Nanoscale live-cell activity sensing using smart probes and imaging

Publikacje

Structure–Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System**

Autorzy: Elke De Zitter, Siewert Hugelier, Sam Duwé, Wim Vandenberg, Alison G. Tebo, Luc Van Meervelt, Peter Dedecker
Opublikowane w: Angewandte Chemie International Edition, Numer 60/18, 2021, Strona(/y) 10073-10081, ISSN 1433-7851
Wydawca: John Wiley & Sons Ltd.
DOI: 10.1002/anie.202015201

Design of experiments for the optimization of SOFI super-resolution microscopy imaging

Autorzy: Dario Cevoli, Raffaele Vitale, Wim Vandenberg, Siewert Hugelier, Robin Van den Eynde, Peter Dedecker, Cyril Ruckebusch
Opublikowane w: Biomedical Optics Express, Numer 12/5, 2021, Strona(/y) 2617, ISSN 2156-7085
Wydawca: The Optical Society
DOI: 10.1364/boe.421168

Fluorophore unmixing based on bleaching and recovery kinetics using MCR-ALS.

Autorzy: Siewert Hugelier; R Van den Eynde; Wim Vandenberg; Wim Vandenberg; Peter Dedecker
Opublikowane w: Talanta, Numer 2, 2021, ISSN 1873-3573
Wydawca: Elsevier
DOI: 10.1016/j.talanta.2021.122117

Absolute measurement of cellular activities using photochromic single-fluorophore biosensors and intermittent quantification

Autorzy: Franziska Bierbuesse,Anaïs C Bourges,Vincent Gielen,Viola Mönkemöller,Wim Vandenberg,Yi Shen,Johan Hofkens,Pieter Vanden Berghe,Robert E Campbell,Benjamien Moeyaert,Peter Dedecker
Opublikowane w: Nature Communications, 2022, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-022-29508-w

Spectrally Tunable Förster Resonance Energy Transfer-Based Biosensors Using Organic Dye Grafting

Autorzy: Marco Dalla Vecchia; Amandine Conte-Daban; Benjamin Cappe; Wim Vandenberg; Peter Vandenabeele; Franck B. Riquet; Peter Dedecker
Opublikowane w: ACS Sensors, Numer 3, 2022, ISSN 2379-3694
Wydawca: ACS
DOI: 10.1021/acssensors.2c00066

Self-contained and modular structured illumination microscope

Autorzy: Robin Van den Eynde, Wim Vandenberg, Siewert Hugelier, Arno Bouwens, Johan Hofkens, Marcel Müller, Peter Dedecker
Opublikowane w: Biomedical Optics Express, Numer 12/7, 2021, Strona(/y) 4414, ISSN 2156-7085
Wydawca: The Optical Society
DOI: 10.1364/boe.423492

Orthogonal fluorescent chemogenetic reporters for multicolor imaging

Autorzy: Alison G. Tebo; Benjamien Moeyaert; Marion Thauvin; Marion Thauvin; Irene Carlon-Andres; Dorothea Böken; Michel Volovitch; Michel Volovitch; Sergi Padilla-Parra; Sergi Padilla-Parra; Peter Dedecker; Sophie Vriz; Sophie Vriz; Arnaud Gautier; Arnaud Gautier
Opublikowane w: ISSN: 1552-4450, Numer 15524450, 2020, ISSN 1552-4450
Wydawca: Nature Publishing Group
DOI: 10.1101/2020.04.04.022111

Model-free pixelation correction in SOFI imaging

Autorzy: Franziska Bierbuesse; Vincent Gielen; Wim Vandenberg; Peter Dedecker
Opublikowane w: OSA Continuum, Numer 25787519, 2021, ISSN 2578-7519
Wydawca: OSA
DOI: 10.1364/osac.413107

Super-resolution imaging goes fast and deep

Autorzy: Sam Duwé, Peter Dedecker
Opublikowane w: Nature Methods, Numer 14/11, 2017, Strona(/y) 1042-1044, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/nmeth.4484

Correcting for photodestruction in super-resolution optical fluctuation imaging

Autorzy: Yves Peeters, Wim Vandenberg, Sam Duwé, Arno Bouwens, Tomáš Lukeš, Cyril Ruckebusch, Theo Lasser, Peter Dedecker
Opublikowane w: Scientific Reports, Numer 7/1, 2017, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-017-09666-4

Reduced Fluorescent Protein Switching Fatigue by Binding-Induced Emissive State Stabilization

Autorzy: Thijs Roebroek, Sam Duwé, Wim Vandenberg, Peter Dedecker
Opublikowane w: International Journal of Molecular Sciences, Numer 18/9, 2017, Strona(/y) 2015, ISSN 1422-0067
Wydawca: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/ijms18092015

Live-cell monochromatic dual-label sub-diffraction microscopy by mt-pcSOFI

Autorzy: S. Duwé, W. Vandenberg, P. Dedecker
Opublikowane w: Chemical Communications, Numer 53/53, 2017, Strona(/y) 7242-7245, ISSN 1359-7345
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c7cc02344h

Efficient switching of mCherry fluorescence using chemical caging

Autorzy: Bas M. C. Cloin, Elke De Zitter, Desiree Salas, Vincent Gielen, Gert E. Folkers, Marina Mikhaylova, Maike Bergeler, Bartosz Krajnik, Jeremy Harvey, Casper C. Hoogenraad, Luc Van Meervelt, Peter Dedecker, Lukas C. Kapitein
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 114/27, 2017, Strona(/y) 7013-7018, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1617280114

Effect of probe diffusion on the SOFI imaging accuracy

Autorzy: Wim Vandenberg, Peter Dedecker
Opublikowane w: Scientific Reports, Numer 7/1, 2017, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/srep44665

An extended quantitative model for super-resolution optical fluctuation imaging (SOFI)

Autorzy: Wim Vandenberg, Marcel Leutenegger, Sam Duwé, Peter Dedecker
Opublikowane w: Optics Express, Numer 27/18, 2019, Strona(/y) 25749, ISSN 1094-4087
Wydawca: Optical Society of America
DOI: 10.1364/oe.27.025749

Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM

Autorzy: Elke De Zitter, Daniel Thédié, Viola Mönkemöller, Siewert Hugelier, Joël Beaudouin, Virgile Adam, Martin Byrdin, Luc Van Meervelt, Peter Dedecker, Dominique Bourgeois
Opublikowane w: Nature Methods, Numer 16/8, 2019, Strona(/y) 707-710, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/s41592-019-0462-3

Spatio-temporal correlation super-resolution optical fluctuation imaging

Autorzy: A. Purohit, W. Vandenberg, T. Dertinger, D. Wöll, P. Dedecker, J. Enderlein
Opublikowane w: EPL (Europhysics Letters), Numer 125/2, 2019, Strona(/y) 20005, ISSN 1286-4854
Wydawca: IOP Publishing
DOI: 10.1209/0295-5075/125/20005

Quantitative comparison of camera technologies for cost-effective super-resolution optical fluctuation imaging (SOFI)

Autorzy: Robin Van den Eynde, Alice Sandmeyer, Wim Vandenberg, Sam Duwé, Wolfgang Hübner, Thomas Huser, Peter Dedecker, Marcel Müller
Opublikowane w: Journal of Physics: Photonics, Numer 1/4, 2019, Strona(/y) 044001, ISSN 2515-7647
Wydawca: IOP Science
DOI: 10.1088/2515-7647/ab36ae

Optimizing the fluorescent protein toolbox and its use

Autorzy: Sam Duwé, Peter Dedecker
Opublikowane w: Current Opinion in Biotechnology, Numer 58, 2019, Strona(/y) 183-191, ISSN 0958-1669
Wydawca: Elsevier BV
DOI: 10.1016/j.copbio.2019.04.006

Presenting a codon-optimized palette of fluorescent proteins for use in Candida albicans

Autorzy: Wouter Van Genechten, Liesbeth Demuyser, Peter Dedecker, Patrick Van Dijck
Opublikowane w: Scientific Reports, Numer 10/1, 2020, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-020-63308-w

SOFIevaluator: a strategy for the quantitative quality assessment of SOFI data

Autorzy: Benjamien Moeyaert, Wim Vandenberg, Peter Dedecker
Opublikowane w: Biomedical Optics Express, Numer 11/2, 2020, Strona(/y) 636, ISSN 2156-7085
Wydawca: The Optical Society
DOI: 10.1364/boe.382278

Quantitative Model for Reversibly Photoswitchable Sensors

Autorzy: Adelizzi, Beatrice; Gielen, Vincent; Le Saux, Thomas; Dedecker, Peter; Jullien, Ludovic
Opublikowane w: "ACS Sensors, American Chemical Society, 2021, ⟨10.1021/acssensors.0c02414⟩", Numer 3, 2021, ISSN 2379-3694
Wydawca: ACS

Smoothness correction for better SOFI imaging.

Autorzy: Siewert Hugelier; Wim Vandenberg; Tomas Lukes; Kristin S. Grußmayer; Kristin S. Grußmayer; Paul H. C. Eilers; Peter Dedecker; Cyril Ruckebusch
Opublikowane w: Scientific Reports, Vol 11, Iss 1, Pp 1-9 (2021), Numer 11, 2021, Strona(/y) 1, ISSN 2045-2322
Wydawca: Nature Publishing Group
DOI: 10.1038/s41598-021-87164-4

Quantitative Model for Reversibly Photoswitchable Sensors.

Autorzy: Beatrice Adelizzi; Vincent Gielen; Thomas Le Saux; Peter Dedecker; Ludovic Jullien
Opublikowane w: ACS Sensors, Numer 23793694, 2021, ISSN 2379-3694
Wydawca: American Chemical Society
DOI: 10.1021/acssensors.0c02414

Simultaneous readout of multiple FRET pairs using photochromism

Autorzy: Thijs Roebroek, Wim Vandenberg, François Sipieter, Siewert Hugelier, Christophe Stove, Jin Zhang, Peter Dedecker
Opublikowane w: Nature Communications, Numer 12/1, 2021, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-021-22043-0

Separation of spectrally overlapping fluorophores using intra-exposure excitation modulation

Autorzy: Hana Valenta; Siewert Hugelier; Sam Duwé; Giulia Lo Gerfo; Marcel Müller; Peter Dedecker; Wim Vandenberg
Opublikowane w: Biophysical Reports, Numer 26670747, 2021, ISSN 2667-0747
Wydawca: Cell Press
DOI: 10.1016/j.bpr.2021.100026

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