplus fellowship curriculum

Author(s): Pippow, Andreas; Kroh, Franziska
Published in: 1, 2020
Publisher: Zenodo
DOI: 10.5281/zenodo.3935396

FAIRplus: D1.2 Selection criteria and guidelines for data sources from IMI projects and EFPIA internal databases

Author(s): Gribbon, Philip; Gu, Wei; Sanz, Ferran; Ioannidis, Vassilios; Engkvist, Ola; Henderson, David; Reilly, Dorothy; Rocca-Serra, Philippe; Zaliani, Andrea; Witt, Gesa; Kohler, Manfred; Giessmann, Robert
Published in: 1, 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3596024

FAIRplus: D4.2 First FAIR Innovation and SME event

Author(s): Lauer, Katharina
Published in: 1, 2020
Publisher: Zenodo
DOI: 10.5281/zenodo.3691769

FAIRplus: D3.01 First phase exemplar IMI projects FAIRified

Author(s): Burdett, Tony; Courtot, Mélanie; Xu, Fuqi; Gu, Wei; Satagopam, Venkata; Juty, Nick; Beyan, Oya; Ronzano, Francesco; Furlong, Laura; Emam, Ibrahim; Goble, Carole; Giessmann, Robert; Lynch, Nick
Published in: 1, 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3587397

FAIRplus D4.4 Policy Maker Engagement Strategy

Author(s): Duyndam, Alexander; Smith, Andrew; Boiten, Jan-Willem
Published in: 1, 2020
Publisher: Zenodo
DOI: 10.5281/zenodo.3733199

FAIRplus: D5.03 FAIRplus Handbook and project monitoring

Author(s): Hurst, Hannah; Peeters, Paul; Scollen, Serena; Coutts, Nikki
Published in: 1, 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3585509

FAIRplus: D5.4 KPI Dashboard

Author(s): Velek, Premysl; Hurst, Hannah; Cook, Martin; Burdett, Tony; Gu, Wei; Courtot, Melanie; Rocca-Serra, Philippe; Henderson, David
Published in: 1, 2020
Publisher: Zenodo
DOI: 10.5281/zenodo.3964434

D2.4 FAIR Cookbook - Public Version

Author(s): Philippe Rocca-Serra; Robert Giessmann; Andrea Splendiani; Jan-Willem Boiten; Melanie Courtot; Tony Burdett; Fuqi Xu; Susanna-Assunta Sansone
Published in: 1, 2020
Publisher: Zenodo
DOI: 10.5281/zenodo.3924476

FAIRplus D1.01 First 3 data sets from Pilots selected and available

Author(s): Gribbon, Philip; Gu, Wei; Sanz, Ferran; Ioannidis, Vassilios; Kohler, Manfred; Zaliani, Andrea; Henderson, David; Reilly, Dorothy; Rocca-Serra, Philippe
Published in: 1, 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3274229

Additional file 2 of Flame: an open source framework for model development, hosting, and usage in production environments

Author(s): Manuel Pastor; Gómez-Tamayo, José Carlos; Sanz, Ferran
Published in: 1, 2021
Publisher: Springer Nature
DOI: 10.6084/m9.figshare.14450922.v1

FAIRplus: D3.2 IMI FAIR Metrics Publication

Author(s): Burdett, Tony; Xu, Fuqi; Courtot, M��lanie; Juty, Nick
Published in: 1, 2021
Publisher: Zenodo
DOI: 10.5281/zenodo.4428633

D3.5 Provide IMI FAIR Data Catalogue

Author(s): Satagopam, Venkata; Welter, Danielle; Gu, Wei; Grouès, Valentin; Rocca-Serra, Philippe
Published in: 3, 2021
Publisher: Zenodo
DOI: 10.5281/zenodo.5788626

FAIRplus: D3.3 Report on IMI projects for data types and current technical solutions

Author(s): Burdett, Tony; Courtot, M��lanie; Xu, Fuqi; Juty, Nick; Strubel, Jolanda; Gu, Wei; Welter, Danielle; Quast, Karsten; Reilly, Dorothy
Published in: 3, 2021
Publisher: Zenodo
DOI: 10.5281/zenodo.4428721

FAIRplus: D5.5. Sustainability Plan

Author(s): Scollen, Serena; Lynch, Nick; Williams-Jones, Bryn; Hurst, Hannah; Peeters, Paul; Sansone, Susanna; Rocca-Serra, Philippe; Delfin, Alejandra; Cambon-Thomsen, Anne; Emam, Ibrahim; Juty, Nick; Pippow, Andreas; Beyan, Oya
Published in: 3, 2020
Publisher: Zenodo
DOI: 10.5281/zenodo.4354651

FAIRplus: eTOX Case Study - Opening up toxicology data about candidate drugs

Author(s): Custers, Ilse; Weitenberg, Edmar; Duyndam, Alexander; Boiten, Jan-Willem; Pérez Sitjà, Xènia; Willighagen, Egon; Ronzano, Francesco; Giessmann, Robert; Juty, Nick; Ioannidis, Vassilios; Emam, Ibrahim; Rocca-Serra, Philippe
Published in: 1, 2021
Publisher: Zenodo
DOI: 10.5281/zenodo.5786674

The Increasing Role of FAIR Data Practices in Biomedical Research

Author(s): Rocca-Serra, Philippe
Published in: 1, 2020
Publisher: Zenodo
DOI: 10.5281/zenodo.4133822

Research data alliance - RDA an organisation towards social and technical bridges to enable the open sharing and re-use of data with full credit to FAIR (Findable, Accessible, Interoperable, Reusable) data requirements.

Author(s): Anne, Cambon-Thomsen; Laurence, Mabile; Mogens, Thomsen; Romain, David
Published in: https://hal.archives-ouvertes.fr/hal-02310949, 1, 2019
Publisher: Zenodo
DOI: 10.5281/zenodo.3479151